Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19]
2,591 sequences; 63,226,382 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq2371 289 4e-73
>seq2371
Length=131994
Score = 289 bits (320), Expect = 4e-73
Identities = 1154/1788 (65%), Gaps = 45/1788 (3%)
Strand=Plus/Minus
Query 68367 ATCCAATGTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGTACATACCGGT 68426
||| | ||| ||||| ||||||| || || | ||||||| ||||||||||| || ||
Sbjct 29141 ATCAACTGTGAACTGGATGGGTGCCGAGGCAGCCATTGTACGGAGATAGTACATTCCAGT 29082
Query 68427 TTTCAGACCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATC 68486
|| ||||| | |||| || |||||||||||| || | || |||||||
Sbjct 29081 CTTAAGACCCAACTTCCAGCCTGCGAAATGCATACTGGTAATCTTCCCCATGGTTGGATC 29022
Query 68487 GGCTATATGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCAT 68546
|| || || ||||| |||||| |||||| ||||| || || | || || |||||
Sbjct 29021 CTTCATGTGGATGTTCATTGATTGAGATTGATCAATGAACGCACCACGGTCGGCAGCCAT 28962
Query 68547 TTTTATAATACTCTTTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATC 68606
| | || | ||| | |||||||||| |||||| ||| ||||||||| |
Sbjct 28961 CTGAACGATGGTACGTTGTGAGATTTCCCAAACAGTCTTGTAAAGGGCCTTGATATCAGC 28902
Query 68607 TGGAAGGCTCGTA---TTTTGAATGGATCCACCATCGGATATAATTATATTCTTGATCTC 68663
||| | | | | | ||||||||||||||||| || | || || || || || |
Sbjct 28901 TGGGATGTTTGGAACGTTTTGAATGGATCCACCGTCAGCAATGATACGGTTTTTCATGTT 28842
Query 68664 ATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAA 68723
||| ||||| | | || | | | | || || ||||| || | ||| ||
Sbjct 28841 ATCGGACCACAGTCCCATATCAACCAGATCCTTGAGAAGCCATGGATTGACAACTTGGAA 28782
Query 68724 TTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATT 68783
|| |||| | || | |||| ||| || || ||| ||||| || | | || ||
Sbjct 28781 CTCTCCAGCAAGAACACGTCGAGAGTAGATGTTGGAGGTGTATGGCTCGAAGCACTCGTT 28722
Query 68784 ATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCT 68843
||| ||||||||| || |||||||||||||| || || | ||||| || |
Sbjct 28721 GAATCCAAGAATTTGACTGGTACTGGCAGTTGGCATAGGAGCGACGAGCAAACTGTTGCG 28662
Query 68844 AAGACCATGTGTTATGATTTTAT-CTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTA 68902
| ||||||| || | | |||| || | ||||||||||||||| | |||
Sbjct 28661 GATACCATGTTGAGCAATCTGCTGCTTTAAGCTAGC-CCAATCCCAAAGATCCGTAGGTG 28603
Query 68903 CAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCATTATATGTTT 68962
|||| ||| | || ||||| || || || ||| ||| || | || || |
Sbjct 28602 TAACACCCCACATGTCATATTGGAGCTCGCCCTTGGAGGCAGGTGAGCCTTGGTAAGTCT 28543
Query 68963 CATAAGGTCCTTCC-TGTTCAGCTAGTTCAC--AACTTGCCTCTAATGCACCGTAATAAA 69019
|||| | || | | || | | | || || | | || ||| ||| ||||
Sbjct 28542 CATATGTACCATGAATCTTTGCCAACTCCATGGAAGCAGTC---AAAGCAGCGTGGTAAA 28486
Query 69020 TTGTTTCGAAAATCTTCTTATTGAGAT-CTTGTGCTTCTAGACTATCGAATGGATAATGT 69078
| |||||||| || | | ||||| | |||| || ||| | ||||||||| | |
Sbjct 28485 TGGTTTCGAAGATTTGGATGTTGAGGTGCTTG-GCCTCTGGGGACTCGAATGGAAGACG- 28428
Query 69079 AAAAG--AATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCT 69136
|| || || ||| ||||| || | || || || |||| | | |||||||| || |
Sbjct 28427 AAGAGCCAAGAAA-GCATCAGCAAGACCTTGGACACCAAGAGCAATAGGTCTGTGGCGGA 28369
Query 69137 TATTTGAACTTTCA-GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGA 69195
||| | ||||| || || || | ||| || || || ||||| ||||| || || |
Sbjct 28368 AATT-GCTCTTTCTTGCCTCGGGCACAGGGTAGTAGTTGATATCGATAATCTTGTTCAAG 28310
Query 69196 TTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCA-AATCGTCCATCTA- 69253
|| ||| || |||| || || | || || | || ||| || | | |||
Sbjct 28309 TTCTTGACGACAACTTGGCAGACCTCGTGAAGCTTCTGGAAGTCATAAGTGGCAGTCTTC 28250
Query 69254 TAACAAACATATTC----AGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAA 69309
| | ||||||| || || | ||||| | || ||||| || ||||||| ||
Sbjct 28249 TCATCAACATATGTTGGGAGAGCCAGCGATGCCAAGTTGCAAACAGCAACCTCATCAGG- 28191
Query 69310 TTTGCA---TATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTT 69366
|||| |||| | || || ||||| | || | | ||| || || |||||
Sbjct 28190 --TGCACAGTATTCGACAATTTCAGTACACAAGTTGGAGCTTCGGATGGTACCAAGATTC 28133
Query 69367 TGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCA 69426
| || || |||||| ||| || || ||||||||||| || || || | ||||| ||
Sbjct 28132 TTTTGGTTGCTCTTTCGGTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCAGTCTCG 28073
Query 69427 ATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAACGC 69486
| |||| |||| ||||| | ||||| || || || | ||||| | |
Sbjct 28072 GTTTGAGCCTCGAGGATAGAGTACCAAAGCTTTTGGGCCTTGAT---GCTCTTGCGGCCC 28016
Query 69487 TT---CTCTTTTTCATATTGT--GTATATAGCCGTTCGAATTCATCTCCCCAAACATCAT 69541
|| ||| || |||| ||| | |||| |||||||| || || | || ||
Sbjct 28015 TTGCCCTCAGACTCGTATTTCTCGTACAAAGCC--TCGAATTCGTCACCGTAGACGTCGG 27958
Query 69542 CCAATCCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTT 69601
|||| |||||||| ||||| || |||||||||| ||| || | | | ||| || |
Sbjct 27957 CCAAACCAGGACACTCATTAGGGCACATCAATGTCCAGTCAAGGTTCTTTTCAACACGCT 27898
Query 69602 TCATAAATAGATCGGGAATCCAAAGAGC-TATAAAGAGATCTCTGGTTCTATTTTCTTCA 69660
|||| || ||||| |||||||| || || || ||| ||||| | || | | || ||
Sbjct 27897 TCATGAAGAGATCTGGAATCCAGAGGGCGTAGAAA-AGATCACGGGCACGAACCTCCTCC 27839
Query 69661 TTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGA 69720
||||| || ||| || ||||| ||||| | || ||| | |||||||| || ||
Sbjct 27838 TTTCCGTGGTTCTTTCGGAGGTCGAGGAACTCGAAAACATCGGCGTGCCATGGCTCGAGG 27779
Query 69721 TATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTA 69780
|| || || | | || ||||| || || || || ||||| | |||| || |||||
Sbjct 27778 TAGATGGCGAAAGCACCAGGTCGCTTGTTACCACCTTGATCAACATATCGAGCGGTGTTG 27719
Query 69781 TTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAA 69840
|| | || | ||||| |||| || || || || || || ||||| || | ||| |||
Sbjct 27718 TTGAAAACCCGAAGCATAGGAACGATTCCGTTGGAGTTTCCGTTTGTACCGGCAATGTAA 27659
Query 69841 CTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATT 69900
|| | ||||| || | || | || || || || ||||| | || || ||
Sbjct 27658 GCACCAGTGGCGCGGATTCTGTGAACATTGAGTCCGATACCACCTGCGTTCTTTGAAATC 27599
Query 69901 AGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGA 69960
| |||||| ||||| ||||| || ||||| || ||||| || || |||||| |
Sbjct 27598 ATGGCACAAATCTTCAAAGTGTCGTAGATACCATCAATGCTGTCCTCCTTCATGTCGATG 27539
Query 69961 AGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCG 70020
|| || || ||| | ||| ||| || || ||| ||| | ||| || || |||
Sbjct 27538 AGGAAGCATGAAGAAAGTTGTGCCTGTGGTGTACCAGCAGCAAAAAGTGTTGGTGAGGCG 27479
Query 70021 TGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCC-CA 70079
|| ||||| | || || | || ||||| ||||| || || | || |||||| |
Sbjct 27478 TGGGTGAAGTACTTGCTGGACATCAAGTTGTAAGTTTCGATGGCAGCCTCAATATCCTCG 27419
Query 70080 CTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTC 70127
| | || ||||| | ||||||||||| | |||||| || || |||||
Sbjct 27418 CCG-TGTATTCCGACAGCGACACGCATGATCATATGTTGTGGACGTTC 27372
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686886552741240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |