Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19] 2,591 sequences; 63,226,382 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq2371 158 4e-33 seq634 113 1e-19 seq2214 84.2 6e-11 >seq2371 Length=131994 Score = 158 bits (174), Expect = 4e-33 Identities = 576/900 (64%), Gaps = 9/900 (1%) Strand=Plus/Minus Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTT 155689 |||||| ||||| ||| |||| ||| || || |||||| || | |||||| ||||| Sbjct 28184 GTATTCGACAATTTCAGTACACAAGTTGGAGCTTCGGATGGTACCAAGATTCTTTTGGTT 28125 Query 155690 AGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGC 155749 || | ||| |||||||||||||| || ||| | ||| |||| ||||| | || || Sbjct 28124 GCTCTTTCGGTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCAGTCTCGGTTTGAGC 28065 Query 155750 GTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGA 155809 || || || ||| || | |||| || || |||| | |||| || || Sbjct 28064 CTCGAGGATAGAGTACCAAAGCTTTTGGGCCTTGATGCTCTTGCGGCCCTTGCCCTCAGA 28005 Query 155810 CTCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCA 155869 ||| |||||| |||| | | | || |||||||| || || ||||| || Sbjct 28004 CTCGTATTTCTCGTACAAAGCCTCGAATTCGTCACCGTAGACGTCGGCCAAACCAGGACA 27945 Query 155870 CTTATCGGGGCAAAACAGCGACCA---AATTTTATTACCGATTACACGCTCCATAAATAC 155926 || || ||||| | || | ||| || || || | ||||||| ||| || | Sbjct 27944 CTCATTAGGGCACATCAATGTCCAGTCAAGGTTCTTTTC---AACACGCTTCATGAAGAG 27888 Query 155927 ATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATT 155986 ||| ||| | || |||||||| || | || |||||| | ||||| || Sbjct 27887 ATCTGGAATCCAGAGGGCGTAGAAAAGATCACGGGCACGAACCTCCTCCTTTCCGTGGTT 27828 Query 155987 CTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAA 156046 ||| || || || | ||| || || ||| | || |||||| || || || || || Sbjct 27827 CTTTCGGAGGTCGAGGAACTCGAAAACATCGGCGTGCCATGGCTCGAGGTAGATGGCGAA 27768 Query 156047 ACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACC 156103 | |||| | |||| ||||| ||||| ||||| ||||| || || ||||| || | Sbjct 27767 AGCACCAGGTCGCTTGTTACCACCTTGATCAACATATCGAGCGGTGTTGTTGAAAACCCG 27708 Query 156104 TAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGA 156163 |||||||||| || || ||||| | || || || ||| ||| | | ||||| | Sbjct 27707 AAGCATAGGAACGATTCCGTTGGAGTTTCCGTTTGTACCGGCAATGTAAGCACCAGTGGC 27648 Query 156164 GCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTC 156223 ||| | | |||| || ||||| |||||||||| || ||||| || || Sbjct 27647 GCGGATTCTGTGAACATTGAGTCCGATACCACCTGCGTTCTTTGAAATCATGGCACAAAT 27588 Query 156224 CTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGA 156283 ||| | ||| | | | ||||| ||||| || || | ||| | || |||| || Sbjct 27587 CTTCAAAGTGTCGTAGATACCATCAATGCTGTCCTCCTTCATGTCGATGAGGAAGCATGA 27528 Query 156284 ACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATA 156343 | | ||| | ||||||| ||||| || ||||| |||| || || | || || Sbjct 27527 AGAAAGTTGTGCCTGTGGTGTACCAGCAGCAAAAAGTGTTGGTGAGGCGTGGGTGAAGTA 27468 Query 156344 CTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATACA 156403 ||| | ||||| | | ||| || || | ||||| || ||||| || | Sbjct 27467 CTTGCTGGACATCAAGTTGTAAGTTTCGATGGCAGCCTCAATATCCTCGCCGTGTATTCC 27408 Query 156404 GATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAG 156463 || || ||| | ||| |||||| || ||||| || ||| ||||| | || || Sbjct 27407 GACAGCGACACGCATGATCATATGTTGTGGACGTTCGCAGATCTTGCCATCGAGGCGGAG 27348 Query 156464 AAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATAATCAAACAGAAAATCACGGTTGTA 156523 || |||| || || || || || || || || || | | ||||||||||| ||| Sbjct 27347 GAGATATGATCGCTCGAGGGTCTTGAAACCAAAGTATTGGTAGTTAAAATCACGGTCGTA 27288 >seq634 Length=94567 Score = 113 bits (124), Expect = 1e-19 Identities = 205/300 (68%), Gaps = 0/300 (0%) Strand=Plus/Minus Query 302583 CTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAG 302642 ||||| | |||||| || |||||||||||| || || |||||||| |||||||| || Sbjct 30657 CTTGACAAGACGACGTTGGATATAACCAGTTTCAGCAGTCTTTACAGCAGTATCAATGAG 30598 Query 302643 ACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAA 302702 ||| ||||||| |||| || |||||||| | ||| ||| || ||| | | | | Sbjct 30597 ACCTTCACGACCGGCCATGGCGTGGAAGAAAAACTCGGTTGGTGTTAACCCTCTGAGATA 30538 Query 302703 GGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAG 302762 ||| |||| |||||||| | | ||| || |||| || ||| || || || || || Sbjct 30537 CGAGTTCTCGACGAAACCTCTTGACTCTGGGGAATAATCATCCTTTGTGAAATGAGGAAG 30478 Query 302763 GGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCA 302822 || | | | | ||| | || ||||||||||| || || ||||| || | | Sbjct 30477 TGTTCGATATTTGAACCCGAAAGGAATACGCTTTCCTTCGACAGATTGCTGACCGACGAG 30418 Query 302823 CGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCATAATAAC 302882 || ||||||| || ||||| | | ||||| || |||| || |||| ||||| Sbjct 30417 CGCGGTCATCTGAGAGATATTGATGGTAGATCCCTTTGAACCAGACTTGGCCATGATAAC 30358 Score = 89.7 bits (98), Expect = 2e-12 Identities = 104/140 (74%), Gaps = 3/140 (2%) Strand=Plus/Minus Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872 |||||||| | | ||| || |||||| |||| || || |||||| | ||||| ||| Sbjct 31448 AGAATTTCCTTCAGACGAGGCACACCAAGGGTGACATT---CTTGGAAGATACACCGGCA 31392 Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932 || ||||||||||| || || | ||| |||| || || ||||| || || |||| | Sbjct 31391 AAATGGAAAGTATTGAGCGTCATTTGTGTAGCGGGTTCTCCAATCGACTGAGCAGCAAGC 31332 Query 301933 ATACCAACCATTTCTCCTGG 301952 | |||||||||||||| || Sbjct 31331 ACTCCAACCATTTCTCCAGG 31312 >seq2214 Length=147621 Score = 84.2 bits (92), Expect = 6e-11 Identities = 204/307 (66%), Gaps = 4/307 (1%) Strand=Plus/Minus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089 || |||||||||| |||||||||||||| | | || || ||| | ||| ||| Sbjct 84185 CCGACAGCATCAAGTTCGTCAATGAAAACAATAGCAGGTGATTTTCCCTTGGCAGCAGCA 84126 Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149 || | ||| | || || ||| || | ||| || || | ||| | ||||| || | Sbjct 84125 AACAGTTCACGGACTCGCTTTGCACCTACACCGACGTAAACTTCGTCGAATTCGGATCCA 84066 Query 289150 GATACTTGAAT--GAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCT 289207 || | |||| ||||| || ||||| ||||| || || | |||| ||| |||| Sbjct 84065 GACA--TGAAGAAGAATGGAACGCCAGCTTCACCTGCAACGGCTCGTGCCAAAAGAGTCT 84008 Query 289208 TACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACT 289267 | || || ||||| || || | | || || |||||||| | ||| | ||| || Sbjct 84007 TTCCGGTACCAGGAGGGCCAACGAGGAGGACACCCTTTGGAAGTTTGCCACCAAGAGTAG 83948 Query 289268 TATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCAT 289327 | || || ||| |||| || ||||| || | || | ||||| | ||||||||||| Sbjct 83947 AGAACTTTTCCGGGTTCTTCAAGAATTCCACGAGATCTTGGAGTTCCTCTTTTGCCTCAT 83888 Query 289328 CACATCC 289334 | || || Sbjct 83887 CGCAACC 83881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471768739795167