Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19] 2,591 sequences; 63,226,382 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq491 143 2e-28 seq1401 113 3e-19 seq634 98.7 7e-15 seq623 87.8 1e-11 >seq491 Length=100261 Score = 143 bits (158), Expect = 2e-28 Identities = 915/1453 (63%), Gaps = 23/1453 (2%) Strand=Plus/Plus Query 281441 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 281500 || || ||||| || | ||| || ||||| |||||||| ||||| || | | |||||| Sbjct 73849 ATTCCGTTGGCGTCAACATCGAAGGTGACCTCAATTTGTGGGACACCACGTGGTGCAGGT 73908 Query 281501 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 281560 ||||| || | | ||| | |||| | || || || || ||| || || ||| Sbjct 73909 GGGATACCAGTGAGCTCGAATTTACCCAAAAGGTTGTTGTCCTTGGTGCGTTGACGCTCA 73968 Query 281561 CCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTG 281620 |||||||| | ||||||| || ||| ||| || || || | || | || || | Sbjct 73969 CCCTCGAAGACTTGGATAAGCACACCAGGTTGGTTGTCAGAGAAGGTGGAGAAGACCTCG 74028 Query 281621 GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGCT 281680 || || || || || || |||||||| |||| |||||||| ||||||||| Sbjct 74029 GACTTCTTGGTTGGGATGGTGGTGTTTCTTGGGATAAGCTTGGTCATTTGACCACCAGCA 74088 Query 281681 GTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATAT--TTTGAAGTTTTT 281738 || || | |||||| || | || | |||||| | |||| || | || | | || Sbjct 74089 GTCTCGATACCAAGGGACAATGGCGCGACATCGAGGAGGAGGATCTCGTTGGTGGACTTG 74148 Query 281739 CATCA-GTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCA 281797 | | || | || ||||| || || || | |||||||| ||||||||||| ||| Sbjct 74149 GAAGAGGTGTCTCCGGAGAGAATGGCAGCCTGGACGGCAGCACCGTATGCAACAGCCTCA 74208 Query 281798 TCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAG---TTGT 281854 ||||| || | | | ||| | | || || ||||| ||| | || || ||| Sbjct 74209 TCAGGGTTGATGGACTTGTTTGGCTCCTTTCCGTTGAAGTAATCGGTAATGAGCTTTTGG 74268 Query 281855 CTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTA 281914 || ||| || ||||||| || ||||| || | || || || || |||| ||||| Sbjct 74269 ATT--CTT-GGGATACGAGTGGAACCTCCGACAAGGACGATCTCGTGAACCTTGGATTTG 74325 Query 281915 TCCAGTTTTGAATCCAATAAAACTTTTTCAAC-GGGTTCAAGACCAGCTCTAAACAAGTC 281973 || | || | ||| | || || || ||| | | | || || | || Sbjct 74326 TCAATCTTGGCATCTGCGAGGACACGGTCGACTGGGGTGGTG-GTGGATCGGAAGAGATC 74384 Query 281974 TGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTCCTTCG 282031 || || || |||||| | || | ||| || || | || || || || || ||| Sbjct 74385 CTGGCAGAGCTCCTCGAATCTGGCACGAGT--GATGGAGGTGTAGAAGTCGATACCCTCG 74442 Query 282032 AACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGT 282091 || | ||| |||| ||| || | |||||| | || || || || | || ||||| || Sbjct 74443 AAGAGAGAGTCAATTTCGATGGAAGTTTGTGCAGAGGAGGAAAGGGTTCGCTTAGCTCGC 74502 Query 282092 TCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATTCAAA--TCTGTTTTAT 282149 || ||||| || | || | || | || || ||| | ||| || | || | Sbjct 