Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19]
2,591 sequences; 63,226,382 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq2371 241 2e-58
seq2036 111 2e-19
>seq2371
Length=131994
Score = 241 bits (266), Expect = 2e-58
Identities = 1176/1843 (64%), Gaps = 45/1843 (2%)
Strand=Plus/Minus
Query 117805 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 117864
||||||| |||||| || ||| ||| ||||| |||||||| || ||||| || |
Sbjct 29133 TGAACTGGATGGGTGCCGAGGCAGCCATTGTACGGAGATAGTACATTCCAGTCTTAAGAC 29074
Query 117865 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGGGTTGGACTTTCCATGA 117924
|| ||||||| | | |||||| || | ||| | ||||||| | ||||
Sbjct 29073 CCAACTTCCAGCCTGCGAAATGCATACTGGTAATCTTCCCCATGGTTGGATCCTTCATGT 29014
Query 117925 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCA 117984
|| |||||| ||| |||||||| ||||| || || || || ||||| | || |
Sbjct 29013 GGATGTTCATTGATTGAGATTGATCAATGAACGCACCACGGTCGGCAGCCATCTGAACGA 28954
Query 117985 CATCCTTCATCTTGA--TTTCCCACACAGTCCTGTAGAGGTTCTTAATATCATCTGGGAT 118042
| | | | ||| ||||||| |||||| |||| ||| ||| |||||| |||||||
Sbjct 28953 --TGGTACGTTGTGAGATTTCCCAAACAGTCTTGTAAAGGGCCTTGATATCAGCTGGGAT 28896
Query 118043 ATCCACGATATTTTGGATGGATCCACCCGCCTTGACCATGAGATCCTTCATATCCTTTGA 118102
| | ||||| ||||||||||| | | || | | ||||| | | ||
Sbjct 28895 GTTTGGAACGTTTTGAATGGATCCACCGTCAGCAATGATACGGTTTTTCATGTTATCGGA 28836
Query 118103 CCAGAGACCAATCTTTTTGAGATCCTCCACGAG--ATGCTTATTGACAACAACAAACTCA 118160
||| || || || | ||||||| | || ||| ||||||||| |||||
Sbjct 28835 CCACAGTCCCATATCAACCAGATCCTTGAGAAGCCATGG--ATTGACAACTTGGAACTCT 28778
Query 118161 CCCGCGAGGGTGCGTCTCAGA-TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTT 118219
|| || || |||| ||| ||||| |||| ||||||||||| |||||||| |||
Sbjct 28777 CCAGCAAGAACACGTCG-AGAGTAGATGTTGGAGGTGTATGGCTCGAAGCACTCGTTGA- 28720
Query 118220 ACCCAAGATTTGGGCTG-TGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGA 118278
| |||||| || | ||| | ||| || ||||| || || | ||| | ||||| ||||
Sbjct 28719 ATCCAAGAATTTGACTGGTACTGGCAGTTGGCATAGGAGCGACGAGCAAACTGTTGCGGA 28660
Query 118279 GACCCTTTTCCCTAATGCGTTCCTTGAGAGCGT-CCCAGTCGTAGTTGAGCTTT--GTCT 118335
||| | || ||| | | ||| | ||| |||| || | || | | || |
Sbjct 28659 TACCATGTTGAGCAATCTGCTGCTTTA-AGCTAGCCCAATCCCAAA-GATCCGTAGGTGT 28602
Query 118336 CCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCT 118395
| | |||||| ||| | ||||| || | ||| || || || || | | ||||
Sbjct 28601 AACACC-CCACATGTCATATTGGAGCTCGCCCTTGGAGGCAGGTGAGCCTTGGTAAGTCT 28543
Query 118396 CATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTG 118455
|||||| || | || || ||||| || | || | || ||||| || || |
Sbjct 28542 CATATGTACCATGAATCTTTGCCAACTCCATGGAAGCAGTCAAAGCAGCGTGGTAAATGG 28483
Query 118456 TTTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGC-AC 118514
|||| || || | || | ||||||||| ||| || || | || || |
Sbjct 28482 TTTCGAAGATTTGGATGTTGAGGTGCTTGGCCTCTGGGGACTCGAATGGAAGACGAAGAG 28423
Query 118515 AAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTA 118574
|| ||| |||| || |||||||||||||| || |||| || | || | | |||
Sbjct 28422 CCAAGAAAG-CATCAGCAAGACCTTGGACACCAAGAGCAATAGGTCTGTGGCGGAAATTG 28364
Query 118575 GACTTCCGAGCGGTCTC---CACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTT 118631
||| | || ||| ||| || || | || ||||||||| | | || | ||
Sbjct 28363 CTCTTTCTTGC---CTCGGGCACAGGGTAGTAGTTGATATCGATAATCTTGTTCAAGTTC 28307
Query 118632 TTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCA 118691
||| |||||| | || || |||||||| | | | ||| || || ||||| |||
Sbjct 28306 TTGACGACAACTTGGCAGACCTCGTGAAGCTTCTGGAAGTCATAAGTGGCAGTCTTCTCA 28247
Query 118692 TTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCA 118751
| ||||| | || || || | || |||| || || |||| |||||| ||
Sbjct 28246 TCAACATATGTTGGGAGAGCCAGCGATGCCAAGTTGCAAACAGCAACCTCATCAGGTGCA 28187
Query 118752 GTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGA 118811
||| || | |||||| || |||||||| || || ||||| || | ||||||||
