Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19] 2,591 sequences; 63,226,382 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq2371 87.8 9e-13 >seq2371 Length=131994 Score = 87.8 bits (96), Expect = 9e-13 Identities = 161/236 (68%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 25922 TCAACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTC 25981 ||||| || ||| || | |||||||||||| | || || || | ||| | || | Sbjct 27907 TCAACACGCTTCATGAAGAGATCTGGAATCCAGAGGGCGTAGAAAAGATCACGGGCACGA 27848 Query 25982 ATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCAT 26041 | || || |||||||| |||||| || || | ||| || |||| ||| | ||||||| Sbjct 27847 ACCTCCTCCTTTCCGTGGTTCTTTCGGAGGTCGAGGAACTCGAAAACATCGGCGTGCCAT 27788 Query 26042 GGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTT 26101 || || | ||||| || ||| ||| || || ||||||||||| || |||| Sbjct 27787 GGCTCGAGGTAGATGGCGAAAGCACCAGGTCGCTTGTTACCACCTTGATCAACATATCGA 27728 Query 26102 GCAGTTTCATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGT 26157 || || | |||||||| | ||| ||||| | ||| | || ||||||||| Sbjct 27727 GCGGTGTTGTTGAAAACCCGAAGCATAGGAACGATTCCGTTGGAGTTTCCGTTTGT 27672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253032009550325