Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19] 2,591 sequences; 63,226,382 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq590 114 1e-20 >seq590 Length=96438 Score = 114 bits (126), Expect = 1e-20 Identities = 381/593 (64%), Gaps = 15/593 (3%) Strand=Plus/Plus Query 19234 GACATGCAAATTGGAGGATTGAGTAAAGAGTTTTCTGAAATCTTTCGTAGAGCATTTGTG 19293 || ||| ||||||||| ||| || ||||| || || || || ||||| || | | Sbjct 3072 GATATGGGAATTGGAGGCTTGGATACCGAGTTCAGTGCTATTTTCCGAAGAGCGTTCGCG 3131 Query 19294 TCGCGTGTTTTTTCTGCAGATGTCATTAAACAATTGGGATGTAAACATGTTCGTGGACTT 19353 || ||| ||||| || | | | ||| | ||||||| |||| || || || Sbjct 3132 TCTCGTATTTTTCCTCCTGGATTAATTGAGAAATTGGGCATCCAACACGTGAAGGGTATT 3191 Query 19354 TTGCTTTATGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAATTA 19413 || |||| ||| || || ||| || ||||| || ||||| | || || | || | Sbjct 3192 TTACTTTTTGGACCTCCAGGTACCGGTAAAACCTTGATTGCTCGCCAAATTGGAAAGATG 3251 Query 19414 CTTA---CAAAACAACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTA 19470 | | | | | |||| || || | || ||||| ||| |||| ||||||||||| Sbjct 3252 TTGAACTCGAGAGAACCA---AAGGTTATCAACGGTCCAGAAGTCTTGAATAAATATGTT 3308 Query 19471 GGTCAATCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGT 19530 ||||| || ||||| || | ||| | ||||| || || || |||| | || Sbjct 3309 GGTCAGTCCGAAGAGAACATCCGAAAACTCTTTGCAGATGCAGAGAAAGAGTATAAGGAG 3368 Query 19531 TTAGGGCGCAAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAG 19590 ||| | ||| | | || || || || | ||||| ||||| || |||| || Sbjct 3369 AAAGGAGATGAGAGTGGTCTTCATATCATCATTTTTGATGAGTTGGATGCCGTCTGCAAA 3428 Query 19591 CAAAGAGGTTCTGG---------TGTAAATGGAGTACATGACACTGTTGTCAATCAACTC 19641 || |||||| ||| || || ||| || ||||| ||| ||||||||||| Sbjct 3429 CAGAGAGGTAGTGGGGCCGGTGGTGGAACTGGTGTTGGTGACAGTGTCGTCAATCAACTT 3488 Query 19642 CTGTCAAAATTAGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAAT 19701 || || || | || |||||| | || || || ||||| || | ||||| ||||| ||| Sbjct 3489 CTCTCCAAGCTTGATGGTGTTGATCAGCTCAACAATATCCTACTCATTGGTATGACCAAT 3548 Query 19702 AGACTGGAATTAATAGACAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAA 19761 | |||| | || || |||||| | || || || || |||||| | | || || Sbjct 3549 CGTATGGATATGATTGATGACGCCTTGCTGCGTCCTGGACGTTTGGAAGTTCACATGGAG 3608 Query 19762 ATTAACTTACCCGATGAATGTGGACGTGTGGAAATTTTAAACATACATACATC 19814 ||| | || || || ||| || | ||||||| || || ||||| || Sbjct 3609 ATTTCGCTTCCAGACGAGGCTGGCCGAGCCCAAATTTTGAAGATTCATACTTC 3661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397443449208955