Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19]
2,591 sequences; 63,226,382 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq2036 123 3e-22
seq1444 122 1e-21
seq2371 91.5 2e-12
seq1813 89.7 6e-12
>seq2036
Length=314316
Score = 123 bits (136), Expect = 3e-22
Identities = 178/250 (71%), Gaps = 1/250 (0%)
Strand=Plus/Plus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| ||| || | || ||| |||||| ||||||||||| || |||| |||||
Sbjct 235609 GCCTTTTGGTAATCAGCGACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCGAGAGAGATG 235668
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810
|||||| | ||| ||||||| |||||| ||| || ||||| || |
Sbjct 235669 TTCTCCATGAAGTCGAATGGGTTGGCAACCTTGTAAACCTTCTCATTGCCGAGAGAAAGG 235728
Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870
|| || || |||||||||||||| ||||| || ||| ||| ||| ||||||||||
Sbjct 235729 AGAAGACGATCGGCGACAAACTCAATGTATTGCTTCATCAGGTTGGCATTCATGCCGAGA 235788
Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930
||||| || || | ||| ||| ||||||| ||| |||||||| |||||| ||||
Sbjct 235789 AGCGCGCAAGGAAGAGCCTCAGTCAAGAACTCTTGCTCAATCTCGACAGCCTCGGTGATG 235848
Query 868931 ATCTGCCTGG 868940
| |||| |||
Sbjct 235849 A-CTGCTTGG 235857
Score = 100 bits (110), Expect = 3e-15
Identities = 173/251 (69%), Gaps = 3/251 (1%)
Strand=Plus/Plus
Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692
|||||||||||||| || ||| ||||| ||||| ||| | |||||| | |||
Sbjct 236260 GAGTGGATGTTCTCCATCATGATTTGGAAACCGTAGAAGAATCGGGCCTCTGGGATTTGA 236319
Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752
|| || | |||| || || |||||||| || || |||||| ||| |||||
Sbjct 236320 ACTTCACTGCTGAAGCGCTCGAGGAGGTTCTCATTGACAATTCCGTCGGAGGCAGCGAAG 236379
Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGC---GACACCCAGTGG 869809
||||| |||||||| ||| |||| ||| ||||| ||| ||||| ||||| |
Sbjct 236380 AAAGCAAGGACGTGGGAGATGAAGTAGCGTTCGTCATCGTTGAGCTTGTTGTTCCAGTCG 236439
Query 869810 ACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869
| || | || || | ||| ||||| ||||||| || ||||||||||| |||
Sbjct 236440 TGGAGATCTTTGGAAAGATCAATCTCTTCGGCAGTCCAGAAAGAAGCCTCGGCCTTCTTG 236499
Query 869870 TACATCTCCCA 869880
||||| | |||
Sbjct 236500 TACATTTGCCA 236510
>seq1444
Length=221903
Score = 122 bits (134), Expect = 1e-21
Identities = 90/105 (86%), Gaps = 0/105 (0%)
Strand=Plus/Minus
Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249
||||||||||||||||||||||||| | || |||| |||||| | || || |||||||
Sbjct 154725 CCAACTACCTCGACATCAAGCCTCTCTTGGACGTTGGCTGCAAGACCGTTGCGAACATGA 154666
Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294
|||||||||||||||| ||||| ||||| ||||| || |||||||
Sbjct 154665 TCAAGGGCAAGTCGCCAGAGGAAATCCGAAAGACATTCAACATCA 154621
>seq2371
Length=131994
Score = 91.5 bits (100), Expect = 2e-12
Identities = 91/118 (77%), Gaps = 0/118 (0%)
Strand=Plus/Minus
Query 1628465 TCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTGA 1628524
|||| || ||||| || || || || || || ||||||||| |||||||||||| ||
Sbjct 27879 TCCAGAGGGCGTAGAAAAGATCACGGGCACGAACCTCCTCCTTTCCGTGGTTCTTTCGGA 27820
Query 1628525 GGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCC 1628582
||||||| | |||| || ||||||||||| ||||| |||||| ||| || || ||
Sbjct 27819 GGTCGAGGAACTCGAAAACATCGGCGTGCCATGGCTCGAGGTAGATGGCGAAAGCACC 27762
>seq1813
Length=62987
Score = 89.7 bits (98), Expect = 6e-12
Identities = 102/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 19047 GACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAG 19106
|| || || || || ||||| || || ||| |||||| || || || | || |||
Sbjct 50478 GATAGTATTGGAGGAACGGTAACTTGTGTGATTCGCAATGTACCAAGTGGTTTGGGAGAG 50419
Query 19107 CCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACC 19166
|| || ||||||||||| ||||| ||| || ||||| |||||| ||||| || ||
Sbjct 50418 CCATGTTTTGACAAGATGGAGGCTATGCTTGCTCACGCTATGCTGAGTATCCCAGCTACA 50359
Query 19167 AAGGGATTCGAGATTGG 19183
|||||||||||||||||
Sbjct 50358 AAGGGATTCGAGATTGG 50342
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6106926570406347
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |