Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19] 2,591 sequences; 63,226,382 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq2371 289 4e-73 >seq2371 Length=131994 Score = 289 bits (320), Expect = 4e-73 Identities = 1154/1788 (65%), Gaps = 45/1788 (3%) Strand=Plus/Minus Query 68367 ATCCAATGTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGTACATACCGGT 68426 ||| | ||| ||||| ||||||| || || | ||||||| ||||||||||| || || Sbjct 29141 ATCAACTGTGAACTGGATGGGTGCCGAGGCAGCCATTGTACGGAGATAGTACATTCCAGT 29082 Query 68427 TTTCAGACCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATC 68486 || ||||| | |||| || |||||||||||| || | || ||||||| Sbjct 29081 CTTAAGACCCAACTTCCAGCCTGCGAAATGCATACTGGTAATCTTCCCCATGGTTGGATC 29022 Query 68487 GGCTATATGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCAT 68546 || || || ||||| |||||| |||||| ||||| || || | || || ||||| Sbjct 29021 CTTCATGTGGATGTTCATTGATTGAGATTGATCAATGAACGCACCACGGTCGGCAGCCAT 28962 Query 68547 TTTTATAATACTCTTTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATC 68606 | | || | ||| | |||||||||| |||||| ||| ||||||||| | Sbjct 28961 CTGAACGATGGTACGTTGTGAGATTTCCCAAACAGTCTTGTAAAGGGCCTTGATATCAGC 28902 Query 68607 TGGAAGGCTCGTA---TTTTGAATGGATCCACCATCGGATATAATTATATTCTTGATCTC 68663 ||| | | | | | ||||||||||||||||| || | || || || || || | Sbjct 28901 TGGGATGTTTGGAACGTTTTGAATGGATCCACCGTCAGCAATGATACGGTTTTTCATGTT 28842 Query 68664 ATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAA 68723 ||| ||||| | | || | | | | || || ||||| || | ||| || Sbjct 28841 ATCGGACCACAGTCCCATATCAACCAGATCCTTGAGAAGCCATGGATTGACAACTTGGAA 28782 Query 68724 TTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATT 68783 || |||| | || | |||| ||| || || ||| ||||| || | | || || Sbjct 28781 CTCTCCAGCAAGAACACGTCGAGAGTAGATGTTGGAGGTGTATGGCTCGAAGCACTCGTT 28722 Query 68784 ATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCT 68843 ||| ||||||||| || |||||||||||||| || || | ||||| || | Sbjct 28721 GAATCCAAGAATTTGACTGGTACTGGCAGTTGGCATAGGAGCGACGAGCAAACTGTTGCG 28662 Query 68844 AAGACCATGTGTTATGATTTTAT-CTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTA 68902 | ||||||| || | | |||| || | ||||||||||||||| | ||| Sbjct 28661 GATACCATGTTGAGCAATCTGCTGCTTTAAGCTAGC-CCAATCCCAAAGATCCGTAGGTG 28603 Query 68903 CAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCATTATATGTTT 68962 |||| ||| | || ||||| || || || ||| ||| || | || || | Sbjct 28602 TAACACCCCACATGTCATATTGGAGCTCGCCCTTGGAGGCAGGTGAGCCTTGGTAAGTCT 28543 Query 68963 CATAAGGTCCTTCC-TGTTCAGCTAGTTCAC--AACTTGCCTCTAATGCACCGTAATAAA 69019 |||| | || | | || | | | || || | | || ||| ||| |||| Sbjct 28542 CATATGTACCATGAATCTTTGCCAACTCCATGGAAGCAGTC---AAAGCAGCGTGGTAAA 28486 Query 69020 TTGTTTCGAAAATCTTCTTATTGAGAT-CTTGTGCTTCTAGACTATCGAATGGATAATGT 69078 | |||||||| || | | ||||| | |||| || ||| | ||||||||| | | Sbjct 28485 TGGTTTCGAAGATTTGGATGTTGAGGTGCTTG-GCCTCTGGGGACTCGAATGGAAGACG- 28428 Query 69079 AAAAG--AATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCT 69136 || || || ||| ||||| || | || || || |||| | | |||||||| || | Sbjct 28427 AAGAGCCAAGAAA-GCATCAGCAAGACCTTGGACACCAAGAGCAATAGGTCTGTGGCGGA 28369 Query 69137 TATTTGAACTTTCA-GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGA 69195 ||| | ||||| || || || | ||| || || || ||||| ||||| || || | Sbjct 28368 AATT-GCTCTTTCTTGCCTCGGGCACAGGGTAGTAGTTGATATCGATAATCTTGTTCAAG 28310 Query 69196 TTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCA-AATCGTCCATCTA- 69253 || ||| || |||| || || | || || | || ||| || | | ||| Sbjct 28309 TTCTTGACGACAACTTGGCAGACCTCGTGAAGCTTCTGGAAGTCATAAGTGGCAGTCTTC 28250 Query 69254 TAACAAACATATTC----AGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAA 69309 | | ||||||| || || | ||||| | || ||||| || ||||||| || Sbjct 28249 TCATCAACATATGTTGGGAGAGCCAGCGATGCCAAGTTGCAAACAGCAACCTCATCAGG- 28191 Query 69310 TTTGCA---TATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTT 69366 |||| |||| | || || ||||| | || | | ||| || || ||||| Sbjct 28190 --TGCACAGTATTCGACAATTTCAGTACACAAGTTGGAGCTTCGGATGGTACCAAGATTC 28133 Query 69367 TGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCA 69426 | || || |||||| ||| || || ||||||||||| || || || | ||||| || Sbjct 28132 TTTTGGTTGCTCTTTCGGTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCAGTCTCG 28073 Query 69427 ATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAACGC 69486 | |||| |||| ||||| | ||||| || || || | ||||| | | Sbjct 28072 GTTTGAGCCTCGAGGATAGAGTACCAAAGCTTTTGGGCCTTGAT---GCTCTTGCGGCCC 28016 Query 69487 TT---CTCTTTTTCATATTGT--GTATATAGCCGTTCGAATTCATCTCCCCAAACATCAT 69541 || ||| || |||| ||| | |||| |||||||| || || | || || Sbjct 28015 TTGCCCTCAGACTCGTATTTCTCGTACAAAGCC--TCGAATTCGTCACCGTAGACGTCGG 27958 Query 69542 CCAATCCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTT 69601 |||| |||||||| ||||| || |||||||||| ||| || | | | ||| || | Sbjct 27957 CCAAACCAGGACACTCATTAGGGCACATCAATGTCCAGTCAAGGTTCTTTTCAACACGCT 27898 Query 69602 TCATAAATAGATCGGGAATCCAAAGAGC-TATAAAGAGATCTCTGGTTCTATTTTCTTCA 69660 |||| || ||||| |||||||| || || || ||| ||||| | || | | || || Sbjct 27897 TCATGAAGAGATCTGGAATCCAGAGGGCGTAGAAA-AGATCACGGGCACGAACCTCCTCC 27839 Query 69661 TTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGA 69720 ||||| || ||| || ||||| ||||| | || ||| | |||||||| || || Sbjct 27838 TTTCCGTGGTTCTTTCGGAGGTCGAGGAACTCGAAAACATCGGCGTGCCATGGCTCGAGG 27779 Query 69721 TATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTA 69780 || || || | | || ||||| || || || || ||||| | |||| || ||||| Sbjct 27778 TAGATGGCGAAAGCACCAGGTCGCTTGTTACCACCTTGATCAACATATCGAGCGGTGTTG 27719 Query 69781 TTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAA 69840 || | || | ||||| |||| || || || || || || ||||| || | ||| ||| Sbjct 27718 TTGAAAACCCGAAGCATAGGAACGATTCCGTTGGAGTTTCCGTTTGTACCGGCAATGTAA 27659 Query 69841 CTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATT 69900 || | ||||| || | || | || || || || ||||| | || || || Sbjct 27658 GCACCAGTGGCGCGGATTCTGTGAACATTGAGTCCGATACCACCTGCGTTCTTTGAAATC 27599 Query 69901 AGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGA 69960 | |||||| ||||| ||||| || ||||| || ||||| || || |||||| | Sbjct 27598 ATGGCACAAATCTTCAAAGTGTCGTAGATACCATCAATGCTGTCCTCCTTCATGTCGATG 27539 Query 69961 AGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCG 70020 || || || ||| | ||| ||| || || ||| ||| | ||| || || ||| Sbjct 27538 AGGAAGCATGAAGAAAGTTGTGCCTGTGGTGTACCAGCAGCAAAAAGTGTTGGTGAGGCG 27479 Query 70021 TGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCC-CA 70079 || ||||| | || || | || ||||| ||||| || || | || |||||| | Sbjct 27478 TGGGTGAAGTACTTGCTGGACATCAAGTTGTAAGTTTCGATGGCAGCCTCAATATCCTCG 27419 Query 70080 CTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTC 70127 | | || ||||| | ||||||||||| | |||||| || || ||||| Sbjct 27418 CCG-TGTATTCCGACAGCGACACGCATGATCATATGTTGTGGACGTTC 27372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686886552741240