Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19] 2,591 sequences; 63,226,382 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq2371 104 6e-17 seq2036 84.2 5e-11 >seq2371 Length=131994 Score = 104 bits (114), Expect = 6e-17 Identities = 505/792 (64%), Gaps = 31/792 (4%) Strand=Plus/Plus Query 110304 TATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATT 110363 || ||||||||||| || || || || | ||| | || || || ||||| ||||| Sbjct 27312 TACTTTGGTTTCAAGACCCTCGAGCGATCATATCTCCTCCGCCTCGATGGCAAGATCTGC 27371 Query 110364 GAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAA 110423 |||||||| ||||| ||| | | ||||| || | || || || || | |||||| | Sbjct 27372 GAACGTCCACAACATATGATCATGCGTGTCGCTGTCGGAATACACGGCGAGGATATTGAG 27431 Query 110424 GCTGTTATTGAATGTTA-----TGATGT--ATTAAGTAAAAAGAAAGCT--ATTCATGCT 110474 |||| || ||| ||| |||||| | ||||| || | || || Sbjct 27432 GCTGCCATCGAAACTTACAACTTGATGTCCAGCAAGTA---------CTTCACCCACGCC 27482 Query 110475 ACTCCTACCCTATTTAACGCAGGAACTAATGGAGG-ACAATTGGCTTCTTGCTTTCTTCT 110533 | || || || ||| || || || | ||| |||| | |||| ||||| || | Sbjct 27483 TCACCAACACTTTTTGCTGCTGGTAC-ACCACAGGCACAACTTTCTTCATGCTTCCTCAT 27541 Query 110534 AGGAATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAAC-TGCTCTTA 110592 | || || || || ||||| ||||| || || || || |||| ||| | | Sbjct 27542 CGACATGAAGGAGGACAGCATTGATGGTATCTACGACACT-TTGAAGATTTGTGCCATGA 27600 Query 110593 TTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAA 110652 |||| || ||| | || || || || | | ||||| || ||| | | || || Sbjct 27601 TTTCAAAGAACGCAGGTGGTATCGGACTCAATGTTCACAGAATCCGCGCCACTGGTGCTT 27660 Query 110653 ATATCGCAACAGCGAAGGGTG-CTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAAC 110711 | || || | || || || |||| ||| | ||||| ||| | | || |||||| Sbjct 27661 ACATTGCCGGTACAAACGGAAACTCCAAC-GGAATCGTTCCTATGCTTCGGGTTTTCAAC 27719 Query 110712 GACACTGCAAAATATGTGAATCAAGGTGGT---AAGAGAAATGGCTCATTTGCTATCTAT 110768 |||| || |||||| ||||||||||| ||| || ||| | || || ||||| Sbjct 27720 AACACCGCTCGATATGTTGATCAAGGTGGTAACAAGCGACCTGGTGCTTTCGCCATCTAC 27779 Query 110769 CTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTT 110828 ||||| || ||||| | ||| | || || ||| | || || || || || || ||| Sbjct 27780 CTCGAGCCATGGCACGCCGATGTTTTCGAGTTCCTCGACCTCCGAAAGAACCACGGAAAG 27839 Query 110829 GAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAA 110888 || || | || |||||| | || || || | |||||| ||||| | |||||||| Sbjct 27840 GAGGAGGTTCGTGCCCGTGATCTTTTCTACGCCCTCTGGATTCCAGATCTCTTCATGAAG 27899 Query 110889 CGTGTTCAAGAAAATGGCATG--TGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTAT 110946 |||||| || | || | || ||| | | ||||| ||| || | ||||||| | Sbjct 27900 CGTGTTGAAAAGAA--CCTTGACTGGACATTGATGTGCCCTAATGAGTGTCCTGGTTTGG 27957 Query 110947 CTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGT 111006 | || || || || | || || || | | ||||| ||||| || || |||||| Sbjct 27958 CCGACGTCTACGGTGACGAATTCGAGGCTTTGTACGAGAAATACGAGTCTGAGGGCAAGG 28017 Query 111007 TTCGCAAACAAATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAA 111066 ||||| || || ||| | ||||||| | ||||| || | ||| || | Sbjct 28018 GCCGCAAGAGCATCAAGGCCCAAAAGCTTTGGTACTCTATCCTCGAGGCTCAAACCGAGA 28077 Query 111067 CTGGAACTCCTT 111078 |||||| |||| Sbjct 28078 CTGGAAACCCTT 28089 >seq2036 Length=314316 Score = 84.2 bits (92), Expect = 5e-11 Identities = 138/199 (69%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 131787 TTCCTGCAATTAAAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTA 131846 ||||| ||||| ||||| || || |||||| | |||||| ||||| | ||| Sbjct 236125 TTCCTTGCATTAAGAAGAAGGCTGATTGGGCTGTCCGATGGATCCAAGACAAGGAGTCTA 236066 Query 131847 ATTTTTCTACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTT 131906 ||| || | | ||||| || |||||| |||||| ||||| ||||| ||| ||| Sbjct 236065 CCTTTGCTCAACGTCTTGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTCAGTGGTTCTT 236006 Query 131907 TCTGTGCTATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATC 131966 || | ||||| ||| | ||||||||||| | ||| |||| || | || ||||| Sbjct 236005 TCGCATCCATCTTCTGGTTGAAGAAGCGTGGCCTCATGGCTGGTCTTACCTTCTCCAACG 235946 Query 131967 AATTCATCTCGAGAGATGA 131985 | || ||||| | ||||| Sbjct 235945 AGTTGATCTCCCGTGATGA 235927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186773401152951