Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19]
2,591 sequences; 63,226,382 total letters
Query= NC_025257.1
Length=102759
Score E
Sequences producing significant alignments: (Bits) Value
seq778 98.7 7e-16
>seq778
Length=242110
Score = 98.7 bits (108), Expect = 7e-16
Identities = 154/218 (71%), Gaps = 2/218 (1%)
Strand=Plus/Minus
Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593
||| | ||||| || | ||||||||| ||||| |||||||||||| ||| || || |
Sbjct 99780 ACGAAGCACCAGGTGCAAAGTGCTCTCCTTTTGAATGTTGTAATCGCTGAGGGTACGACC 99721
Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653
|| ||||| || || || || || ||||| ||||| |||||| | || | ||| || ||
Sbjct 99720 ATCCTCCAACTGCTTGCCTGCGAAGATCAATCGCTGTTGATCTGGTGGAATACCCTCCTT 99661
Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGA 33712
|| || || || | |||| || | ||||| || || || || | ||||
Sbjct 99660 ATCCTGGATCTT-TGACTTGACATTATCAATCGTGTCCGAAGACTCAACTTCTAATGTGA 99602
Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
| || || || || || || || |||||||||||||||
Sbjct 99601 TAGTCTTGCCAGTCAAAGTCTTAACAAAGATCTGCATA 99564
Score = 84.2 bits (92), Expect = 1e-11
Identities = 139/198 (70%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600
||||| || |||||| || || || || ||||||||||| |||||||| |||| ||
Sbjct 99317 ACCAAGTGCAGAGTGGATTCCTTCTGGATATTGTAATCGGAAAGTGTGCGACCGTCCTCA 99258
Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660
| || || || ||||| || | ||||| || ||| | || | ||| || ||||| |
Sbjct 99257 AGCTGCTTGCCAGCAAAGATAAGGCGCTGTTGGTCTGGTGGGATACCCTCCTTGTCCTGA 99198
Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719
|| ||| | || || | ||| | ||| ||| || ||||| || | ||||| || ||
Sbjct 99197 ATCTTC-GATTTGACGTTGTCGATGGTATCGGAAGACTCCACCTCGAGGGTGATGGTCTT 99139
Query 33720 ACCTGTTAACGTTTTTAC 33737
||| || || || || ||
Sbjct 99138 ACCAGTCAAAGTCTTGAC 99121
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 328693620246720
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |