Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19]
2,591 sequences; 63,226,382 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq590 114 1e-20
>seq590
Length=96438
Score = 114 bits (126), Expect = 1e-20
Identities = 381/593 (64%), Gaps = 15/593 (3%)
Strand=Plus/Plus
Query 19234 GACATGCAAATTGGAGGATTGAGTAAAGAGTTTTCTGAAATCTTTCGTAGAGCATTTGTG 19293
|| ||| ||||||||| ||| || ||||| || || || || ||||| || | |
Sbjct 3072 GATATGGGAATTGGAGGCTTGGATACCGAGTTCAGTGCTATTTTCCGAAGAGCGTTCGCG 3131
Query 19294 TCGCGTGTTTTTTCTGCAGATGTCATTAAACAATTGGGATGTAAACATGTTCGTGGACTT 19353
|| ||| ||||| || | | | ||| | ||||||| |||| || || ||
Sbjct 3132 TCTCGTATTTTTCCTCCTGGATTAATTGAGAAATTGGGCATCCAACACGTGAAGGGTATT 3191
Query 19354 TTGCTTTATGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAATTA 19413
|| |||| ||| || || ||| || ||||| || ||||| | || || | || |
Sbjct 3192 TTACTTTTTGGACCTCCAGGTACCGGTAAAACCTTGATTGCTCGCCAAATTGGAAAGATG 3251
Query 19414 CTTA---CAAAACAACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTA 19470
| | | | | |||| || || | || ||||| ||| |||| |||||||||||
Sbjct 3252 TTGAACTCGAGAGAACCA---AAGGTTATCAACGGTCCAGAAGTCTTGAATAAATATGTT 3308
Query 19471 GGTCAATCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGT 19530
||||| || ||||| || | ||| | ||||| || || || |||| | ||
Sbjct 3309 GGTCAGTCCGAAGAGAACATCCGAAAACTCTTTGCAGATGCAGAGAAAGAGTATAAGGAG 3368
Query 19531 TTAGGGCGCAAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAG 19590
||| | ||| | | || || || || | ||||| ||||| || |||| ||
Sbjct 3369 AAAGGAGATGAGAGTGGTCTTCATATCATCATTTTTGATGAGTTGGATGCCGTCTGCAAA 3428
Query 19591 CAAAGAGGTTCTGG---------TGTAAATGGAGTACATGACACTGTTGTCAATCAACTC 19641
|| |||||| ||| || || ||| || ||||| ||| |||||||||||
Sbjct 3429 CAGAGAGGTAGTGGGGCCGGTGGTGGAACTGGTGTTGGTGACAGTGTCGTCAATCAACTT 3488
Query 19642 CTGTCAAAATTAGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAAT 19701
|| || || | || |||||| | || || || ||||| || | ||||| ||||| |||
Sbjct 3489 CTCTCCAAGCTTGATGGTGTTGATCAGCTCAACAATATCCTACTCATTGGTATGACCAAT 3548
Query 19702 AGACTGGAATTAATAGACAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAA 19761
| |||| | || || |||||| | || || || || |||||| | | || ||
Sbjct 3549 CGTATGGATATGATTGATGACGCCTTGCTGCGTCCTGGACGTTTGGAAGTTCACATGGAG 3608
Query 19762 ATTAACTTACCCGATGAATGTGGACGTGTGGAAATTTTAAACATACATACATC 19814
||| | || || || ||| || | ||||||| || || ||||| ||
Sbjct 3609 ATTTCGCTTCCAGACGAGGCTGGCCGAGCCCAAATTTTGAAGATTCATACTTC 3661
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397443449208955
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |