Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19] 2,591 sequences; 63,226,382 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq778 102 8e-17 >seq778 Length=242110 Score = 102 bits (112), Expect = 8e-17 Identities = 137/188 (73%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 ||||| || ||||| |||||||||||| | ||| ||| |||||| ||||||||||| Sbjct 99305 GTGGATTCCTTCTGGATATTGTAATCGGAAAGTGTGCGACC-GTCCTCAAGCTGCTTGCC 99247 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || || ||||| ||||| || ||||| || |||||||| ||||| || Sbjct 99246 AGCAAAGATAAGGCGCTGTTGGTCTGGTGGGATACCCTCCTTGTCCTGAATCTTCGATTT 99187 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | || |||| | |||||| |||| ||||| ||| || || |||| ||| Sbjct 99186 GACGTTGTCGATGGTATCGGAAGACTCCACCTCGAGGGTGATGGTCTTACCAGTCAAAGT 99127 Query 133643 TTTTACGA 133650 || |||| Sbjct 99126 CTTGACGA 99119 Score = 86.0 bits (94), Expect = 6e-12 Identities = 125/174 (72%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||||||| | ||| | | | |||||||||||||| || Sbjct 99021 GTCGACTCCTTCTGGATGTTGTAATCGGAAAGGGTGCGGCCA-TCCTCGAGCTGCTTTCC 98963 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || || || || ||||| || || ||||| |||||||| ||||| ||| Sbjct 98962 GGCAAAGATAAGGCGTTGTTGGTCTGGGGGAATGCCCTCCTTGTCCTGAATCTTGCTCTT 98903 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 || | || | ||||| | | |||||| |||| ||||| ||| || ||||| Sbjct 98902 GACGTTGTCGATAGTGTCCGAAGACTCCACCTCGAGGGTGATGGTCTTACCGGT 98849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483405143208840