Sbjct 28186 CAGTATTCGACAATTTCAGTACACAAGTTGGAGCTTCGGATGGTACCAAGATTCTTTTGG 28127
Query 118812 TTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGG 118871
|| |||| ||| || |||||||||||||||||| | || | || ||||| |||||
Sbjct 28126 TTGCTCTTTCGGTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCAGTCTCGGTTTGA 28067
Query 118872 GACTTGAGAATAGCCTTCC--AGACATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCT 118929
| || ||| |||| | || || | || || | | ||| | | ||||
Sbjct 28066 GCCTCGAGGATAGAGTACCAAAGCTTTTGGGCCTTGATGCTCTTGCG--GCCCTTGCCCT 28009
Query 118930 CTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTG 118989
| |||||| || ||| | || || || || ||||| | | || | | || |
Sbjct 28008 CAGACTCGTATTTCTCGTACAAAGCCTCGAATTCGTCACCGTAGACGTCGGCCAAACCAG 27949
Query 118990 GTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGA 119049
| || || ||||| | | | ||| | | || ||||| |||||||||||||
Sbjct 27948 GACACTCATTAGGGCACATCAATGTCCAGTCAAGGTTCTTTTCAACACGCTTCATGAAGA 27889
Query 119050 GGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGAT 119109
| ||||| |||||||| || |||| ||||| || ||| | || || | || || |
Sbjct 27888 GATCTGGAATCCAGAGGGCGTAGAAAAGATCACGGGCACGAACCTCCTCCTTTCCGTGGT 27829
Query 119110 TGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGA 119169
| || | || | || || | | ||| |||||||| || || ||||| | ||||
Sbjct 27828 TCTTTCGGAGGTCGAGGAACTCGAAAACATCGGCGTGCCATGGCTCGAGGTAGATGGCGA 27769
Query 119170 TTGACCCCTTACGACG------ACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATA 119223
| || | | || |||| | || | ||||| | || ||| ||| || |
Sbjct 27768 AAGCACC---AGGTCGCTTGTTACCACCTTGATCAACATATCGAGCGGTGTTGTTGAAAA 27712
Query 119224 CACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTAT 119283
| |||||||| |||| ||| || | ||| | || ||||| || ||| || |
Sbjct 27711 CCCGAAGCATAGGAACGATTCCGTTGGAGTTTCCGTTTGTACCGGCAATGTAAGCACCAG 27652
Query 119284 TGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGC 119343
|||| | || ||| | | | || ||||| ||||| |||||| || || |
Sbjct 27651 TGGCGCGGATTCTGTGAACATTGAGTCCGATACCACCTGCGTTCTTTGAAATCATGGCAC 27592
Query 119344 ACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGC 119403
| | | | | || ||||||| ||||| || ||| |||| | ||||||||||||
Sbjct 27591 AAATCTTCAAAGTGTCGTAGATACCATCAATGCTGTCCTCCTTCATGTCGATGAGGAAGC 27532
Query 119404 AGCTCGACATTTGAGGCCTG-GGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATG 119462
| || | ||| ||||| ||||||||||| || || ||||||| |||||| ||
Sbjct 27531 ATGAAGAAAGTTG-TGCCTGTGGTGTACCAGCAGCAAAAAGTGTTGGTGAGGCGTGGGTG 27473
Query 119463 AACATACCTTG--GGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGT 119520
|| || |||| ||||||| || ||| || || | | | || ||| || || ||||
Sbjct 27472 AA-GTA-CTTGCTGGACATCAAGTTGTAAGTTTCGATGGCAGCCTCAATATCCTCGCCGT 27415
Query 119521 GAATACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGA 119580
| || |||| | ||| ||||| | ||| | ||| || ||| | | |||||||
Sbjct 27414 GTATTCCGACAGCGACACGCATGATCATATGTTGTGGACGTTCGCAGATCTTGCCATCGA 27355
Query 119581 GCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGAGACCAAAATA 119623
| | |||| || ||| | |||||||| |||||| ||
Sbjct 27354 GGCGGAGGAGATATGATCGCTCGAGGGTCTTGAAACCAAAGTA 27312
>seq2036
Length=314316
Score = 111 bits (122), Expect = 2e-19
Identities = 114/149 (77%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086
|||||||||||| ||||||||||| | || || |||||| ||||| | |||||| ||
Sbjct 235917 GTGGAGACCCTCATCACGGGAGATCAACTCGTTGGAGAAGGTAAGACCAGCCATGAGGCC 235976
Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146
||||||||||||||||| || | || || ||| ||||||||| ||||| |||
Sbjct 235977 ACGCTTCTTCAACCAGAAGATGGATGCGAAAGAACCACTGAAGAAGATACCCTCAACAGC 236036
Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAAGG 130175
|| || |||| ||||| | ||||||||
Sbjct 236037 AGCAAAGGCAACAAGACGTTGAGCAAAGG 236065
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618415170429960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |