Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19] 2,591 sequences; 63,226,382 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq2371 181 1e-40 seq1113 100 3e-16 seq778 98.7 9e-16 seq2459 87.8 2e-12 >seq2371 Length=131994 Score = 181 bits (200), Expect = 1e-40 Identities = 613/944 (65%), Gaps = 37/944 (4%) Strand=Plus/Minus Query 139083 CGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCACA 139142 ||| || | |||||| || || || || || || | | ||||||||||||||| | ||| Sbjct 28223 CGATGCCAAGTTGCAAACAGCAACCTCATCAGGTGCACAGTATTCGACAATTTCAGTACA 28164 Query 139143 CAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATC 139202 ||| || | ||| ||||| | ||| | ||| ||||| |||||||| |||||||| Sbjct 28163 CAAGTTGGAGCTTCGGATGGTACCAAGATTCTTTTGGTTGCTCTTTCGGTTGCAAGCATC 28104 Query 139203 TTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTCTATAATGAATTTGAACAA 139262 ||||||||||| | || | ||||| || ||| | ||| | || | | | ||| Sbjct 28103 CTTGTAAAGCATGAAAGGGTTTCCAGTCTCGGTTTGAGCCTCGAGGATAGAGT--ACCAA 28046 Query 139263 GTCCCTAGCTTGTAT---TTGACGCACGTAAAG---TT--CGTCGCGCTCGTACTTTTCG 139314 ||||| | |||| || | | | || | || |||||| || ||| Sbjct 28045 ------AGCTTTTGGGCCTTGATGCTCTTGCGGCCCTTGCCCTCAGACTCGTATTTCTCG 27992 Query 139315 TAGAGTTCGTCGAATCGTTCACCGTAGGCGTCAGAAAGATCGCGACACTTGTCAGGACAC 139374 || | | |||||| ||||||||| |||| | | | | |||||| | ||| ||| Sbjct 27991 TACAAAGCCTCGAATTCGTCACCGTAGACGTCGGCCAAACCAGGACACTCATTAGGGCAC 27932 Query 139375 ATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCCACAAA 139434 || | | ||| | |||| | || ||| ||||||| ||||| |||||||| | Sbjct 27931 ATCAATGTCCAGTCAAGGTTCTTTTCAACACGCTTCATGAAGAGATCTGGAATCCAGAGG 27872 Query 139435 GCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATGTTACGTTTC--ATGTTAA 139492 ||| | | | ||| || || || ||| || ||| |||| | || | Sbjct 27871 GCGTAGAAAAGATCACGGGCACGAACCTCCTCCTTTCCGTGGTTC--TTTCGGAGGTCGA 27814 Query 139493 GGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCGTT 139552 |||| || ||||| || ||||||||||| || || |||||||| | || || || | Sbjct 27813 GGAACTCGAAAACATCGGCGTGCCATGGCTCGAGGTAGATGGCGAAAGCACCAGGTCGCT 27754 Query 139553 TG---CCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCA 139609 || ||||||||||| || | ||| | | || ||||| || || | ||| || | | Sbjct 27753 TGTTACCACCTTGATCAACATATCGAGCGGTGTTGTTGAAAACCCGAAGCATAGGAACGA 27694 Query 139610 GACCGCTCGCTGTTCCGTTGGT----GCTACGGATGGGACTGTTGCGAGCTCGGACGTCA 139665 ||| | | ||||||| || || | | | | | || ||| |||| Sbjct 27693 TTCCGTTGGAGTTTCCGTTTGTACCGGCAATGTAAGCACCAGTGGCG----CGGATTCTG 27638 Query 139666 TGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAATCGCGTAATGTC 139725 || ||||||| ||||| || || | || || || | | ||| || || Sbjct 27637 TGAACATTGAGTCCGATACCACCTGCGTTCTTTGAAATCATGGCACAAATCTTCAAAGTG 27578 Query 139726 TCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGC 139785 ||||| ||||| |||||||| |||| ||| || || |||||||| |||||||| Sbjct 27577 TCGTAGATACCATCAATGCTGTCCTCCTTCATGTCGATGAGGAAGCATGAAGAAAGTTGT 27518 Query 139786 GGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAAC-ATTTGTTTCGA 139844 | || || || || ||||| || || || ||||| ||||| | ||| | || Sbjct 27517 GCCTGTGGTGTACCAGCAGCAAAAAGTGTTGGTGAGGCGTGGGTGAAGTACTTGCTG-GA 27459 Query 139845 CATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGGATACCGACAGAGAC 139904 |||||| | ||| ||||||||||| | |||||||| ||||| || ||||||| ||| Sbjct 27458 CATCAAGTTGTAAGTTTCGATGGCAGCCTCAATATCCTCGCCGTGTATTCCGACAGCGAC 27399 Query 139905 TCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAtttttttCAGATA--A 139962 ||||| | ||||||||| |||||| | | ||| |||| ||||| | Sbjct 27398 ACGCATGATCATATGTTGTGGACGTTCGCAGATCTTGCCATCGAGGCGGAGGAGATATGA 27339 Query 139963 CCGTTCTCTAGGGTCTTGTAGCCAAAGTACCTATAGTTGAAATC 140006 || ||| ||||||||| | |||||||| ||||| ||||| Sbjct 27338 TCG--CTCGAGGGTCTTGAAACCAAAGTATTGGTAGTTAAAATC 27297 >seq1113 Length=83002 Score = 100 bits (110), Expect = 3e-16 Identities = 127/175 (73%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 24719 AAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACG 24778 || || || || ||||| || || || ||||| || ||| | | |||||| | || | Sbjct 57179 AAGACCCTCACGGGTAAGACCATCACCCTCGAGGTCGAATCTAGCGACACTATCGACAAT 57120 Query 24779 GTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTT 24838 || || |||||||| ||||| || ||||| || || || ||||| ||||||||||| Sbjct 57119 GTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCACCGGACCAACAGCGTTTGATCTTC 57060 Query 24839 GCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGG 24893 || || || || || || ||| | | |||||||||||||||| ||||||| Sbjct 57059 GCTGGAAAGCAACTTGAAGATGGACGCACTCTGTCAGATTATAACATCCAAAAGG 57005 >seq778 Length=242110 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| |||| || | || || || ||||| || | ||||| || | | Sbjct 99565 ATGCAGATCTTTGTTAAGACTTTGACTGGCAAGACTATCACATTAGAAGTTGAGTCTTCG 99624 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||||||| || || || || || || || |||||| Sbjct 99625 GACACGATTGATAATGTCAAGTCAAAGATCCAGGATAAGGAGGGTATTCCACCAGATCAA 99684 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || |||||||| || || || ||| |||||||| | | | | ||||| ||| Sbjct 99685 CAGCGATTGATCTTCGCAGGCAAGCAGTTGGAGGATGGTCGTACCCTCAGCGATTACAAC 99744 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||||||||| || | ||| ||||| | || | || ||||| Sbjct 99745 ATTCAAAAGGAGAGCACTTTGCACCTGGTGCTTCGTCTTCGTGGAGG 99791 Score = 91.5 bits (100), Expect = 1e-13 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 24728 ACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAA 24787 |||||||| || || || ||||| || || | | ||||| | || | || || Sbjct 98849 ACCGGTAAGACCATCACCCTCGAGGTGGAGTCTTCGGACACTATCGACAACGTCAAGAGC 98908 Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 ||||| || ||||| || || || || || || |||||||| | ||||||||||| || Sbjct 98909 AAGATTCAGGACAAGGAGGGCATTCCCCCAGACCAACAACGCCTTATCTTTGCCGGAAAG 98968 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 ||||| |||||| | | | | || ||||| ||||| || ||||| ||||| || ||| Sbjct 98969 CAGCTCGAGGATGGCCGCACCCTTTCCGATTACAACATCCAGAAGGAGTCGACTCTCCAC 99028 >seq2459 Length=125150 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 |||||||| ||||| || ||||| || || || ||||| |||||||||||||| || || Sbjct 17321 AAGATCCAGGACAAGGAGGGAATTCCACCGGACCAACAGCGTTTGATCTTTGCTGGAAAG 17262 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 || || |||||| | | | | || || || ||||| || ||||| ||||| || || Sbjct 17261 CAACTTGAGGATGGTCGTACCCTTTCGGACTACAACATCCAGAAGGAGTCGACCCTTCAT 17202 Query 24908 TTGGTGTTGCGATTGCGCGGAGG 24930 | || || || | || ||||| Sbjct 17201 CTCGTCTTACGTCTACGTGGAGG 17179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449883028941480