Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19] 2,591 sequences; 63,226,382 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq1798 138 1e-27 >seq1798 Length=66087 Score = 138 bits (152), Expect = 1e-27 Identities = 199/281 (71%), Gaps = 0/281 (0%) Strand=Plus/Minus Query 139260 AGTCCATCTGCACCATGATATGCTGCATAGAATCCAGACATATTTGCGAGCAGTGCTTGT 139319 || || |||| || |||||| | |||||||| || ||| ||||| |||| ||| ||| Sbjct 18770 AGACCCTCTGGGCCGTGATATACAGCATAGAAAGCACTCATGTTTGCAAGCAATGCCTGT 18711 Query 139320 GCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGTAGT 139379 |||||||| | || ||||| || || ||||||| ||||| ||||||| |||||| ||| Sbjct 18710 GCTGTGCACACATTGCTGGTAGCCTTTTCTCTTCGGATATGTTGCTCTCGAGTTTGAAGT 18651 Query 139380 GCTAATCTGTATGCAGGATTGCCTTCGCTGTCCACTGACTGACCTACAATTCTGCCAGGT 139439 || ||||| ||| || || |||||| ||| || | | | || || Sbjct 18650 GCCAATCTCATTGCCTTATCTCCAAGTCTGTCCTTTGAAACTCCGATGAGGCGTCCTGGG 18591 Query 139440 ATCTTTCTCTTATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGGACCTCCGTATCCC 139499 || || | |||||| || || | |||||||| ||||||||||| || |||||||| Sbjct 18590 ATTTTACGCTTATATTTATCGCTAACGGCAAAGAAAGCAGCATGAGGCCCACCGTATCCA 18531 Query 139500 ATAGGAATACCAAACCTTTGCATACTACCTACAGCAATATC 139540 | ||||| |||||| | ||| | |||| | ||||| || Sbjct 18530 AAAGGAACACCAAATCGTTGGGCATTACCAAATGCAATGTC 18490 Score = 95.1 bits (104), Expect = 1e-14 Identities = 163/234 (70%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 |||||||| ||||| || || ||||| ||||| || || ||||||||||||||||| || Sbjct 19922 ACACCAATTGGACCAACACCTGGACCACCACCGCCGTGAGGAATACAGAATGTCTTGTGA 19863 Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGCA 138302 | || ||||| || ||||| || ||| |||| ||| | || | || ||| Sbjct 19862 AGGTTGAGATGGCAAACATCAGCCCCAATCTCACCAGGTGAGCACAATCCGATTTGAGCA 19803 Query 138303 TTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTTACATATC 138362 || | ||| |||||||| | || || || || |||| | ||||| | || || | | Sbjct 19802 TTCATATTAGCACCATCCATGTAAACTTGTCCTCCATGTTGGTGAACCAACTCGCA-AAC 19744 Query 138363 TGTC-TGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCATAAT 138415 | | ||| | | ||||| |||||| || ||||| || |||||||| || Sbjct 19743 AGCCTTGACTTCGGGCTCAAAGACACCAAAGGTAGATGGGTAAGTAATCATGAT 19690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578979647689320