Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19]
2,591 sequences; 63,226,382 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq2371 158 4e-33
seq634 113 1e-19
seq2214 84.2 6e-11
>seq2371
Length=131994
Score = 158 bits (174), Expect = 4e-33
Identities = 576/900 (64%), Gaps = 9/900 (1%)
Strand=Plus/Minus
Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTT 155689
|||||| ||||| ||| |||| ||| || || |||||| || | |||||| |||||
Sbjct 28184 GTATTCGACAATTTCAGTACACAAGTTGGAGCTTCGGATGGTACCAAGATTCTTTTGGTT 28125
Query 155690 AGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGC 155749
|| | ||| |||||||||||||| || ||| | ||| |||| ||||| | || ||
Sbjct 28124 GCTCTTTCGGTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCAGTCTCGGTTTGAGC 28065
Query 155750 GTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGA 155809
|| || || ||| || | |||| || || |||| | |||| || ||
Sbjct 28064 CTCGAGGATAGAGTACCAAAGCTTTTGGGCCTTGATGCTCTTGCGGCCCTTGCCCTCAGA 28005
Query 155810 CTCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCA 155869
||| |||||| |||| | | | || |||||||| || || ||||| ||
Sbjct 28004 CTCGTATTTCTCGTACAAAGCCTCGAATTCGTCACCGTAGACGTCGGCCAAACCAGGACA 27945
Query 155870 CTTATCGGGGCAAAACAGCGACCA---AATTTTATTACCGATTACACGCTCCATAAATAC 155926
|| || ||||| | || | ||| || || || | ||||||| ||| || |
Sbjct 27944 CTCATTAGGGCACATCAATGTCCAGTCAAGGTTCTTTTC---AACACGCTTCATGAAGAG 27888
Query 155927 ATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATT 155986
||| ||| | || |||||||| || | || |||||| | ||||| ||
Sbjct 27887 ATCTGGAATCCAGAGGGCGTAGAAAAGATCACGGGCACGAACCTCCTCCTTTCCGTGGTT 27828
Query 155987 CTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAA 156046
||| || || || | ||| || || ||| | || |||||| || || || || ||
Sbjct 27827 CTTTCGGAGGTCGAGGAACTCGAAAACATCGGCGTGCCATGGCTCGAGGTAGATGGCGAA 27768
Query 156047 ACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACC 156103
| |||| | |||| ||||| ||||| ||||| ||||| || || ||||| || |
Sbjct 27767 AGCACCAGGTCGCTTGTTACCACCTTGATCAACATATCGAGCGGTGTTGTTGAAAACCCG 27708
Query 156104 TAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGA 156163
|||||||||| || || ||||| | || || || ||| ||| | | ||||| |
Sbjct 27707 AAGCATAGGAACGATTCCGTTGGAGTTTCCGTTTGTACCGGCAATGTAAGCACCAGTGGC 27648
Query 156164 GCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTC 156223
||| | | |||| || ||||| |||||||||| || ||||| || ||
Sbjct 27647 GCGGATTCTGTGAACATTGAGTCCGATACCACCTGCGTTCTTTGAAATCATGGCACAAAT 27588
Query 156224 CTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGA 156283
||| | ||| | | | ||||| ||||| || || | ||| | || |||| ||
Sbjct 27587 CTTCAAAGTGTCGTAGATACCATCAATGCTGTCCTCCTTCATGTCGATGAGGAAGCATGA 27528
Query 156284 ACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATA 156343
| | ||| | ||||||| ||||| || ||||| |||| || || | || ||
Sbjct 27527 AGAAAGTTGTGCCTGTGGTGTACCAGCAGCAAAAAGTGTTGGTGAGGCGTGGGTGAAGTA 27468
Query 156344 CTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATACA 156403
||| | ||||| | | ||| || || | ||||| || ||||| || |
Sbjct 27467 CTTGCTGGACATCAAGTTGTAAGTTTCGATGGCAGCCTCAATATCCTCGCCGTGTATTCC 27408
Query 156404 GATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAG 156463
|| || ||| | ||| |||||| || ||||| || ||| ||||| | || ||
Sbjct 27407 GACAGCGACACGCATGATCATATGTTGTGGACGTTCGCAGATCTTGCCATCGAGGCGGAG 27348
