Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19] 2,591 sequences; 63,226,382 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq2371 280 2e-70 seq1 116 4e-21 seq2036 96.9 4e-15 >seq2371 Length=131994 Score = 280 bits (310), Expect = 2e-70 Identities = 1178/1825 (65%), Gaps = 55/1825 (3%) Strand=Plus/Plus Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCTTCAACGGCTCGATGGCATCCTCAT 75204 ||||||||| |||| ||||| ||| || | ||||| | || |||||||||| || Sbjct 27312 TACTTTGGTTTCAAGACCCTCGAGC-GATCATATCTCCTCCGCCTCGATGGCAAGATCTG 27370 Query 75205 GGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGA 75264 ||| ||||| | ||| ||||||| ||||| |||| || ||||| || || ||||| Sbjct 27371 CGAACGTCCACAACATATGATCATGCGTGTCGCTGTCGGAATACACGGCGAGGATATTGA 27430 Query 75265 TTCTGTCTTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCA 75322 ||| | | || || ||| || ||||||| |||| || |||| ||||| ||||| Sbjct 27431 GGCTGCCATCGAAACTTACAACTTGATGTCCAGCAAG-TAC-TTCACCCACGCCTCACCA 27488 Query 75323 ACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAAC 75382 || || || ||||||||||||| | || | || |||||||| |||| || Sbjct 27489 ACACTTTTTGCTGCTGGTACACCACAGGCACAACTTTCTTCATGCTTCCTCATCGACATG 27548 Query 75383 AAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAG 75442 ||||||||| || | |||||||| | ||| | | | ||||| || |||||| Sbjct 27549 AAGGAGGACAGCATTGATGGTATCTACGACACTTTGAAGATTTGTGCCATGATTTCAAAG 27608 Query 75443 TGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGG 75502 || || ||||| || | | | || | | |||| | || ||| Sbjct 27609 AACGCAGGTGGTATCGGACTCAATGTTCACAGAATCCGCGCCACTGGTGCTTACATTGCC 27668 Query 75503 GGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCG 75562 || ||||| || | || | || || |||| |||||||| || || ||| ||| || Sbjct 27669 GGTACAAACGGAAACTCCAACGGAATCGTTCCTATGCTTCGGGTTTTCAACAACACCGCT 27728 Query 75563 CGCTATGTAAATCAAGCGGGGCGTCGCAAGGG-----GTCCAT-CGCGGTCTACTTGGAA 75616 || ||||| |||||| || | |||| | || | | ||| ||||| | || Sbjct 27729 CGATATGTTGATCAAGGTGG---TAACAAGCGACCTGGTGCTTTCGCCATCTACCTCGAG 27785 Query 75617 CCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAG 75676 |||||||| |||||| | | |||||||| || | ||| ||||| || | || ||| Sbjct 27786 CCATGGCACGCCGATGTTTTCGAGTTCCTCGACCTCCGAAAGAACCACGGAAAGGAGGAG 27845 Query 75677 GCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTT 75736 | ||| | ||||| || | |||| ||||||||||| || ||||||||||| ||| Sbjct 27846 GTTCGTGCCCGTGATCTTTTCTACGCCCTCTGGATTCCAGATCTCTTCATGAAGCGTGTT 27905 Query 75737 GAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCG 75796 || || | | ||| | | | || || | || || ||| | |||||| Sbjct 27906 GAAAAGAACCTTGACTGGACATTGATGTGCCCTAATGAGTGTCCTGGTTTGGCCGACGTC 27965 Query 75797 GTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTA-GAGCCAATGC 75855 ||||| || || || || | ||| || || || ||||| | | ||| || Sbjct 27966 TACGGTGACGAATTCGAGGCTTTGTACGAGAAATACGAGTCTGAGGGCAAGGGCC---GC 28022 Query 75856 GACTGTACCA--GCCGCCGATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGA 75913 | | | || ||| | ||||| | |||| ||| | | || || ||||||||| Sbjct 28023 AAGAGCATCAAGGCCCAAAAGCTTTGGTACTCTATCCTCGAGGCTCAAACCGAGACTGGA 28082 Query 75914 ACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGA 75973 | || | |||||||||||||||||||| ||| ||||| |||||||||||| | || Sbjct 28083 AACCCTTTCATGCTTTACAAGGATGCTTGCAACCGAAAGAGCAACCAAAAGAATCTTGGT 28142 Query 75974 ACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACG 76033 || ||| ||||| || | || || |||||| | || ||| | |||||| Sbjct 28143 ACCATCCGAAGCTCCAACTTGTGTACTGAAATTGTCGAATACTGTGCACCTGATGAGGTT 28202 Query 76034 GCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACT 76093 ||||||||||| |||||||| | || || |||| ||||| |||| ||||| |||| Sbjct 28203 GCTGTTTGCAACTTGGCATCGCTGGCTCTCCCAACATATGTTGATGAGAAGACTGCCACT 28262 Query 76094 TTTGATTATGAAAAACTTCATGAAATC-ACAAAGATTGTTACCAAAAATCTAAACCGAGT 76152 | ||| | | || ||||| || || | ||| |||| ||| || | ||| | Sbjct 28263 TATGACTTCCAGAAGCTTCACGAGGTCTGCCAAG-TTGTCGTCAAGAACTTGAACAAGAT 28321 Query 76153 CATTGACAGAAATTTTTATCCCGT---TGAGACTGCGCGAAAGTCTAATATGCGACACAG 76209 || || | || | || || || ||| || ||||| ||| | || ||||| Sbjct 28322 TATCGATATCAACTACTACCCTGTGCCCGAG---GCAAGAAAGAGCAATTTCCGCCACAG 28378 Query 76210 ACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATT--TTGTGCCGCTACGCA 76267 |||||||| | | ||||| |||||||| || |||| ||| || | | | || | || Sbjct 28379 ACCTATTGCTCTTGGTGTCCAAGGTCTTGCTGATG-CTTTCTTGGCTCTTCGTCTTC-CA 28436 Query 76268 TTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCA 76327 || || || || |||||| | | || | ||||| |||||||| || ||||| Sbjct 28437 TTCGAGTCCCCAGAGGCCAAGCACCTCAACATCCAAATCTTCGAAACCATTTACCACGCT 28496 Query 76328 TCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGT 76387 | || || || ||||| | || ||| | |||||||| | | || Sbjct 28497 GCTTTGACTGCTTCCATGGAGTTGGCAAAGATTCATGGTACATATGAGACTTACCAAGGC 28556 Query 76388 TCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAA--GCTCA 76445 || || || ||| | || | ||| || | ||| ||||||| || | ||| | | || Sbjct 28557 TCACCTGCCTCCAAGGGCGAGCTCCAATATGACATGTGGG-GTGTTACACCTACGGATC- 28614 Query 76446 ACTACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTT 76505 | || |||| | | ||| | | || | | ||| | || |||||| | Sbjct 28615 TTTGGGATTGGGCTAGCTTAAAGCAGCAGATTGCTCAACATGGTATCCGCAACAGTTTGC 28674 Query 76506 TGATGGCACCAATGCCAACAGCCTCCACCGCACAAA-TCTTGGGTAATAATGAATGCTTT 76564 | | || || |||||||| ||| ||| |||| |||||| | || || ||||| Sbjct 28675 TCGTCGCTCCTATGCCAACTGCCAGTACCAGTCAAATTCTTGGAT-TCAACGAGTGCTTC 28733 Query 76565 GAACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTC 76624 || |||||||| | ||||||||| || | || || || ||||| ||||| Sbjct 28734 GAGCCATACACCTCCAACATCTACTCTCGACGTGTTCTTGCTGGAGAGTTCCAAGTTGTC 28793 Query 76625 AA-CAAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAGGA 76683 || | | | || |||| || || | || || || |||||| | | ||||| | Sbjct 28794 AATCCATGGCTTC-TCAAGGATCTGGTTGATATGGGACTGTGGTCCGATAACATGAAAAA 28852 Query 76684 ---TCTCA-TGGTGAAAGCGGGTGGTTCCATTCAAAATATCTCAGATATCCCAGATGATA 76739 | ||| || ||| ||||| ||||||||||| | || | ||||||| ||||| Sbjct 28853 CCGTATCATTGCTGA----CGGTGGATCCATTCAAAACGTTCCAAACATCCCAGCTGATA 28908 Query 76740 TCAAGAATCTCTACCGCACAGTGTGGGAAA--TCAAGATGAAAGATGTCATTGACATGGC 