Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19] 2,591 sequences; 63,226,382 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq2371 286 4e-72 seq1 118 1e-21 seq2036 105 8e-18 >seq2371 Length=131994 Score = 286 bits (316), Expect = 4e-72 Identities = 1182/1824 (65%), Gaps = 53/1824 (3%) Strand=Plus/Minus Query 110354 GCCTTTGATCGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTAC-ATATG 110412 ||| ||| |||||||||||||| || ||||| || || ||||| || | | | ||| Sbjct 29110 GCCATTGTACGGAGATAGTACATTCCAGTCTTAAGACCCAACTTCCA-GCCTGCGAAATG 29052 Query 110413 CATAGAAGAGAGCTTGGACATCGTTGGACTTTCCATGAAGAGGTTCATACTTTGACTTTG 110472 |||| | | ||| ||| |||||| | |||| || |||||| |||| ||| Sbjct 29051 CATACTGGTAATCTTCCCCATGGTTGGATCCTTCATGTGGATGTTCATTGATTGAGATTG 28992 Query 110473 GTCAATGAAGCGCCCC-CGTTGTGCCGCCATATCAATGACA-TCCTTCATCTTA-ATTTC 110529 |||||||| ||| || || | || ||||| | || || | | | | | | ||||| Sbjct 28991 ATCAATGAA-CGCACCACGGTCGGCAGCCATCTGAACGATGGTACGT--TGTGAGATTTC 28935 Query 110530 CCAAACTGTGCGATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGA 110589 |||||| || || || |||||||||| ||||||| | || | || || ||||| Sbjct 28934 CCAAACAGTCTTGTAAAGGGCCTTGATATCAGCTGGGATGTTTGGAACGTTTTGAATGGA 28875 Query 110590 ACCCCCCGCCTTCACCATGAGA---TCCTTCATATCCTTGGACCAGAGACCAATCTTCTT 110646 || || | | || |||| | | ||||| | | |||||| || || || | Sbjct 28874 TCCACC-GTCAGCA--ATGATACGGTTTTTCATGTTATCGGACCACAGTCCCATATCAAC 28818 Query 110647 GAGGTCATTGACGAGGTGCTTG-TTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCA 110705 || || |||| || | | | ||||||| ||||| || || || | || Sbjct 28817 CAGATCCTTGA-GAAGCCATGGATTGACAACTTGGAACTCTCCAGCAAGAACACGTCGAG 28759 Query 110706 GGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGA-TTTGTGCGGTG 110764 ||||||||| | |||||||| || ||||| || || | |||||| |||| ||| Sbjct 28758 AGTAGATGTTGGAGGTGTATGGCTCGAAGCACTCGTTGA-ATCCAAGAATTTGACTGGTA 28700 Query 110765 GAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGT 110824 ||| |||||||| || || | | | |||||| || | ||| | | || | Sbjct 28699 CTGGCAGTTGGCATAGGAGCGACGAGCAAACTGTTGCGGATACCATGTTGAGCAATCTGC 28640 Query 110825 TCCTTGAGAACATCCCAGTCGTAGTTGAGC--TTGGTTTCACCTTCCCACATGTCAAACT 110882 | ||| | | |||| || | || | | ||| | || ||||||||||| | | Sbjct 28639 TGCTTTAAGCTAGCCCAATCCCAAA-GATCCGTAGGTGTAACAC-CCCACATGTCATATT 28582 Query 110883 GAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAG 110942 | ||| | || | ||| || || || || | | || ||||| | ||| || | | Sbjct 28581 GGAGCTCGCCCTTGGAGGCAGGTGAGCCTTGGTAAGTCTCATATGTACCATGAATCTTTG 28522 Query 110943 CCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCA 111002 |||| || | || || | ||||| || |||||||| ||||| | || | Sbjct 28521 CCAACTCCATGGAAGCAGTCAAAGCAGCGTGGTAAATGGTTTCGAAGATTTGGATGTTGA 28462 Query 111003 TCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAA--AATAAATACATCCGCGAG 111060 | |||||| || || || |||| | || | | | || ||| |||| || || Sbjct 28461 GGTGCTTGGCCTCTGGGGACTCGAATG-GAAGACGAAGAGCCAAGAAAG-CATCAGCAAG 28404 Query 111061 ACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA-- 111118 |||||| ||||| | | ||||||||||||| || | ||| ||||| || ||| Sbjct 28403 ACCTTGGACACCAAGAGCAATAGGTCTGTGGCGGAAATTGCTCTTTCTTGC---CTCGGG 28347 Query 111119 -ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGT-GA 111176 || || || | || | || || | ||| | || ||| |||| ||| | || Sbjct 28346 CACAGGGTAGTAGTTGATATCGATAATCTTGTTCAAGTTCTTGACGACAA-CTTGGCAGA 28288 Query 111177 TTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGG 111236 || ||||| || | | ||| ||||| ||||| |||| ||||| |||| || | Sbjct 28287 CCTCGTGAAGCTTCTGGAAGTCATAAGTGGCAGTCTTCTCATCAACATATGTTGGGAGAG 28228 Query 111237 CGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTG 111296 | | |||||||| ||||||||||| |||||| | ||| || | |||||| | Sbjct 28227 CCAGCGATGCCAAGTTGCAAACAGCAACCTCATCAGGTGCACAGTATTCGACAATTTCAG 28168 Query 111297 TACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACG 111356 |||| |||||||| || || || || | |||||||||||| ||||| |||||| | Sbjct 28167 TACACAAGTTGGAGCTTCGGATGGTACCAAGATTCTTTTGGTTGCTCTTTCGGTTGCAAG 28108 Query 111357 CATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCC 111416 |||||||||| |||||| | || | || ||||| || || | | ||| |||| | || Sbjct 28107 CATCCTTGTAAAGCATGAAAGGGTTTCCAGTCTCGGTTTGAGCCTCGAGGATAGAGTACC 28048 Query 111417 AAACATCGGCGGC--TGGTACAATGGCGTTGGCCCGT-CCCTCCGCCTCGTACTTTGTGT 111473 ||| | ||| || | | | || ||||| | ||||| | |||||| || || Sbjct 28047 AAAGCTTTTGGGCCTTGATGCTCTTGC---GGCCCTTGCCCTCAGACTCGTATTTCTCGT 27991 Query 111474 AGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGA 111533 | | || || || || ||||| |||||| | ||| || || | || || | Sbjct 27990 ACAAAGCCTCGAATTCGTCACCGTAGACGTCGGCCAAACCAGGACACTCATTAGGGCACA 27931 Query 111534 AAAGAGACCATTGACCACCTTC--CTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAG 111591 | | ||| | | | ||| ||||| ||||||||||| || ||||||||||| || Sbjct 27930 TCAATGTCCA--GTCAAGGTTCTTTTCAACACGCTTCATGAAGAGATCTGGAATCCAGAG 27873 Query 111592 GGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAG 111651 || | || ||||| | ||| |||| || | || ||||| ||| | || || Sbjct 27872 GGCGTAGAAAAGATCACGGGCACGAACCTCCTCCTTTCCGTGGTTCTTTCGGAGGTCGAG 27813 Query 111652 GAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG--- 111708 |||||| | | ||| |||||||||||||| || |||| |||| || || ||| Sbjct 27812 GAACTCGAAAACATCGGCGTGCCATGGCTCGAGGTAGATGGCGAAAGCACCAGGTCGCTT 27753 Query 111709 ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAAT 111768 ||| |||||| ||||| || || ||| ||| || || |||||||| |||| || Sbjct 27752 GTTACCACCTTGATCAACATATCGAGCGGTGTTGTTGAAAACCCGAAGCATAGGAACGAT 27693 Query 111769 ACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGAT 111828 || | || | || ||||| || ||| || | |||| | | || | Sbjct 27692 TCCGTTGGAGTTTCCGTTTGTACCGGCAATGTAAGCACCAGTGGCGCGGATTCTGTGAAC 27633 Query 111829 GTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATA 111888 | | || ||||| || || |||||| || ||||| | | | ||| | || Sbjct 27632 ATTGAGTCCGATACCACCTGCGTTCTTTGAAATCATGGCACAAATCTTCAAAGTGTCGTA 27573 Query 111889 GATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCT 111948 |||||| | || ||||||||| || |||| |||||||| || | || | Sbjct 27572 GATACCATCAATGCTGTCCTCCTTCATGTCGATGAGGAAGCATGAAGAAAGTTGTGCCTG 27513 Query 111949 TGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG--GGACATC 112006 ||||||||||||| || || ||||||| ||||| |||| || |||| ||||||| Sbjct 27512 TGGTGTACCAGCAGCAAAAAGTGTTGGTGAGGCGTGGGTGAA-GTA-CTTGCTGGACATC 27455 Query 112007 TTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGC 112066 || ||| || || | | ||| ||||| || || ||||| || |||| ||||| ||| Sbjct 27454 AAGTTGTAAGTTTCGATGGCAGCCTCAATATCCTCGCCGTGTATTCCGACAGCGACACGC 27395 Query 112067 ATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATA-GCTCTT 112125 |||| ||| | ||||| ||| || |||||||||| || | ||||| | || Sbjct 27394 ATGATCATATGTTGTGGACGTTCGCAGATCTTGCCATCGAGGCGGAGGAGATATGATC-G 27336 Query 112126 CTCAAGGGTTTTGAGACCAAAGTA 112149 ||| ||||| |||| ||||||||| Sbjct 27335 CTCGAGGGTCTTGAAACCAAAGTA 27312 >seq1 Length=509191 Score = 118 bits (130), Expect = 1e-21 Identities = 321/481 (67%), Gaps = 34/481 (7%) Strand=Plus/Minus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAA--TGC-CAGTCTCATTGTCA 11539 ||||||| |||| | || ||| | |||| |||||| | ||| ||| |||| Sbjct 194847 TCAAGGACATCCGATCTGTTGGTGCCAGCAAGAACCACCACCTGCTCAGCAGTATTG--- 194791 Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGC 11599 || |||||||||||||| | | ||||| | || |||| |||||||||| | Sbjct 194790 AAACCATCCATCTCGGTTAAGATCTGATTGAGAGTGGCCTCTCGCTCATCATTTCC---- 194735 Query 11600 ATACCACC-----AGC-ACTG------CGTTGCTTGCCCACCGCATCAATCTCATCAATG 11647 |||||| ||| ||| || ||| || | |||||| || ||||||||| Sbjct 194734 --ACCACCGAATGAGCCACTCTTTCCACGAGCCTTTCCAATCGCATCGATTTCATCAATG 194677 Query 11648 AAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCA 11707 |||| |||||| || ||| | | ||| || | |||||||| ||||| || ||| Sbjct 194676 AAGATAATACAAGGGGTATTCTTTCTGGCCATAGCGAAGAGATCTCGAACTCTGGAAGCA 194617 Query 11708 CCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAG-CACTGGATGAATGGGACATT 11766 || ||||||||||||||||||||||| | | || | |||| || ||| || ||| Sbjct 194616 CCAACACCAACAAACATCTCCACAAACTCGGAACCACTGACACT-GAAGAAAGGCACACC 194558 Query 11767 TGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAG 11826 |||||| || || |||| || || | ||||| || ||||| || || | || Sbjct 194557 TGATTCTCCAGCTGTGGCCTTTGCTAGTAAAGTCTTACCAGTACCGGGTGGCCCAGAAAG 194498 Query 11827 AAGGGCGCCTCGGGGGATCTTGGCACC---ACTTCCAAAATATCTCTCGGGTTGCTTGAG 11883 | ||| ||||| |||||||| ||||| ||| | | || ||| ||| ||| || Sbjct 194497 GATGGCTCCTCGAGGGATCTTAGCACCCAATCTTTCGA---ATTGCTCCGGTGTCTTTAG 194441 Query 11884 AAAATCCAC-AATCTCTTCAAGTTCATCTTTGGCCGCGTCAATCCCCTCAACATCACTGA 11942 ||| || ||| | | | | |||| ||||| |||| || ||| ||||||| ||| Sbjct 194440 GAAAGAAACGAATTCCATAATCTCCATC-TTGGCTTCGTCCATACCCGCAACATCCTTGA 194382 Query 11943 A 11943 | Sbjct 194381 A 194381 >seq2036 Length=314316 Score = 105 bits (116), Expect = 8e-18 Identities = 153/213 (72%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 ||||||||||||||| ||||| || | || || |||||| ||||| | |||||| || Sbjct 235917 GTGGAGACCCTCATCACGGGAGATCAACTCGTTGGAGAAGGTAAGACCAGCCATGAGGCC 235976 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 |||||||||||||| | || | ||| || || ||||||||||||||| ||| Sbjct 235977 ACGCTTCTTCAACCAGAAGATGGATGCGAAAGAACCACTGAAGAAGATACCCTCAACAGC 236036 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACT--TTG-CATCAAACCATTTCAT 122846 ||||| |||| ||| |||| || |||| ||||| ||| | | | |||| | Sbjct 236037 AGCAAAGGCAACAAGACGTTGAGCAAAGG---TAGACTCCTTGTCTTGGATCCATCGGAC 236093 Query 122847 TGCCCATTTCGCCTTCTTCTCAATACATGGTAC 122879 ||||| | |||||||||| ||| || || || Sbjct 236094 AGCCCAATCAGCCTTCTTCTTAATGCAAGGAAC 236126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628011659613600