Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19] 2,591 sequences; 63,226,382 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq778 136 8e-27 >seq778 Length=242110 Score = 136 bits (150), Expect = 8e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || ||||| ||||||||||| ||||| ||||| ||||| ||||| || || | | |||| Sbjct 99323 CGGAGAACCAAGTGCAGAGTGGATTCCTTCTGGATATTGTAATCGGAAAGTGTGCGACCG 99264 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || ||||||||||| || | ||||| ||||| || || || ||||| Sbjct 99263 TCCTCAAGCTGCTTGCCAGCAAAGATAAGGCGCTGTTGGTCTGGTGGGATACCCTCCTTG 99204 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || |||||||| | ||| || || || || ||||| || || || || | || || Sbjct 99203 TCCTGAATCTTCGATTTGACGTTGTCGATGGTATCGGAAGACTCCACCTCGAGGGTGATG 99144 Query 82776 GTCTTGCCTGTCAACGTCTTTAC 82798 ||||| || ||||| ||||| || Sbjct 99143 GTCTTACCAGTCAAAGTCTTGAC 99121 Score = 122 bits (134), Expect = 2e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | | ||| || || | ||||| ||| || || || || || ||||| Sbjct 99791 CCTCCACGAAGACGAAGCACCAGGTGCAAAGTGCTCTCCTTTTGAATGTTGTAATCGCTG 99732 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||| || || | || || || || ||||| | || ||||||||||| || Sbjct 99731 AGGGTACGACCATCCTCCAACTGCTTGCCTGCGAAGATCAATCGCTGTTGATCTGGTGGA 99672 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || |||||||| || ||||||| || ||||| |||||||| || || || ||| Sbjct 99671 ATACCCTCCTTATCCTGGATCTTTGACTTGACATTATCAATCGTGTCCGAAGACTCAACT 99612 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || || || |||||||| ||||| ||||| ||||| |||||||| Sbjct 99611 TCTAATGTGATAGTCTTGCCAGTCAAAGTCTTAACAAAGATCTGCAT 99565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981794606098349