Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19]
2,591 sequences; 63,226,382 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq2036 118 2e-20
>seq2036
Length=314316
Score = 118 bits (130), Expect = 2e-20
Identities = 203/291 (70%), Gaps = 13/291 (4%)
Strand=Plus/Minus
Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834
||| ||| |||||||| || ||||||||||| || || ||||| ||||| ||| | || |
Sbjct 236514 GATCTGGCAAATGTAC-AAGAAGGCCGAGGCTTCTTTCTGGACTGCCGAAGAGATTGATC 236456
Query 1455835 TCGGCGCCGA----CACGGTCCACTGGGTGTC---GCTGAGCGACGACGAGCGCCATTTC 1455887
| | || |||| ||||| ||| | ||| ||||| ||| | |||
Sbjct 236455 TTTCCAAAGATCTCCACG----ACTGGAACAACAAGCTCAACGATGACGAACGCTACTTC 236400
Query 1455888 ATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGC 1455947
||| |||||||| || ||| ||||| ||| ||| || || || ||||||||
Sbjct 236399 ATCTCCCACGTCCTTGC-TTTCTTCGCTGCCTCCGACGGAATTGTCAATGAGAACCTCCT 236341
Query 1455948 CGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGAT 1456007
|| ||||| | | || || ||| | |||||||| || || || ||||| ||||| ||
Sbjct 236340 CGAGCGCTTCAGCAGTGAAGTTCAAATCCCAGAGGCCCGATTCTTCTACGGTTTCCAAAT 236281
Query 1456008 CGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTA 1456058
| || || |||||||||||||| || ||||| ||||| || || || ||
Sbjct 236280 CATGATGGAGAACATCCACTCTGAGACATACTCCCTCCTCATTGATACTTA 236230
Score = 114 bits (126), Expect = 2e-19
Identities = 186/261 (71%), Gaps = 5/261 (2%)
Strand=Plus/Minus
Query 1456515 CCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGC 1456574
|||||||| ||||| |||||| |||||||| ||| ||||||| | | ||| | || |
Sbjct 235857 CCAAGCAG-TCATCACCGAGGCTGTCGAGATTGAGCAAGAGTTCTTGACTGAGGCTCTTC 235799
Query 1456575 CGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGC 1456634
| ||||| |||||||||| |||| | || ||| || |||||||| ||| |||||
Sbjct 235798 CTTGCGCGCTTCTCGGCATGAATGCCAAC-CTGATGAAGCAATACATTGAGTTT-GTCGC 235741
Query 1456635 CGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCC 1456694
||| || || ||| | |||||| | ||||| ||| | |||||||| |||
Sbjct 235740 CGATCGTCTTCTCCTTTCTCTCGGCAATG-AGAAGGTTTACAAGGTTGCCAACCCATTCG 235682
Query 1456695 CATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGTGGC-G 1456753
| |||||| ||||| |||| || ||||||||||| |||||| || || || |
Sbjct 235681 ACTTCATGGAGAACATCTCTCTCGCCGGAAAGACCAACTTCTTCGAGAAGCGTGTCGCTG 235622
Query 1456754 AGTACGCCAAGGCCGGCGTCA 1456774
| ||| |||||||| ||||
Sbjct 235621 ATTACCAAAAGGCCGGTGTCA 235601
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177561293287742
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |