Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19]
2,591 sequences; 63,226,382 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq2371 181 1e-40
seq1113 100 3e-16
seq778 98.7 9e-16
seq2459 87.8 2e-12
>seq2371
Length=131994
Score = 181 bits (200), Expect = 1e-40
Identities = 613/944 (65%), Gaps = 37/944 (4%)
Strand=Plus/Minus
Query 139083 CGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCACA 139142
||| || | |||||| || || || || || || | | ||||||||||||||| | |||
Sbjct 28223 CGATGCCAAGTTGCAAACAGCAACCTCATCAGGTGCACAGTATTCGACAATTTCAGTACA 28164
Query 139143 CAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATC 139202
||| || | ||| ||||| | ||| | ||| ||||| |||||||| ||||||||
Sbjct 28163 CAAGTTGGAGCTTCGGATGGTACCAAGATTCTTTTGGTTGCTCTTTCGGTTGCAAGCATC 28104
Query 139203 TTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTCTATAATGAATTTGAACAA 139262
||||||||||| | || | ||||| || ||| | ||| | || | | | |||
Sbjct 28103 CTTGTAAAGCATGAAAGGGTTTCCAGTCTCGGTTTGAGCCTCGAGGATAGAGT--ACCAA 28046
Query 139263 GTCCCTAGCTTGTAT---TTGACGCACGTAAAG---TT--CGTCGCGCTCGTACTTTTCG 139314
||||| | |||| || | | | || | || |||||| || |||
Sbjct 28045 ------AGCTTTTGGGCCTTGATGCTCTTGCGGCCCTTGCCCTCAGACTCGTATTTCTCG 27992
Query 139315 TAGAGTTCGTCGAATCGTTCACCGTAGGCGTCAGAAAGATCGCGACACTTGTCAGGACAC 139374
|| | | |||||| ||||||||| |||| | | | | |||||| | ||| |||
Sbjct 27991 TACAAAGCCTCGAATTCGTCACCGTAGACGTCGGCCAAACCAGGACACTCATTAGGGCAC 27932
Query 139375 ATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCCACAAA 139434
|| | | ||| | |||| | || ||| ||||||| ||||| |||||||| |
Sbjct 27931 ATCAATGTCCAGTCAAGGTTCTTTTCAACACGCTTCATGAAGAGATCTGGAATCCAGAGG 27872
Query 139435 GCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATGTTACGTTTC--ATGTTAA 139492
||| | | | ||| || || || ||| || ||| |||| | || |
Sbjct 27871 GCGTAGAAAAGATCACGGGCACGAACCTCCTCCTTTCCGTGGTTC--TTTCGGAGGTCGA 27814
Query 139493 GGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCGTT 139552
|||| || ||||| || ||||||||||| || || |||||||| | || || || |
Sbjct 27813 GGAACTCGAAAACATCGGCGTGCCATGGCTCGAGGTAGATGGCGAAAGCACCAGGTCGCT 27754
Query 139553 TG---CCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCA 139609
|| ||||||||||| || | ||| | | || ||||| || || | ||| || | |
Sbjct 27753 TGTTACCACCTTGATCAACATATCGAGCGGTGTTGTTGAAAACCCGAAGCATAGGAACGA 27694
Query 139610 GACCGCTCGCTGTTCCGTTGGT----GCTACGGATGGGACTGTTGCGAGCTCGGACGTCA 139665
||| | | ||||||| || || | | | | | || ||| ||||
Sbjct 27693 TTCCGTTGGAGTTTCCGTTTGTACCGGCAATGTAAGCACCAGTGGCG----CGGATTCTG 27638
Query 139666 TGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAATCGCGTAATGTC 139725
|| ||||||| ||||| || || | || || || | | ||| || ||
Sbjct 27637 TGAACATTGAGTCCGATACCACCTGCGTTCTTTGAAATCATGGCACAAATCTTCAAAGTG 27578
Query 139726 TCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGC 139785
||||| ||||| |||||||| |||| ||| || || |||||||| ||||||||
Sbjct 27577 TCGTAGATACCATCAATGCTGTCCTCCTTCATGTCGATGAGGAAGCATGAAGAAAGTTGT 27518
Query 139786 GGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAAC-ATTTGTTTCGA 139844
| || || || || ||||| || || || ||||| ||||| | ||| | ||
Sbjct 27517 GCCTGTGGTGTACCAGCAGCAAAAAGTGTTGGTGAGGCGTGGGTGAAGTACTTGCTG-GA 27459
Query 139845 CATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGGATACCGACAGAGAC 139904
|||||| | ||| ||||||||||| | |||||||| ||||| || ||||||| |||
Sbjct 27458 CATCAAGTTGTAAGTTTCGATGGCAGCCTCAATATCCTCGCCGTGTATTCCGACAGCGAC 27399
