Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19] 2,591 sequences; 63,226,382 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq2459 102 5e-17 seq1113 100 2e-16 seq778 100 2e-16 >seq2459 Length=125150 Score = 102 bits (112), Expect = 5e-17 Identities = 139/192 (72%), Gaps = 8/192 (4%) Strand=Plus/Plus Query 34768 GACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTC 34827 ||| || |||| ||| ||||||||| ||||| |||||||| ||| | || |||| || Sbjct 17196 GACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGACCATCCTC 17255 Query 34828 CAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTT 34887 ||||||||||| || ||||||| || || ||||| | || | ||||||||||| | Sbjct 17256 AAGTTGCTTTCCAGCAAAGATCAAACGCTGTTGGTCCGGTGGAATTCCCTCCTTGTCCTG 17315 Query 34888 TATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTATGG 34943 || || ||||| || | ||||| || || ||| || |||| ||| |||| Sbjct 17316 GATCTTGGACTTGAC--AT--TGTCGATGGTGTCCGAGGACTCAACCTCAAGGGTGATGG 17371 Query 34944 TCTTTCCCGTGA 34955 |||| ||||||| Sbjct 17372 TCTTGCCCGTGA 17383 >seq1113 Length=83002 Score = 100 bits (110), Expect = 2e-16 Identities = 135/186 (73%), Gaps = 8/186 (4%) Strand=Plus/Plus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 |||| || |||||||| || || || |||| |||| || ||||||||||| ||||||| Sbjct 57005 CCTTTTGGATGTTATAATCTGACAGAGTGCGTCCATCTTCAAGTTGCTTTCCAGCGAAGA 57064 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 ||| || || ||||| | || | ||||||||||| | || || ||||| || Sbjct 57065 TCAAACGCTGTTGGTCCGGTGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGAC--AT- 57121 Query 34908 CTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | ||||| || | | ||||| || | ||| |||||||| |||||||||||||| Sbjct 57122 -TGTCGATAGTGTCGCTAGATTCGACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTG 57180 Query 34964 ACAAAG 34969 || ||| Sbjct 57181 ACGAAG 57186 >seq778 Length=242110 Score = 100 bits (110), Expect = 2e-16 Identities = 165/237 (70%), Gaps = 1/237 (0%) Strand=Plus/Minus Query 34742 CAATCATT-TCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTT 34800 || ||||| |||||| | | | || |||||||| | ||||||||||| |||||||| Sbjct 99801 CACTCATTGTCCTCCACGAAGACGAAGCACCAGGTGCAAAGTGCTCTCCTTTTGAATGTT 99742 Query 34801 ATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTG 34860 || || ||| | || |||| |||| ||||| || |||||||||| ||| || || Sbjct 99741 GTAATCGCTGAGGGTACGACCATCCTCCAACTGCTTGCCTGCGAAGATCAATCGCTGTTG 99682 Query 34861 GTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATT 34920 ||| | || | |||||||| || | || ||| ||||| | |||| || Sbjct 99681 ATCTGGTGGAATACCCTCCTTATCCTGGATCTTTGACTTGACATTATCAATCGTGTCCGA 99622 Query 34921 GGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | ||| || || | || || ||||| || || | ||||| |||||||||||||| Sbjct 99621 AGACTCAACTTCTAATGTGATAGTCTTGCCAGTCAAAGTCTTAACAAAGATCTGCAT 99565 Score = 95.1 bits (104), Expect = 8e-15 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||| | || ||||||||| ||||| || || || ||| |||| |||| Sbjct 99036 AGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCGGAAAGGGTGCGGCCATCC 98977 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||||||||| ||||| || ||||| |||||| | || | ||||||||||| Sbjct 98976 TCGAGCTGCTTTCCGGCAAAGATAAGGCGTTGTTGGTCTGGGGGAATGCCCTCCTTGTCC 98917 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | || | ||| || || | ||| |||||| Sbjct 98916 TGAATCTTGCTCTTGACGTTGTCGATAGTGTCCGAAGACTCCACCTCGAGGGTGATGGTC 98857 Query 34946 TTTCCCGTGA 34955 || || |||| Sbjct 98856 TTACCGGTGA 98847 Score = 95.1 bits (104), Expect = 8e-15 Identities = 152/216 (70%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||||| || |||||||| || ||||||||||| ||| | || |||| Sbjct 99548 AGGACCAAGTGAAGAGTACTCTCCTTTTGGATGTTATAGTCGCTGAGGGTTCGGCCATCC 99489 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || |||||||| |||||||| || || || || ||||| | || | |||||||| || Sbjct 99488 TCAAGTTGCTTGCCGGCGAAAATGAGGCGCTGTTGGTCGGGTGGGATACCCTCCTTATCC 99429 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || || || || | ||||| || | ||||| || | || || Sbjct 99428 TGAATCTTAGACTTCAC--AT--TGTCGATTGTGTCTGAAGATTCGACCTCCAAAGTGAT 99373 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||||||| || || ||||| || ||||| ||||| Sbjct 99372 GGTCTTTCCGGTAAGAGTCTTGACGAAGATTTGCAT 99337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325682515333829