Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19]
2,591 sequences; 63,226,382 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq2371 286 4e-72
seq1 118 1e-21
seq2036 105 8e-18
>seq2371
Length=131994
Score = 286 bits (316), Expect = 4e-72
Identities = 1182/1824 (65%), Gaps = 53/1824 (3%)
Strand=Plus/Minus
Query 110354 GCCTTTGATCGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTAC-ATATG 110412
||| ||| |||||||||||||| || ||||| || || ||||| || | | | |||
Sbjct 29110 GCCATTGTACGGAGATAGTACATTCCAGTCTTAAGACCCAACTTCCA-GCCTGCGAAATG 29052
Query 110413 CATAGAAGAGAGCTTGGACATCGTTGGACTTTCCATGAAGAGGTTCATACTTTGACTTTG 110472
|||| | | ||| ||| |||||| | |||| || |||||| |||| |||
Sbjct 29051 CATACTGGTAATCTTCCCCATGGTTGGATCCTTCATGTGGATGTTCATTGATTGAGATTG 28992
Query 110473 GTCAATGAAGCGCCCC-CGTTGTGCCGCCATATCAATGACA-TCCTTCATCTTA-ATTTC 110529
|||||||| ||| || || | || ||||| | || || | | | | | | |||||
Sbjct 28991 ATCAATGAA-CGCACCACGGTCGGCAGCCATCTGAACGATGGTACGT--TGTGAGATTTC 28935
Query 110530 CCAAACTGTGCGATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGA 110589
|||||| || || || |||||||||| ||||||| | || | || || |||||
Sbjct 28934 CCAAACAGTCTTGTAAAGGGCCTTGATATCAGCTGGGATGTTTGGAACGTTTTGAATGGA 28875
Query 110590 ACCCCCCGCCTTCACCATGAGA---TCCTTCATATCCTTGGACCAGAGACCAATCTTCTT 110646
|| || | | || |||| | | ||||| | | |||||| || || || |
Sbjct 28874 TCCACC-GTCAGCA--ATGATACGGTTTTTCATGTTATCGGACCACAGTCCCATATCAAC 28818
Query 110647 GAGGTCATTGACGAGGTGCTTG-TTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCA 110705
|| || |||| || | | | ||||||| ||||| || || || | ||
Sbjct 28817 CAGATCCTTGA-GAAGCCATGGATTGACAACTTGGAACTCTCCAGCAAGAACACGTCGAG 28759
Query 110706 GGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGA-TTTGTGCGGTG 110764
||||||||| | |||||||| || ||||| || || | |||||| |||| |||
Sbjct 28758 AGTAGATGTTGGAGGTGTATGGCTCGAAGCACTCGTTGA-ATCCAAGAATTTGACTGGTA 28700
Query 110765 GAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGT 110824
||| |||||||| || || | | | |||||| || | ||| | | || |
Sbjct 28699 CTGGCAGTTGGCATAGGAGCGACGAGCAAACTGTTGCGGATACCATGTTGAGCAATCTGC 28640
Query 110825 TCCTTGAGAACATCCCAGTCGTAGTTGAGC--TTGGTTTCACCTTCCCACATGTCAAACT 110882
| ||| | | |||| || | || | | ||| | || ||||||||||| | |
Sbjct 28639 TGCTTTAAGCTAGCCCAATCCCAAA-GATCCGTAGGTGTAACAC-CCCACATGTCATATT 28582
Query 110883 GAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAG 110942
| ||| | || | ||| || || || || | | || ||||| | ||| || | |
Sbjct 28581 GGAGCTCGCCCTTGGAGGCAGGTGAGCCTTGGTAAGTCTCATATGTACCATGAATCTTTG 28522
Query 110943 CCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCA 111002
|||| || | || || | ||||| || |||||||| ||||| | || |
Sbjct 28521 CCAACTCCATGGAAGCAGTCAAAGCAGCGTGGTAAATGGTTTCGAAGATTTGGATGTTGA 28462
Query 111003 TCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAA--AATAAATACATCCGCGAG 111060
| |||||| || || || |||| | || | | | || ||| |||| || ||
Sbjct 28461 GGTGCTTGGCCTCTGGGGACTCGAATG-GAAGACGAAGAGCCAAGAAAG-CATCAGCAAG 28404
Query 111061 ACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA-- 111118
|||||| ||||| | | ||||||||||||| || | ||| ||||| || |||
Sbjct 28403 ACCTTGGACACCAAGAGCAATAGGTCTGTGGCGGAAATTGCTCTTTCTTGC---CTCGGG 28347
Query 111119 -ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGT-GA 111176
|| || || | || | || || | ||| | || ||| |||| ||| | ||
Sbjct 28346 CACAGGGTAGTAGTTGATATCGATAATCTTGTTCAAGTTCTTGACGACAA-CTTGGCAGA 28288
Query 111177 TTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGG 111236
|| ||||| || | | ||| ||||| ||||| |||| ||||| |||| || |
Sbjct 28287 CCTCGTGAAGCTTCTGGAAGTCATAAGTGGCAGTCTTCTCATCAACATATGTTGGGAGAG 28228
Query 111237 CGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTG 111296
| | |||||||| ||||||||||| |||||| | ||| || | |||||| |
Sbjct 28227 CCAGCGATGCCAAGTTGCAAACAGCAACCTCATCAGGTGCACAGTATTCGACAATTTCAG 28168
Query 111297 TACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACG 111356
|||| |||||||| || || || || | |||||||||||| ||||| |||||| |
Sbjct 28167 TACACAAGTTGGAGCTTCGGATGGTACCAAGATTCTTTTGGTTGCTCTTTCGGTTGCAAG 28108
Query 111357 CATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCC 111416
|||||||||| |||||| | || | || ||||| || || | | ||| |||| | ||
Sbjct 28107 CATCCTTGTAAAGCATGAAAGGGTTTCCAGTCTCGGTTTGAGCCTCGAGGATAGAGTACC 28048
Query 111417 AAACATCGGCGGC--TGGTACAATGGCGTTGGCCCGT-CCCTCCGCCTCGTACTTTGTGT 111473
||| | ||| || | | | || ||||| | ||||| | |||||| || ||
Sbjct 28047 AAAGCTTTTGGGCCTTGATGCTCTTGC---GGCCCTTGCCCTCAGACTCGTATTTCTCGT 27991
Query 111474 AGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGA 111533
| | || || || || ||||| |||||| | ||| || || | || || |
Sbjct 27990 ACAAAGCCTCGAATTCGTCACCGTAGACGTCGGCCAAACCAGGACACTCATTAGGGCACA 27931
Query 111534 AAAGAGACCATTGACCACCTTC--CTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAG 111591
| | ||| | | | ||| ||||| ||||||||||| || ||||||||||| ||
Sbjct 27930 TCAATGTCCA--GTCAAGGTTCTTTTCAACACGCTTCATGAAGAGATCTGGAATCCAGAG 27873
Query 111592 GGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAG 111651
|| | || ||||| | ||| |||| || | || ||||| ||| | || ||
Sbjct 27872 GGCGTAGAAAAGATCACGGGCACGAACCTCCTCCTTTCCGTGGTTCTTTCGGAGGTCGAG 27813
Query 111652 GAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG--- 111708
|||||| | | ||| |||||||||||||| || |||| |||| || || |||
Sbjct 27812 GAACTCGAAAACATCGGCGTGCCATGGCTCGAGGTAGATGGCGAAAGCACCAGGTCGCTT 27753
Query 111709 ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAAT 111768
||| |||||| ||||| || || ||| ||| || || |||||||| |||| ||
Sbjct 27752 GTTACCACCTTGATCAACATATCGAGCGGTGTTGTTGAAAACCCGAAGCATAGGAACGAT 27693
Query 111769 ACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGAT 111828
|| | || | || ||||| || ||| || | |||| | | || |
Sbjct 27692 TCCGTTGGAGTTTCCGTTTGTACCGGCAATGTAAGCACCAGTGGCGCGGATTCTGTGAAC 27633
Query 111829 GTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATA 111888
| | || ||||| || || |||||| || ||||| | | | ||| | ||
Sbjct 27632 ATTGAGTCCGATACCACCTGCGTTCTTTGAAATCATGGCACAAATCTTCAAAGTGTCGTA 27573
Query 111889 GATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCT 111948
|||||| | || ||||||||| || |||| |||||||| || | || |
Sbjct 27572 GATACCATCAATGCTGTCCTCCTTCATGTCGATGAGGAAGCATGAAGAAAGTTGTGCCTG 27513
Query 111949 TGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG--GGACATC 112006
||||||||||||| || || ||||||| ||||| |||| || |||| |||||||
Sbjct 27512 TGGTGTACCAGCAGCAAAAAGTGTTGGTGAGGCGTGGGTGAA-GTA-CTTGCTGGACATC 27455
Query 112007 TTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGC 112066
|| ||| || || | | ||| ||||| || || ||||| || |||| ||||| |||
Sbjct 27454 AAGTTGTAAGTTTCGATGGCAGCCTCAATATCCTCGCCGTGTATTCCGACAGCGACACGC 27395
Query 112067 ATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATA-GCTCTT 112125
|||| ||| | ||||| ||| || |||||||||| || | ||||| | ||
Sbjct 27394 ATGATCATATGTTGTGGACGTTCGCAGATCTTGCCATCGAGGCGGAGGAGATATGATC-G 27336
Query 112126 CTCAAGGGTTTTGAGACCAAAGTA 112149
||| ||||| |||| |||||||||
Sbjct 27335 CTCGAGGGTCTTGAAACCAAAGTA 27312
>seq1
Length=509191
Score = 118 bits (130), Expect = 1e-21
Identities = 321/481 (67%), Gaps = 34/481 (7%)
Strand=Plus/Minus
Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAA--TGC-CAGTCTCATTGTCA 11539
||||||| |||| | || ||| | |||| |||||| | ||| ||| ||||
Sbjct 194847 TCAAGGACATCCGATCTGTTGGTGCCAGCAAGAACCACCACCTGCTCAGCAGTATTG--- 194791
Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGC 11599
|| |||||||||||||| | | ||||| | || |||| |||||||||| |
Sbjct 194790 AAACCATCCATCTCGGTTAAGATCTGATTGAGAGTGGCCTCTCGCTCATCATTTCC---- 194735
Query 11600 ATACCACC-----AGC-ACTG------CGTTGCTTGCCCACCGCATCAATCTCATCAATG 11647
|||||| ||| ||| || ||| || | |||||| || |||||||||
Sbjct 194734 --ACCACCGAATGAGCCACTCTTTCCACGAGCCTTTCCAATCGCATCGATTTCATCAATG 194677
Query 11648 AAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCA 11707
|||| |||||| || ||| | | ||| || | |||||||| ||||| || |||
Sbjct 194676 AAGATAATACAAGGGGTATTCTTTCTGGCCATAGCGAAGAGATCTCGAACTCTGGAAGCA 194617
Query 11708 CCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAG-CACTGGATGAATGGGACATT 11766
|| ||||||||||||||||||||||| | | || | |||| || ||| || |||
Sbjct 194616 CCAACACCAACAAACATCTCCACAAACTCGGAACCACTGACACT-GAAGAAAGGCACACC 194558
Query 11767 TGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAG 11826
|||||| || || |||| || || | ||||| || ||||| || || | ||
Sbjct 194557 TGATTCTCCAGCTGTGGCCTTTGCTAGTAAAGTCTTACCAGTACCGGGTGGCCCAGAAAG 194498
Query 11827 AAGGGCGCCTCGGGGGATCTTGGCACC---ACTTCCAAAATATCTCTCGGGTTGCTTGAG 11883
| ||| ||||| |||||||| ||||| ||| | | || ||| ||| ||| ||
Sbjct 194497 GATGGCTCCTCGAGGGATCTTAGCACCCAATCTTTCGA---ATTGCTCCGGTGTCTTTAG 194441
Query 11884 AAAATCCAC-AATCTCTTCAAGTTCATCTTTGGCCGCGTCAATCCCCTCAACATCACTGA 11942
||| || ||| | | | | |||| ||||| |||| || ||| ||||||| |||
Sbjct 194440 GAAAGAAACGAATTCCATAATCTCCATC-TTGGCTTCGTCCATACCCGCAACATCCTTGA 194382
Query 11943 A 11943
|
Sbjct 194381 A 194381
>seq2036
Length=314316
Score = 105 bits (116), Expect = 8e-18
Identities = 153/213 (72%), Gaps = 6/213 (3%)
Strand=Plus/Plus
Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729
||||||||||||||| ||||| || | || || |||||| ||||| | |||||| ||
Sbjct 235917 GTGGAGACCCTCATCACGGGAGATCAACTCGTTGGAGAAGGTAAGACCAGCCATGAGGCC 235976
Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789
|||||||||||||| | || | ||| || || ||||||||||||||| |||
Sbjct 235977 ACGCTTCTTCAACCAGAAGATGGATGCGAAAGAACCACTGAAGAAGATACCCTCAACAGC 236036
Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACT--TTG-CATCAAACCATTTCAT 122846
||||| |||| ||| |||| || |||| ||||| ||| | | | |||| |
Sbjct 236037 AGCAAAGGCAACAAGACGTTGAGCAAAGG---TAGACTCCTTGTCTTGGATCCATCGGAC 236093
Query 122847 TGCCCATTTCGCCTTCTTCTCAATACATGGTAC 122879
||||| | |||||||||| ||| || || ||
Sbjct 236094 AGCCCAATCAGCCTTCTTCTTAATGCAAGGAAC 236126
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 628011659613600
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