Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19]
2,591 sequences; 63,226,382 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq1444 118 2e-20
seq2036 114 2e-19
seq2371 87.8 3e-11
>seq1444
Length=221903
Score = 118 bits (130), Expect = 2e-20
Identities = 89/105 (85%), Gaps = 0/105 (0%)
Strand=Plus/Minus
Query 2035651 CCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTA 2035710
|||||||||||||||||||||| ||| | || | || ||||||||||| || ||| | |
Sbjct 154725 CCAACTACCTCGACATCAAGCCTCTCTTGGACGTTGGCTGCAAGACCGTTGCGAACATGA 154666
Query 2035711 TCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCA 2035755
|||||||||||||||| ||||| ||||| ||||| || |||||||
Sbjct 154665 TCAAGGGCAAGTCGCCAGAGGAAATCCGAAAGACATTCAACATCA 154621
>seq2036
Length=314316
Score = 114 bits (126), Expect = 2e-19
Identities = 181/258 (70%), Gaps = 1/258 (0%)
Strand=Plus/Plus
Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950
|||| || ||||| || || | || ||| |||||| ||||||||||| || |||
Sbjct 235601 TGACACCGGCCTTTTGGTAATCAGCGACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCGA 235660
Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010
| ||||| |||||| | ||| |||||||| | ||| |||||| ||||
Sbjct 235661 GAGAGATGTTCTCCATGAAGTCGAATGGGTTGGCAACCTTGTAAACCTTCTCATTGCCGA 235720
Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070
| || || || || |||||||| || |||||||| || ||| ||| ||| ||||
Sbjct 235721 GAGAAAGGAGAAGACGATCGGCGACAAACTCAATGTATTGCTTCATCAGGTTGGCATTCA 235780
Query 794071 TGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCT 794130
|||||| ||||| || || | ||| | | ||||||| ||| |||||||| ||||
Sbjct 235781 TGCCGAGAAGCGCGCAAGGAAGAGCCTCAGTCAAGAACTCTTGCTCAATCTCGACAGCCT 235840
Query 794131 CGATGATGATCTGCCTGG 794148
|| |||||| |||| |||
Sbjct 235841 CGGTGATGA-CTGCTTGG 235857
>seq2371
Length=131994
Score = 87.8 bits (96), Expect = 3e-11
Identities = 90/118 (76%), Gaps = 0/118 (0%)
Strand=Plus/Minus
Query 2071877 TCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTCA 2071936
|||| ||| |||| || ||||| || || || ||||||||| |||||||||||| |
Sbjct 27879 TCCAGAGGGCGTAGAAAAGATCACGGGCACGAACCTCCTCCTTTCCGTGGTTCTTTCGGA 27820
Query 2071937 GGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCC 2071994
||||||| | |||| | ||||||||||| ||||| |||||| ||| || || ||
Sbjct 27819 GGTCGAGGAACTCGAAAACATCGGCGTGCCATGGCTCGAGGTAGATGGCGAAAGCACC 27762
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7915970783512449
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |