Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19] 2,591 sequences; 63,226,382 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq1444 118 2e-20 seq2036 114 2e-19 seq2371 87.8 3e-11 >seq1444 Length=221903 Score = 118 bits (130), Expect = 2e-20 Identities = 89/105 (85%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 2035651 CCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTA 2035710 |||||||||||||||||||||| ||| | || | || ||||||||||| || ||| | | Sbjct 154725 CCAACTACCTCGACATCAAGCCTCTCTTGGACGTTGGCTGCAAGACCGTTGCGAACATGA 154666 Query 2035711 TCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCA 2035755 |||||||||||||||| ||||| ||||| ||||| || ||||||| Sbjct 154665 TCAAGGGCAAGTCGCCAGAGGAAATCCGAAAGACATTCAACATCA 154621 >seq2036 Length=314316 Score = 114 bits (126), Expect = 2e-19 Identities = 181/258 (70%), Gaps = 1/258 (0%) Strand=Plus/Plus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 |||| || ||||| || || | || ||| |||||| ||||||||||| || ||| Sbjct 235601 TGACACCGGCCTTTTGGTAATCAGCGACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCGA 235660 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010 | ||||| |||||| | ||| |||||||| | ||| |||||| |||| Sbjct 235661 GAGAGATGTTCTCCATGAAGTCGAATGGGTTGGCAACCTTGTAAACCTTCTCATTGCCGA 235720 Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070 | || || || || |||||||| || |||||||| || ||| ||| ||| |||| Sbjct 235721 GAGAAAGGAGAAGACGATCGGCGACAAACTCAATGTATTGCTTCATCAGGTTGGCATTCA 235780 Query 794071 TGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCT 794130 |||||| ||||| || || | ||| | | ||||||| ||| |||||||| |||| Sbjct 235781 TGCCGAGAAGCGCGCAAGGAAGAGCCTCAGTCAAGAACTCTTGCTCAATCTCGACAGCCT 235840 Query 794131 CGATGATGATCTGCCTGG 794148 || |||||| |||| ||| Sbjct 235841 CGGTGATGA-CTGCTTGG 235857 >seq2371 Length=131994 Score = 87.8 bits (96), Expect = 3e-11 Identities = 90/118 (76%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2071877 TCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTCA 2071936 |||| ||| |||| || ||||| || || || ||||||||| |||||||||||| | Sbjct 27879 TCCAGAGGGCGTAGAAAAGATCACGGGCACGAACCTCCTCCTTTCCGTGGTTCTTTCGGA 27820 Query 2071937 GGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCC 2071994 ||||||| | |||| | ||||||||||| ||||| |||||| ||| || || || Sbjct 27819 GGTCGAGGAACTCGAAAACATCGGCGTGCCATGGCTCGAGGTAGATGGCGAAAGCACC 27762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915970783512449