Query 156464 AAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATAATCAAACAGAAAATCACGGTTGTA 156523
|| |||| || || || || || || || || || | | ||||||||||| |||
Sbjct 27347 GAGATATGATCGCTCGAGGGTCTTGAAACCAAAGTATTGGTAGTTAAAATCACGGTCGTA 27288
>seq634
Length=94567
Score = 113 bits (124), Expect = 1e-19
Identities = 205/300 (68%), Gaps = 0/300 (0%)
Strand=Plus/Minus
Query 302583 CTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAG 302642
||||| | |||||| || |||||||||||| || || |||||||| |||||||| ||
Sbjct 30657 CTTGACAAGACGACGTTGGATATAACCAGTTTCAGCAGTCTTTACAGCAGTATCAATGAG 30598
Query 302643 ACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAA 302702
||| ||||||| |||| || |||||||| | ||| ||| || ||| | | | |
Sbjct 30597 ACCTTCACGACCGGCCATGGCGTGGAAGAAAAACTCGGTTGGTGTTAACCCTCTGAGATA 30538
Query 302703 GGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAG 302762
||| |||| |||||||| | | ||| || |||| || ||| || || || || ||
Sbjct 30537 CGAGTTCTCGACGAAACCTCTTGACTCTGGGGAATAATCATCCTTTGTGAAATGAGGAAG 30478
Query 302763 GGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCA 302822
|| | | | | ||| | || ||||||||||| || || ||||| || | |
Sbjct 30477 TGTTCGATATTTGAACCCGAAAGGAATACGCTTTCCTTCGACAGATTGCTGACCGACGAG 30418
Query 302823 CGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCATAATAAC 302882
|| ||||||| || ||||| | | ||||| || |||| || |||| |||||
Sbjct 30417 CGCGGTCATCTGAGAGATATTGATGGTAGATCCCTTTGAACCAGACTTGGCCATGATAAC 30358
Score = 89.7 bits (98), Expect = 2e-12
Identities = 104/140 (74%), Gaps = 3/140 (2%)
Strand=Plus/Minus
Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872
|||||||| | | ||| || |||||| |||| || || |||||| | ||||| |||
Sbjct 31448 AGAATTTCCTTCAGACGAGGCACACCAAGGGTGACATT---CTTGGAAGATACACCGGCA 31392
Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932
|| ||||||||||| || || | ||| |||| || || ||||| || || |||| |
Sbjct 31391 AAATGGAAAGTATTGAGCGTCATTTGTGTAGCGGGTTCTCCAATCGACTGAGCAGCAAGC 31332
Query 301933 ATACCAACCATTTCTCCTGG 301952
| |||||||||||||| ||
Sbjct 31331 ACTCCAACCATTTCTCCAGG 31312
>seq2214
Length=147621
Score = 84.2 bits (92), Expect = 6e-11
Identities = 204/307 (66%), Gaps = 4/307 (1%)
Strand=Plus/Minus
Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089
|| |||||||||| |||||||||||||| | | || || ||| | ||| |||
Sbjct 84185 CCGACAGCATCAAGTTCGTCAATGAAAACAATAGCAGGTGATTTTCCCTTGGCAGCAGCA 84126
Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149
|| | ||| | || || ||| || | ||| || || | ||| | ||||| || |
Sbjct 84125 AACAGTTCACGGACTCGCTTTGCACCTACACCGACGTAAACTTCGTCGAATTCGGATCCA 84066
Query 289150 GATACTTGAAT--GAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCT 289207
|| | |||| ||||| || ||||| ||||| || || | |||| ||| ||||
Sbjct 84065 GACA--TGAAGAAGAATGGAACGCCAGCTTCACCTGCAACGGCTCGTGCCAAAAGAGTCT 84008
Query 289208 TACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACT 289267
| || || ||||| || || | | || || |||||||| | ||| | ||| ||
Sbjct 84007 TTCCGGTACCAGGAGGGCCAACGAGGAGGACACCCTTTGGAAGTTTGCCACCAAGAGTAG 83948
Query 289268 TATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCAT 289327
| || || ||| |||| || ||||| || | || | ||||| | |||||||||||
Sbjct 83947 AGAACTTTTCCGGGTTCTTCAAGAATTCCACGAGATCTTGGAGTTCCTCTTTTGCCTCAT 83888
Query 289328 CACATCC 289334
| || ||
Sbjct 83887 CGCAACC 83881
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471768739795167
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |