Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19]
2,591 sequences; 63,226,382 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq491 143 2e-28
seq1401 113 3e-19
seq634 98.7 7e-15
seq623 87.8 1e-11
>seq491
Length=100261
Score = 143 bits (158), Expect = 2e-28
Identities = 915/1453 (63%), Gaps = 23/1453 (2%)
Strand=Plus/Plus
Query 281441 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 281500
|| || ||||| || | ||| || ||||| |||||||| ||||| || | | ||||||
Sbjct 73849 ATTCCGTTGGCGTCAACATCGAAGGTGACCTCAATTTGTGGGACACCACGTGGTGCAGGT 73908
Query 281501 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 281560
||||| || | | ||| | |||| | || || || || ||| || || |||
Sbjct 73909 GGGATACCAGTGAGCTCGAATTTACCCAAAAGGTTGTTGTCCTTGGTGCGTTGACGCTCA 73968
Query 281561 CCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTG 281620
|||||||| | ||||||| || ||| ||| || || || | || | || || |
Sbjct 73969 CCCTCGAAGACTTGGATAAGCACACCAGGTTGGTTGTCAGAGAAGGTGGAGAAGACCTCG 74028
Query 281621 GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGCT 281680
|| || || || || || |||||||| |||| |||||||| |||||||||
Sbjct 74029 GACTTCTTGGTTGGGATGGTGGTGTTTCTTGGGATAAGCTTGGTCATTTGACCACCAGCA 74088
Query 281681 GTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATAT--TTTGAAGTTTTT 281738
|| || | |||||| || | || | |||||| | |||| || | || | | ||
Sbjct 74089 GTCTCGATACCAAGGGACAATGGCGCGACATCGAGGAGGAGGATCTCGTTGGTGGACTTG 74148
Query 281739 CATCA-GTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCA 281797
| | || | || ||||| || || || | |||||||| ||||||||||| |||
Sbjct 74149 GAAGAGGTGTCTCCGGAGAGAATGGCAGCCTGGACGGCAGCACCGTATGCAACAGCCTCA 74208
Query 281798 TCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAG---TTGT 281854
||||| || | | | ||| | | || || ||||| ||| | || || |||
Sbjct 74209 TCAGGGTTGATGGACTTGTTTGGCTCCTTTCCGTTGAAGTAATCGGTAATGAGCTTTTGG 74268
Query 281855 CTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTA 281914
|| ||| || ||||||| || ||||| || | || || || || |||| |||||
Sbjct 74269 ATT--CTT-GGGATACGAGTGGAACCTCCGACAAGGACGATCTCGTGAACCTTGGATTTG 74325
Query 281915 TCCAGTTTTGAATCCAATAAAACTTTTTCAAC-GGGTTCAAGACCAGCTCTAAACAAGTC 281973
|| | || | ||| | || || || ||| | | | || || | ||
Sbjct 74326 TCAATCTTGGCATCTGCGAGGACACGGTCGACTGGGGTGGTG-GTGGATCGGAAGAGATC 74384
Query 281974 TGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTCCTTCG 282031
|| || || |||||| | || | ||| || || | || || || || || |||
Sbjct 74385 CTGGCAGAGCTCCTCGAATCTGGCACGAGT--GATGGAGGTGTAGAAGTCGATACCCTCG 74442
Query 282032 AACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGT 282091
|| | ||| |||| ||| || | |||||| | || || || || | || ||||| ||
Sbjct 74443 AAGAGAGAGTCAATTTCGATGGAAGTTTGTGCAGAGGAGGAAAGGGTTCGCTTAGCTCGC 74502
Query 282092 TCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATTCAAA--TCTGTTTTAT 282149
|| ||||| || | || | || | || || ||| | ||| || | || |
