Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19] 2,591 sequences; 63,226,382 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq778 104 6e-17 seq2481 84.2 5e-11 >seq778 Length=242110 Score = 104 bits (114), Expect = 6e-17 Identities = 135/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 206192 TCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGC 206251 |||| || || || ||||| | || ||||| ||| ||||| |||| || ||| Sbjct 98847 TCACCGGTAAGACCATCACCCTCGAGGTGGAGTCTTCGGACACTATCGACAACGTCAAGA 98906 Query 206252 AAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAA 206311 |||||||| || || || || ||| || ||| ||| | |||||||| ||||||| Sbjct 98907 GCAAGATTCAGGACAAGGAGGGCATTCCCCCAGACCAACAACGCCTTATCTTTGCCGGAA 98966 Query 206312 AGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTC 206371 ||||| | || ||||| | || | ||||||||||| ||||||| ||||| ||||| | Sbjct 98967 AGCAGCTCGAGGATGGCCGCACCCTTTCCGATTACAACATCCAGAAGGAGTCGACTCTCC 99026 Query 206372 ACCTTGT 206378 |||| || Sbjct 99027 ACCTCGT 99033 >seq2481 Length=279592 Score = 84.2 bits (92), Expect = 5e-11 Identities = 166/244 (68%), Gaps = 4/244 (2%) Strand=Plus/Plus Query 101537 TCAGCCACCTTCCGGAGGTAATTGTGCCTCTTCTCCTTTCTTAATCTCTCGAAACGAAGG 101596 ||||| ||||| |||| |||||||| | ||| |||| | | | ||||||||||| Sbjct 39600 TCAGCAACCTTTCGGACATAATTGTGTCGCTTTTCCTCACGAAGACGTGCGAAACGAAGG 39659 Query 101597 GCAGATTGTCCTCCCCTCCCGTGTTTCTTTGGCAAAGAGACGTCAAAATTATGAAGAATT 101656 ||||||||||| || | ||||| ||||| || | | ||| || || || | || Sbjct 39660 GCAGATTGTCCACCACGACCGTGCTTCTTGGGGAGATCGACTGAGAATTTGTGGACAACA 39719 Query 101657 TTCTTGGTGTTCCCAGAGAGAGTCGCGAAAAGAGCAGAAGAACCGTCAAGAATAATAAAT 101716 | |||||| ||| ||| || ||||||| || ||| || | |||||||||| Sbjct 39720 TCGCGGGTGTTTCCACTGAGGGTTCCGAAAAGCGCTCCGTTACCATCCATAATAATAAAT 39779 Query 101717 CCGAATACATCGGA--AGATGTCAGAAGTTCAGAGAGACACTCGATATGGAATGAACTGT 101774 || ||| || || ||| || || |||| |||| ||| |||||||| ||| Sbjct 39780 CCAAAT--TTCTGATCAGACTCCAAGAGCTCAGCGAGAGCCTCTGTATGGAATTTGTTGT 39837 Query 101775 CGCA 101778 |||| Sbjct 39838 CGCA 39841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181781566873311