76797 ||||| || ||| || || ||||||| ||| | | | | || || | ||||| Sbjct 28909 TCAAGGCCCTTTACAAGACTGTTTGGGAAATCTCACAACGTACCA--TCGTTCAGATGGC 28966 Query 76798 CGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTATTCATGGAAAGTCC 76857 || || |||||| |||||||||||| |||| ||||| | |||| | ||| Sbjct 28967 TGCCGACCGTGGTGCGTTCATTGATCAATCTCAATCAATGAACATCCACATGAAGGATCC 29026 Query 76858 AACGATGTCCAAGCTCTCTTCTATGCATAT-GTACGCGTGGAAACAGGGGCTCAAAACCG 76916 ||| ||| ||| | | ||||||| | | | || ||||| ||| || || || | Sbjct 29027 AACCATGGGGAAGATTACCAGTATGCATTTCGCAGGC-TGGAAGTTGGGTCTTAAGACTG 29085 Query 76917 GAATGTACTATCTCCGATCAAAGGC 76941 |||||||||||||||| ||| ||| Sbjct 29086 GAATGTACTATCTCCGTACAATGGC 29110 >seq1 Length=509191 Score = 116 bits (128), Expect = 4e-21 Identities = 227/329 (69%), Gaps = 10/329 (3%) Strand=Plus/Plus Query 175186 TTCAGTGATGTTGAGGGGATTGACGCCGCCAAAGATGAACTTGAAGAGATT-GTGGATTT 175244 |||| ||||||| ||| || |||| ||||| |||| | | | | ||| || ||| Sbjct 194381 TTCAAGGATGTTGCGGGTATGGACGAAGCCAA-GATGGAGATTATGGAATTCGTTTCTTT 194439 Query 175245 TCTCAAGCAACCCGAGAGATATTTTGGAAGT---GGTGCCAAGATCCCCCGAGGCGCCCT 175301 || ||| ||| ||| || | | ||| ||||| |||||||| ||||| ||| | Sbjct 194440 CCTAAAGACACCGGAGCAAT---TCGAAAGATTGGGTGCTAAGATCCCTCGAGGAGCCAT 194496 Query 175302 TCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATC 175361 || | || || ||||| || ||||| | || || |||| || || ||||| Sbjct 194497 CCTTTCTGGGCCACCCGGTACTGGTAAGACTTTACTAGCAAAGGCCACAGCTGGAGAATC 194556 Query 175362 AAATGTCCCATTCATCCAGTG-CTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGG 175420 | ||| || ||| || |||| | || | | ||||||||||||||||||||||| | Sbjct 194557 AGGTGTGCCTTTCTTC-AGTGTCAGTGGTTCCGAGTTTGTGGAGATGTTTGTTGGTGTTG 194615 Query 175421 GTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCT 175480 |||| || ||||| |||||||| | || ||| | | ||| || |||||| ||| Sbjct 194616 GTGCTTCCAGAGTTCGAGATCTCTTCGCTATGGCCAGAAAGAATACCCCTTGTATTATCT 194675 Query 175481 TCATTGATGAGATTGATGCGGTGGGCAAG 175509 |||||||||| || |||||| | || ||| Sbjct 194676 TCATTGATGAAATCGATGCGATTGGAAAG 194704 >seq2036 Length=314316 Score = 96.9 bits (106), Expect = 4e-15 Identities = 151/213 (71%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 65008 GTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGAC-ACAA--AGTCT 65064 || || || ||| |||||||||| | ||||| | |||| | | |||| ||||| Sbjct 236126 GTTCCTTGCATTAAGAAGAAGGCTGATTGGGCTGTCCGATGGATCCAAGACAAGGAGTCT 236067 Query 65065 CGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGG 65124 |||| || | || ||| |||| ||||| ||| ||||||||||||||| || Sbjct 236066 A---CCTTTGCTCAACGTCTTGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTCAGTGGT 236010 Query 65125 TCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCA 65184 || ||| | || | |||||||||||||| || |||||| | || || |||||| Sbjct 236009 TCTTTCGCATCCATCTTCTGGTTGAAGAAGCGTGGCCTCATGGCTGGTCTTACCTTCTCC 235950 Query 65185 AATGAACTTATTTCCCGAGATGAGGGTCTCCAC 65217 || || | || ||||| ||||||||||||||| Sbjct 235949 AACGAGTTGATCTCCCGTGATGAGGGTCTCCAC 235917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596550278602080