Sbjct 74503 TCGCATGCAGTGCGGAGACGACGAAGAGCACGGGC--GTTGGTAGAAAGGTCCTTCTTGT 74560
Query 282150 ATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTC 282209
|| | ||||| || || | | ||||| | || || ||||| ||||| |
Sbjct 74561 GCTTGCGTTTGAACTCGGAGACGAAGTGGTTAACAAGTCTGTTGTCGAAATCCTCACCAC 74620
Query 282210 CCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAA 282269
|||| | ||||| |||| || | | |||| || | || || || | | ||| |
Sbjct 74621 CCAAGTGAGTATCACCTGCGGTGGACTTGACTTCAAAGATACCCTCCTCGATGGTCAAGA 74680
Query 282270 GAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTT 282329
| | ||||| ||||| ||||| | |||||| || || || || || ||
Sbjct 74681 GTGAGACATCGAAAGTTCCTCCACCAAGATCAAAGATGAGAACGTTTCGCTCACCCTCAA 74740
Query 282330 GGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAA 282389
|| || || ||||| || |||| || || || || || || || || || | | |
Sbjct 74741 CCTTCTTGTCGAGACCGTAAGCAATGGCGGCTGCGGTAGGCTCGTTGATGATACGGAGGA 74800
Query 282390 CATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAAT 282449
| || |||||||| || || ||||| || |||||||| | |||||||||| | || |
Sbjct 74801 CGTTGAGACCAGCGATCAGACCGGCATCCTTGGTGGCTTGACGTTGTGAATCGGTGAAGT 74860
Query 282450 ATGCAGGAACAGTAATAACGGCATCTGTT-ACTTCTTTTCCAATATAAGCGCTTGCTGTT 282508
| || || || || | ||||| | |||| || | |||| || || || ||
Sbjct 74861 AGGCTGGGACTGTGACGACGGCGT-TGTTGACGGTTCCACCAAGGTAGGCCTCGGCAGTC 74919
Query 282509 TGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTGGATTC- 282567
| | |||| || || ||||| || || |||| |||||| | ||||||| ||
Sbjct 74920 TCTCTCATCTTGACCAAGATCATGGAAGAGATTTCTTCTGGTGTGAATTGCTTCTTCTCG 74979
Query 282568 ATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCA 282627
|||| | | | || | ||| || |||| | | || | || || |
Sbjct 74980 CCCTTGAACTCA-ATCTCGACGACTGGCTTTCCACCACGGTCGAGGACGGTGAAAGGGAA 75038
Query 282628 ATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGC 282687
| |||||||| | || || ||||| || | || ||||| || || |||||
Sbjct 75039 GTGCTTCATATCAGCCTGCACCTCCTGGTCTGCGAACTTTCGTCCAATCAAACGCTTTGC 75098
Query 282688 ATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAG 282747
|| || | || |||| || || | || |||| | || || |||||||| |||||
Sbjct 75099 GTCGAAGACTGTGTTGGCGGGGTTCATGGCGACTTGGTTCTTTGCGGCATCTCCGATCAG 75158
Query 282748 ATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGC 282807
| | || || ||||| || | ||| | || || || || || || || || || || ||
Sbjct 75159 ACGCTCGGTATCTGTGAAGGCAACGAAGGAAGGGGTAGTTCGGTTTCCCTGGTCGTTTGC 75218
Query 282808 AATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATC 282867
||||| |||| | | ||| | | | ||||||||| | || ||||| | |||
Sbjct 75219 GATAATCTCAATTCGATCATCACGGTAAATACCTACACAGGAGTAGGTGGTTCCAAGATC 75278
Query 282868 AATACCAATAGCA 282880
||||| || |||
Sbjct 75279 GATACCTATGGCA 75291
>seq1401
Length=76520
Score = 113 bits (124), Expect = 3e-19
Identities = 107/137 (78%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 282335 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 282394
|| ||||||||||| |||| |||||||||||||| || || | | ||||| ||| |||
Sbjct 32087 TTCTCAAGACCATAGGCAAGGGCAGCAGCAGTTGGCTCGTTGACTACTCTCAGAACGTTA 32146
Query 282395 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 282454
||||| |||||| || ||||| || |||||||| | |||||||||||| || || ||
Sbjct 32147 AGACCGGCAATTTGACCAGCATCCTTGGTGGCTTGACGTTGTGAATCGTTGAAGTAAGCT 32206
Query 282455 GGAACAGTAATAACGGC 282471
|| || || | ||| ||
Sbjct 32207 GGGACTGTGACAACAGC 32223
>seq634
Length=94567
Score = 98.7 bits (108), Expect = 7e-15
Identities = 187/270 (69%), Gaps = 4/270 (1%)
Strand=Plus/Plus
Query 435006 TGTAGAAGGAAAAAGAATTCAAATCAGATTCAATGGTAGAACACTTCCAATGTTCCCTAA 435065
||| |||||||| | |||| || | ||||| | |||||||||| ||| | ||
Sbjct 30435 TGTCGAAGGAAAGCGTATTCCTTTCGGGTTCAAATATCGAACACTTCCTCATTTCACAAA 30494
Query 435066 ATTTGATGATAGTGCATTCTCCAGAGGTTTTTGTCGT-AATTCCTTTATC-GAGGGTCTT 435123
|||| || || || |||||||| |||| || || | | || |||||| |
Sbjct 30495 GGATGATTATTCCCCAGAGTCAAGAGGTTTC-GTCGAGAACTCGTATCTCAGAGGGT-TA 30552
Query 435124 GGACCTTTTGAATTTTTCTTCCAAGTAATGGCTGGTCGTGAAGGTATTATTAATACAGCT 435183
||| || ||||||||||| | ||||| |||||||||||| | ||| |||| |||
Sbjct 30553 ACACCAACCGAGTTTTTCTTCCACGCCATGGCCGGTCGTGAAGGTCTCATTGATACTGCT 30612
Query 435184 ATTAAAACTGCTGATACTGGTTATATTCAAAGAAAACTTGTCAAGATGCTTGAAGATATT 435243
| || |||||||| ||||||||||| ||| | ||||||||| || |||||| |
Sbjct 30613 GTAAAGACTGCTGAAACTGGTTATATCCAACGTCGTCTTGTCAAGGCACTCGAAGATGTC 30672
Query 435244 AAACAAGAATATGATGGTACAGTGAGAAAT 435273
| ||||||| || ||||| |||||
Sbjct 30673 ATTGCCAAATATGACGGAACAGTCCGAAAT 30702
>seq623
Length=95226
Score = 87.8 bits (96), Expect = 1e-11
Identities = 191/285 (67%), Gaps = 7/285 (2%)
Strand=Plus/Minus
Query 282192 TATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTC 282251
|||||||||||| ||||||||| | |||| || | || || | || ||||| |
Sbjct 32339 TATCAAAATCTTGACCTCCCAAATGGGTATCACCAGCAGTGGCCTTGACGGTGAAAACAC 32280
Query 282252 CATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTA 282311
|| | | | | |||| |||||| ||||| ||||| | ||| |||| | |
Sbjct 32279 CACCCTGGATGTTAAGGAGAGAAACATCGAAAGTTCCTCCACCGAGATCGTAAATCAAAA 32220
Query 282312 CATTCATTTCTTTGTCTTGGTTTTT-----ATCAAGACCATACGCAAAAGCAGCAGCAGT 282366
|||| || ||| |||| ||| | | ||||| || || | |||||| |||||
Sbjct 32219 CATTTCGCTCCTTG--TTGGACTTTCCGGCACCGAGACCGTATGCGATAGCAGCGGCAGT 32162
Query 282367 TGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGC 282426
|| || || || |||| | ||| |||||||| ||||| || ||||| || |||||
Sbjct 32161 GGGCTCGTTGATGATTCGGAGAACGTTAAGACCGGCAATGGCACCCGCATCCTTGGTGGC 32102
Query 282427 TTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 282471
||| | ||| ||||| || || || || ||||| || || ||
Sbjct 32101 TTGACGTTGGTTGTCGTTGAAGTAGGCTGGGACAGTGATGACTGC 32057
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3740503192849566
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |