Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19] 2,591 sequences; 63,226,382 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq2036 123 3e-22 seq1444 122 1e-21 seq2371 91.5 2e-12 seq1813 89.7 6e-12 >seq2036 Length=314316 Score = 123 bits (136), Expect = 3e-22 Identities = 178/250 (71%), Gaps = 1/250 (0%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| || | || ||| |||||| ||||||||||| || |||| ||||| Sbjct 235609 GCCTTTTGGTAATCAGCGACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCGAGAGAGATG 235668 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | ||| ||||||| |||||| ||| || ||||| || | Sbjct 235669 TTCTCCATGAAGTCGAATGGGTTGGCAACCTTGTAAACCTTCTCATTGCCGAGAGAAAGG 235728 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 || || || |||||||||||||| ||||| || ||| ||| ||| |||||||||| Sbjct 235729 AGAAGACGATCGGCGACAAACTCAATGTATTGCTTCATCAGGTTGGCATTCATGCCGAGA 235788 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 ||||| || || | ||| ||| ||||||| ||| |||||||| |||||| |||| Sbjct 235789 AGCGCGCAAGGAAGAGCCTCAGTCAAGAACTCTTGCTCAATCTCGACAGCCTCGGTGATG 235848 Query 868931 ATCTGCCTGG 868940 | |||| ||| Sbjct 235849 A-CTGCTTGG 235857 Score = 100 bits (110), Expect = 3e-15 Identities = 173/251 (69%), Gaps = 3/251 (1%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 |||||||||||||| || ||| ||||| ||||| ||| | |||||| | ||| Sbjct 236260 GAGTGGATGTTCTCCATCATGATTTGGAAACCGTAGAAGAATCGGGCCTCTGGGATTTGA 236319 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || | |||| || || |||||||| || || |||||| ||| ||||| Sbjct 236320 ACTTCACTGCTGAAGCGCTCGAGGAGGTTCTCATTGACAATTCCGTCGGAGGCAGCGAAG 236379 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGC---GACACCCAGTGG 869809 ||||| |||||||| ||| |||| ||| ||||| ||| ||||| ||||| | Sbjct 236380 AAAGCAAGGACGTGGGAGATGAAGTAGCGTTCGTCATCGTTGAGCTTGTTGTTCCAGTCG 236439 Query 869810 ACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869 | || | || || | ||| ||||| ||||||| || ||||||||||| ||| Sbjct 236440 TGGAGATCTTTGGAAAGATCAATCTCTTCGGCAGTCCAGAAAGAAGCCTCGGCCTTCTTG 236499 Query 869870 TACATCTCCCA 869880 ||||| | ||| Sbjct 236500 TACATTTGCCA 236510 >seq1444 Length=221903 Score = 122 bits (134), Expect = 1e-21 Identities = 90/105 (86%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249 ||||||||||||||||||||||||| | || |||| |||||| | || || ||||||| Sbjct 154725 CCAACTACCTCGACATCAAGCCTCTCTTGGACGTTGGCTGCAAGACCGTTGCGAACATGA 154666 Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294 |||||||||||||||| ||||| ||||| ||||| || ||||||| Sbjct 154665 TCAAGGGCAAGTCGCCAGAGGAAATCCGAAAGACATTCAACATCA 154621 >seq2371 Length=131994 Score = 91.5 bits (100), Expect = 2e-12 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 1628465 TCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTGA 1628524 |||| || ||||| || || || || || || ||||||||| |||||||||||| || Sbjct 27879 TCCAGAGGGCGTAGAAAAGATCACGGGCACGAACCTCCTCCTTTCCGTGGTTCTTTCGGA 27820 Query 1628525 GGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCC 1628582 ||||||| | |||| || ||||||||||| ||||| |||||| ||| || || || Sbjct 27819 GGTCGAGGAACTCGAAAACATCGGCGTGCCATGGCTCGAGGTAGATGGCGAAAGCACC 27762 >seq1813 Length=62987 Score = 89.7 bits (98), Expect = 6e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 19047 GACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAG 19106 || || || || || ||||| || || ||| |||||| || || || | || ||| Sbjct 50478 GATAGTATTGGAGGAACGGTAACTTGTGTGATTCGCAATGTACCAAGTGGTTTGGGAGAG 50419 Query 19107 CCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACC 19166 || || ||||||||||| ||||| ||| || ||||| |||||| ||||| || || Sbjct 50418 CCATGTTTTGACAAGATGGAGGCTATGCTTGCTCACGCTATGCTGAGTATCCCAGCTACA 50359 Query 19167 AAGGGATTCGAGATTGG 19183 ||||||||||||||||| Sbjct 50358 AAGGGATTCGAGATTGG 50342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106926570406347