Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19] 2,591 sequences; 63,226,382 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq2036 118 2e-20 >seq2036 Length=314316 Score = 118 bits (130), Expect = 2e-20 Identities = 203/291 (70%), Gaps = 13/291 (4%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| || ||||||||||| || || ||||| ||||| ||| | || | Sbjct 236514 GATCTGGCAAATGTAC-AAGAAGGCCGAGGCTTCTTTCTGGACTGCCGAAGAGATTGATC 236456 Query 1455835 TCGGCGCCGA----CACGGTCCACTGGGTGTC---GCTGAGCGACGACGAGCGCCATTTC 1455887 | | || |||| ||||| ||| | ||| ||||| ||| | ||| Sbjct 236455 TTTCCAAAGATCTCCACG----ACTGGAACAACAAGCTCAACGATGACGAACGCTACTTC 236400 Query 1455888 ATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGC 1455947 ||| |||||||| || ||| ||||| ||| ||| || || || |||||||| Sbjct 236399 ATCTCCCACGTCCTTGC-TTTCTTCGCTGCCTCCGACGGAATTGTCAATGAGAACCTCCT 236341 Query 1455948 CGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGAT 1456007 || ||||| | | || || ||| | |||||||| || || || ||||| ||||| || Sbjct 236340 CGAGCGCTTCAGCAGTGAAGTTCAAATCCCAGAGGCCCGATTCTTCTACGGTTTCCAAAT 236281 Query 1456008 CGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTA 1456058 | || || |||||||||||||| || ||||| ||||| || || || || Sbjct 236280 CATGATGGAGAACATCCACTCTGAGACATACTCCCTCCTCATTGATACTTA 236230 Score = 114 bits (126), Expect = 2e-19 Identities = 186/261 (71%), Gaps = 5/261 (2%) Strand=Plus/Minus Query 1456515 CCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGC 1456574 |||||||| ||||| |||||| |||||||| ||| ||||||| | | ||| | || | Sbjct 235857 CCAAGCAG-TCATCACCGAGGCTGTCGAGATTGAGCAAGAGTTCTTGACTGAGGCTCTTC 235799 Query 1456575 CGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGC 1456634 | ||||| |||||||||| |||| | || ||| || |||||||| ||| ||||| Sbjct 235798 CTTGCGCGCTTCTCGGCATGAATGCCAAC-CTGATGAAGCAATACATTGAGTTT-GTCGC 235741 Query 1456635 CGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCC 1456694 ||| || || ||| | |||||| | ||||| ||| | |||||||| ||| Sbjct 235740 CGATCGTCTTCTCCTTTCTCTCGGCAATG-AGAAGGTTTACAAGGTTGCCAACCCATTCG 235682 Query 1456695 CATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGTGGC-G 1456753 | |||||| ||||| |||| || ||||||||||| |||||| || || || | Sbjct 235681 ACTTCATGGAGAACATCTCTCTCGCCGGAAAGACCAACTTCTTCGAGAAGCGTGTCGCTG 235622 Query 1456754 AGTACGCCAAGGCCGGCGTCA 1456774 | ||| |||||||| |||| Sbjct 235621 ATTACCAAAAGGCCGGTGTCA 235601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177561293287742