74503 TCGCATGCAGTGCGGAGACGACGAAGAGCACGGGC--GTTGGTAGAAAGGTCCTTCTTGT 74560 Query 282150 ATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTC 282209 || | ||||| || || | | ||||| | || || ||||| ||||| | Sbjct 74561 GCTTGCGTTTGAACTCGGAGACGAAGTGGTTAACAAGTCTGTTGTCGAAATCCTCACCAC 74620 Query 282210 CCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAA 282269 |||| | ||||| |||| || | | |||| || | || || || | | ||| | Sbjct 74621 CCAAGTGAGTATCACCTGCGGTGGACTTGACTTCAAAGATACCCTCCTCGATGGTCAAGA 74680 Query 282270 GAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTT 282329 | | ||||| ||||| ||||| | |||||| || || || || || || Sbjct 74681 GTGAGACATCGAAAGTTCCTCCACCAAGATCAAAGATGAGAACGTTTCGCTCACCCTCAA 74740 Query 282330 GGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAA 282389 || || || ||||| || |||| || || || || || || || || || | | | Sbjct 74741 CCTTCTTGTCGAGACCGTAAGCAATGGCGGCTGCGGTAGGCTCGTTGATGATACGGAGGA 74800 Query 282390 CATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAAT 282449 | || |||||||| || || ||||| || |||||||| | |||||||||| | || | Sbjct 74801 CGTTGAGACCAGCGATCAGACCGGCATCCTTGGTGGCTTGACGTTGTGAATCGGTGAAGT 74860 Query 282450 ATGCAGGAACAGTAATAACGGCATCTGTT-ACTTCTTTTCCAATATAAGCGCTTGCTGTT 282508 | || || || || | ||||| | |||| || | |||| || || || || Sbjct 74861 AGGCTGGGACTGTGACGACGGCGT-TGTTGACGGTTCCACCAAGGTAGGCCTCGGCAGTC 74919 Query 282509 TGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTGGATTC- 282567 | | |||| || || ||||| || || |||| |||||| | ||||||| || Sbjct 74920 TCTCTCATCTTGACCAAGATCATGGAAGAGATTTCTTCTGGTGTGAATTGCTTCTTCTCG 74979 Query 282568 ATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCA 282627 |||| | | | || | ||| || |||| | | || | || || | Sbjct 74980 CCCTTGAACTCA-ATCTCGACGACTGGCTTTCCACCACGGTCGAGGACGGTGAAAGGGAA 75038 Query 282628 ATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGC 282687 | |||||||| | || || ||||| || | || ||||| || || ||||| Sbjct 75039 GTGCTTCATATCAGCCTGCACCTCCTGGTCTGCGAACTTTCGTCCAATCAAACGCTTTGC 75098 Query 282688 ATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAG 282747 || || | || |||| || || | || |||| | || || |||||||| ||||| Sbjct 75099 GTCGAAGACTGTGTTGGCGGGGTTCATGGCGACTTGGTTCTTTGCGGCATCTCCGATCAG 75158 Query 282748 ATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGC 282807 | | || || ||||| || | ||| | || || || || || || || || || || || Sbjct 75159 ACGCTCGGTATCTGTGAAGGCAACGAAGGAAGGGGTAGTTCGGTTTCCCTGGTCGTTTGC 75218 Query 282808 AATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATC 282867 ||||| |||| | | ||| | | | ||||||||| | || ||||| | ||| Sbjct 75219 GATAATCTCAATTCGATCATCACGGTAAATACCTACACAGGAGTAGGTGGTTCCAAGATC 75278 Query 282868 AATACCAATAGCA 282880 ||||| || ||| Sbjct 75279 GATACCTATGGCA 75291 >seq1401 Length=76520 Score = 113 bits (124), Expect = 3e-19 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 282335 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 282394 || ||||||||||| |||| |||||||||||||| || || | | ||||| ||| ||| Sbjct 32087 TTCTCAAGACCATAGGCAAGGGCAGCAGCAGTTGGCTCGTTGACTACTCTCAGAACGTTA 32146 Query 282395 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 282454 ||||| |||||| || ||||| || |||||||| | |||||||||||| || || || Sbjct 32147 AGACCGGCAATTTGACCAGCATCCTTGGTGGCTTGACGTTGTGAATCGTTGAAGTAAGCT 32206 Query 282455 GGAACAGTAATAACGGC 282471 || || || | ||| || Sbjct 32207 GGGACTGTGACAACAGC 32223 >seq634 Length=94567 Score = 98.7 bits (108), Expect = 7e-15 Identities = 187/270 (69%), Gaps = 4/270 (1%) Strand=Plus/Plus Query 435006 TGTAGAAGGAAAAAGAATTCAAATCAGATTCAATGGTAGAACACTTCCAATGTTCCCTAA 435065 ||| |||||||| | |||| || | ||||| | |||||||||| ||| | || Sbjct 30435 TGTCGAAGGAAAGCGTATTCCTTTCGGGTTCAAATATCGAACACTTCCTCATTTCACAAA 30494 Query 435066 ATTTGATGATAGTGCATTCTCCAGAGGTTTTTGTCGT-AATTCCTTTATC-GAGGGTCTT 435123 |||| || || || |||||||| |||| || || | | || |||||| | Sbjct 30495 GGATGATTATTCCCCAGAGTCAAGAGGTTTC-GTCGAGAACTCGTATCTCAGAGGGT-TA 30552 Query 435124 GGACCTTTTGAATTTTTCTTCCAAGTAATGGCTGGTCGTGAAGGTATTATTAATACAGCT 435183 ||| || ||||||||||| | ||||| |||||||||||| | ||| |||| ||| Sbjct 30553 ACACCAACCGAGTTTTTCTTCCACGCCATGGCCGGTCGTGAAGGTCTCATTGATACTGCT 30612 Query 435184 ATTAAAACTGCTGATACTGGTTATATTCAAAGAAAACTTGTCAAGATGCTTGAAGATATT 435243 | || |||||||| ||||||||||| ||| | ||||||||| || |||||| | Sbjct 30613 GTAAAGACTGCTGAAACTGGTTATATCCAACGTCGTCTTGTCAAGGCACTCGAAGATGTC 30672 Query 435244 AAACAAGAATATGATGGTACAGTGAGAAAT 435273 | ||||||| || ||||| ||||| Sbjct 30673 ATTGCCAAATATGACGGAACAGTCCGAAAT 30702 >seq623 Length=95226 Score = 87.8 bits (96), Expect = 1e-11 Identities = 191/285 (67%), Gaps = 7/285 (2%) Strand=Plus/Minus Query 282192 TATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTC 282251 |||||||||||| ||||||||| | |||| || | || || | || ||||| | Sbjct 32339 TATCAAAATCTTGACCTCCCAAATGGGTATCACCAGCAGTGGCCTTGACGGTGAAAACAC 32280 Query 282252 CATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTA 282311 || | | | | |||| |||||| ||||| ||||| | ||| |||| | | Sbjct 32279 CACCCTGGATGTTAAGGAGAGAAACATCGAAAGTTCCTCCACCGAGATCGTAAATCAAAA 32220 Query 282312 CATTCATTTCTTTGTCTTGGTTTTT-----ATCAAGACCATACGCAAAAGCAGCAGCAGT 282366 |||| || ||| |||| ||| | | ||||| || || | |||||| ||||| Sbjct 32219 CATTTCGCTCCTTG--TTGGACTTTCCGGCACCGAGACCGTATGCGATAGCAGCGGCAGT 32162 Query 282367 TGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGC 282426 || || || || |||| | ||| |||||||| ||||| || ||||| || ||||| Sbjct 32161 GGGCTCGTTGATGATTCGGAGAACGTTAAGACCGGCAATGGCACCCGCATCCTTGGTGGC 32102 Query 282427 TTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 282471 ||| | ||| ||||| || || || || ||||| || || || Sbjct 32101 TTGACGTTGGTTGTCGTTGAAGTAGGCTGGGACAGTGATGACTGC 32057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740503192849566