Query 139905 TCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAtttttttCAGATA--A 139962
||||| | ||||||||| |||||| | | ||| |||| ||||| |
Sbjct 27398 ACGCATGATCATATGTTGTGGACGTTCGCAGATCTTGCCATCGAGGCGGAGGAGATATGA 27339
Query 139963 CCGTTCTCTAGGGTCTTGTAGCCAAAGTACCTATAGTTGAAATC 140006
|| ||| ||||||||| | |||||||| ||||| |||||
Sbjct 27338 TCG--CTCGAGGGTCTTGAAACCAAAGTATTGGTAGTTAAAATC 27297
>seq1113
Length=83002
Score = 100 bits (110), Expect = 3e-16
Identities = 127/175 (73%), Gaps = 0/175 (0%)
Strand=Plus/Minus
Query 24719 AAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACG 24778
|| || || || ||||| || || || ||||| || ||| | | |||||| | || |
Sbjct 57179 AAGACCCTCACGGGTAAGACCATCACCCTCGAGGTCGAATCTAGCGACACTATCGACAAT 57120
Query 24779 GTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTT 24838
|| || |||||||| ||||| || ||||| || || || ||||| |||||||||||
Sbjct 57119 GTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCACCGGACCAACAGCGTTTGATCTTC 57060
Query 24839 GCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGG 24893
|| || || || || || ||| | | |||||||||||||||| |||||||
Sbjct 57059 GCTGGAAAGCAACTTGAAGATGGACGCACTCTGTCAGATTATAACATCCAAAAGG 57005
>seq778
Length=242110
Score = 98.7 bits (108), Expect = 9e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||||||| |||| || | || || || ||||| || | ||||| || | |
Sbjct 99565 ATGCAGATCTTTGTTAAGACTTTGACTGGCAAGACTATCACATTAGAAGTTGAGTCTTCG 99624
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || ||||||||| || || || || || || || ||||||
Sbjct 99625 GACACGATTGATAATGTCAAGTCAAAGATCCAGGATAAGGAGGGTATTCCACCAGATCAA 99684
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| || |||||||| || || || ||| |||||||| | | | | ||||| |||
Sbjct 99685 CAGCGATTGATCTTCGCAGGCAAGCAGTTGGAGGATGGTCGTACCCTCAGCGATTACAAC 99744
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
||||||||||| || | ||| ||||| | || | || |||||
Sbjct 99745 ATTCAAAAGGAGAGCACTTTGCACCTGGTGCTTCGTCTTCGTGGAGG 99791
Score = 91.5 bits (100), Expect = 1e-13
Identities = 128/180 (71%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 24728 ACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAA 24787
|||||||| || || || ||||| || || | | ||||| | || | || ||
Sbjct 98849 ACCGGTAAGACCATCACCCTCGAGGTGGAGTCTTCGGACACTATCGACAACGTCAAGAGC 98908
Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847
||||| || ||||| || || || || || || |||||||| | ||||||||||| ||
Sbjct 98909 AAGATTCAGGACAAGGAGGGCATTCCCCCAGACCAACAACGCCTTATCTTTGCCGGAAAG 98968
Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907
||||| |||||| | | | | || ||||| ||||| || ||||| ||||| || |||
Sbjct 98969 CAGCTCGAGGATGGCCGCACCCTTTCCGATTACAACATCCAGAAGGAGTCGACTCTCCAC 99028
>seq2459
Length=125150
Score = 87.8 bits (96), Expect = 2e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847
|||||||| ||||| || ||||| || || || ||||| |||||||||||||| || ||
Sbjct 17321 AAGATCCAGGACAAGGAGGGAATTCCACCGGACCAACAGCGTTTGATCTTTGCTGGAAAG 17262
Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907
|| || |||||| | | | | || || || ||||| || ||||| ||||| || ||
Sbjct 17261 CAACTTGAGGATGGTCGTACCCTTTCGGACTACAACATCCAGAAGGAGTCGACCCTTCAT 17202
Query 24908 TTGGTGTTGCGATTGCGCGGAGG 24930
| || || || | || |||||
Sbjct 17201 CTCGTCTTACGTCTACGTGGAGG 17179
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449883028941480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |