Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19]
2,591 sequences; 63,226,382 total letters
Query= NC_024697.1
Length=370920
Score E
Sequences producing significant alignments: (Bits) Value
seq2371 104 6e-17
seq2036 84.2 5e-11
>seq2371
Length=131994
Score = 104 bits (114), Expect = 6e-17
Identities = 505/792 (64%), Gaps = 31/792 (4%)
Strand=Plus/Plus
Query 110304 TATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATT 110363
|| ||||||||||| || || || || | ||| | || || || ||||| |||||
Sbjct 27312 TACTTTGGTTTCAAGACCCTCGAGCGATCATATCTCCTCCGCCTCGATGGCAAGATCTGC 27371
Query 110364 GAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAA 110423
|||||||| ||||| ||| | | ||||| || | || || || || | |||||| |
Sbjct 27372 GAACGTCCACAACATATGATCATGCGTGTCGCTGTCGGAATACACGGCGAGGATATTGAG 27431
Query 110424 GCTGTTATTGAATGTTA-----TGATGT--ATTAAGTAAAAAGAAAGCT--ATTCATGCT 110474
|||| || ||| ||| |||||| | ||||| || | || ||
Sbjct 27432 GCTGCCATCGAAACTTACAACTTGATGTCCAGCAAGTA---------CTTCACCCACGCC 27482
Query 110475 ACTCCTACCCTATTTAACGCAGGAACTAATGGAGG-ACAATTGGCTTCTTGCTTTCTTCT 110533
| || || || ||| || || || | ||| |||| | |||| ||||| || |
Sbjct 27483 TCACCAACACTTTTTGCTGCTGGTAC-ACCACAGGCACAACTTTCTTCATGCTTCCTCAT 27541
Query 110534 AGGAATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAAC-TGCTCTTA 110592
| || || || || ||||| ||||| || || || || |||| ||| | |
Sbjct 27542 CGACATGAAGGAGGACAGCATTGATGGTATCTACGACACT-TTGAAGATTTGTGCCATGA 27600
Query 110593 TTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAA 110652
|||| || ||| | || || || || | | ||||| || ||| | | || ||
Sbjct 27601 TTTCAAAGAACGCAGGTGGTATCGGACTCAATGTTCACAGAATCCGCGCCACTGGTGCTT 27660
Query 110653 ATATCGCAACAGCGAAGGGTG-CTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAAC 110711
| || || | || || || |||| ||| | ||||| ||| | | || ||||||
Sbjct 27661 ACATTGCCGGTACAAACGGAAACTCCAAC-GGAATCGTTCCTATGCTTCGGGTTTTCAAC 27719
Query 110712 GACACTGCAAAATATGTGAATCAAGGTGGT---AAGAGAAATGGCTCATTTGCTATCTAT 110768
|||| || |||||| ||||||||||| ||| || ||| | || || |||||
Sbjct 27720 AACACCGCTCGATATGTTGATCAAGGTGGTAACAAGCGACCTGGTGCTTTCGCCATCTAC 27779
Query 110769 CTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTT 110828
||||| || ||||| | ||| | || || ||| | || || || || || || |||
Sbjct 27780 CTCGAGCCATGGCACGCCGATGTTTTCGAGTTCCTCGACCTCCGAAAGAACCACGGAAAG 27839
Query 110829 GAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAA 110888
|| || | || |||||| | || || || | |||||| ||||| | ||||||||
Sbjct 27840 GAGGAGGTTCGTGCCCGTGATCTTTTCTACGCCCTCTGGATTCCAGATCTCTTCATGAAG 27899
Query 110889 CGTGTTCAAGAAAATGGCATG--TGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTAT 110946
|||||| || | || | || ||| | | ||||| ||| || | ||||||| |
Sbjct 27900 CGTGTTGAAAAGAA--CCTTGACTGGACATTGATGTGCCCTAATGAGTGTCCTGGTTTGG 27957
Query 110947 CTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGT 111006
| || || || || | || || || | | ||||| ||||| || || ||||||
Sbjct 27958 CCGACGTCTACGGTGACGAATTCGAGGCTTTGTACGAGAAATACGAGTCTGAGGGCAAGG 28017
Query 111007 TTCGCAAACAAATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAA 111066
||||| || || ||| | ||||||| | ||||| || | ||| || |
Sbjct 28018 GCCGCAAGAGCATCAAGGCCCAAAAGCTTTGGTACTCTATCCTCGAGGCTCAAACCGAGA 28077
Query 111067 CTGGAACTCCTT 111078
|||||| ||||
Sbjct 28078 CTGGAAACCCTT 28089
>seq2036
Length=314316
Score = 84.2 bits (92), Expect = 5e-11
Identities = 138/199 (69%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 131787 TTCCTGCAATTAAAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTA 131846
||||| ||||| ||||| || || |||||| | |||||| ||||| | |||
Sbjct 236125 TTCCTTGCATTAAGAAGAAGGCTGATTGGGCTGTCCGATGGATCCAAGACAAGGAGTCTA 236066
Query 131847 ATTTTTCTACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTT 131906
||| || | | ||||| || |||||| |||||| ||||| ||||| ||| |||
Sbjct 236065 CCTTTGCTCAACGTCTTGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTCAGTGGTTCTT 236006
Query 131907 TCTGTGCTATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATC 131966
|| | ||||| ||| | ||||||||||| | ||| |||| || | || |||||
Sbjct 236005 TCGCATCCATCTTCTGGTTGAAGAAGCGTGGCCTCATGGCTGGTCTTACCTTCTCCAACG 235946
Query 131967 AATTCATCTCGAGAGATGA 131985
| || ||||| | |||||
Sbjct 235945 AGTTGATCTCCCGTGATGA 235927
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1186773401152951
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |