Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19]
2,591 sequences; 63,226,382 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq2459 102 5e-17
seq1113 100 2e-16
seq778 100 2e-16
>seq2459
Length=125150
Score = 102 bits (112), Expect = 5e-17
Identities = 139/192 (72%), Gaps = 8/192 (4%)
Strand=Plus/Plus
Query 34768 GACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTC 34827
||| || |||| ||| ||||||||| ||||| |||||||| ||| | || |||| ||
Sbjct 17196 GACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGACCATCCTC 17255
Query 34828 CAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTT 34887
||||||||||| || ||||||| || || ||||| | || | ||||||||||| |
Sbjct 17256 AAGTTGCTTTCCAGCAAAGATCAAACGCTGTTGGTCCGGTGGAATTCCCTCCTTGTCCTG 17315
Query 34888 TATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTATGG 34943
|| || ||||| || | ||||| || || ||| || |||| ||| ||||
Sbjct 17316 GATCTTGGACTTGAC--AT--TGTCGATGGTGTCCGAGGACTCAACCTCAAGGGTGATGG 17371
Query 34944 TCTTTCCCGTGA 34955
|||| |||||||
Sbjct 17372 TCTTGCCCGTGA 17383
>seq1113
Length=83002
Score = 100 bits (110), Expect = 2e-16
Identities = 135/186 (73%), Gaps = 8/186 (4%)
Strand=Plus/Plus
Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847
|||| || |||||||| || || || |||| |||| || ||||||||||| |||||||
Sbjct 57005 CCTTTTGGATGTTATAATCTGACAGAGTGCGTCCATCTTCAAGTTGCTTTCCAGCGAAGA 57064
Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907
||| || || ||||| | || | ||||||||||| | || || ||||| ||
Sbjct 57065 TCAAACGCTGTTGGTCCGGTGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGAC--AT- 57121
Query 34908 CTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963
| ||||| || | | ||||| || | ||| |||||||| ||||||||||||||
Sbjct 57122 -TGTCGATAGTGTCGCTAGATTCGACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTG 57180
Query 34964 ACAAAG 34969
|| |||
Sbjct 57181 ACGAAG 57186
>seq778
Length=242110
Score = 100 bits (110), Expect = 2e-16
Identities = 165/237 (70%), Gaps = 1/237 (0%)
Strand=Plus/Minus
Query 34742 CAATCATT-TCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTT 34800
|| ||||| |||||| | | | || |||||||| | ||||||||||| ||||||||
Sbjct 99801 CACTCATTGTCCTCCACGAAGACGAAGCACCAGGTGCAAAGTGCTCTCCTTTTGAATGTT 99742
Query 34801 ATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTG 34860
|| || ||| | || |||| |||| ||||| || |||||||||| ||| || ||
Sbjct 99741 GTAATCGCTGAGGGTACGACCATCCTCCAACTGCTTGCCTGCGAAGATCAATCGCTGTTG 99682
Query 34861 GTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATT 34920
||| | || | |||||||| || | || ||| ||||| | |||| ||
Sbjct 99681 ATCTGGTGGAATACCCTCCTTATCCTGGATCTTTGACTTGACATTATCAATCGTGTCCGA 99622
Query 34921 GGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
| ||| || || | || || ||||| || || | ||||| ||||||||||||||
Sbjct 99621 AGACTCAACTTCTAATGTGATAGTCTTGCCAGTCAAAGTCTTAACAAAGATCTGCAT 99565
Score = 95.1 bits (104), Expect = 8e-15
Identities = 135/190 (71%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||| ||||| | || ||||||||| ||||| || || || ||| |||| ||||
Sbjct 99036 AGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCGGAAAGGGTGCGGCCATCC 98977
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| || ||||||||||| ||||| || ||||| |||||| | || | |||||||||||
Sbjct 98976 TCGAGCTGCTTTCCGGCAAAGATAAGGCGTTGTTGGTCTGGGGGAATGCCCTCCTTGTCC 98917
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| || || |||||| | || | || | ||| || || | ||| ||||||
Sbjct 98916 TGAATCTTGCTCTTGACGTTGTCGATAGTGTCCGAAGACTCCACCTCGAGGGTGATGGTC 98857
Query 34946 TTTCCCGTGA 34955
|| || ||||
Sbjct 98856 TTACCGGTGA 98847
Score = 95.1 bits (104), Expect = 8e-15
Identities = 152/216 (70%), Gaps = 8/216 (4%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||||| ||||| || |||||||| || ||||||||||| ||| | || ||||
Sbjct 99548 AGGACCAAGTGAAGAGTACTCTCCTTTTGGATGTTATAGTCGCTGAGGGTTCGGCCATCC 99489
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| |||||||| |||||||| || || || || ||||| | || | |||||||| ||
Sbjct 99488 TCAAGTTGCTTGCCGGCGAAAATGAGGCGCTGTTGGTCGGGTGGGATACCCTCCTTATCC 99429
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941
| || || || || || | ||||| || | ||||| || | || ||
Sbjct 99428 TGAATCTTAGACTTCAC--AT--TGTCGATTGTGTCTGAAGATTCGACCTCCAAAGTGAT 99373
Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
||||||||| || || ||||| || ||||| |||||
Sbjct 99372 GGTCTTTCCGGTAAGAGTCTTGACGAAGATTTGCAT 99337
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325682515333829
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