Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19] 2,591 sequences; 63,226,382 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq2371 241 2e-58 seq2036 111 2e-19 >seq2371 Length=131994 Score = 241 bits (266), Expect = 2e-58 Identities = 1176/1843 (64%), Gaps = 45/1843 (2%) Strand=Plus/Minus Query 117805 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 117864 ||||||| |||||| || ||| ||| ||||| |||||||| || ||||| || | Sbjct 29133 TGAACTGGATGGGTGCCGAGGCAGCCATTGTACGGAGATAGTACATTCCAGTCTTAAGAC 29074 Query 117865 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGGGTTGGACTTTCCATGA 117924 || ||||||| | | |||||| || | ||| | ||||||| | |||| Sbjct 29073 CCAACTTCCAGCCTGCGAAATGCATACTGGTAATCTTCCCCATGGTTGGATCCTTCATGT 29014 Query 117925 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCA 117984 || |||||| ||| |||||||| ||||| || || || || ||||| | || | Sbjct 29013 GGATGTTCATTGATTGAGATTGATCAATGAACGCACCACGGTCGGCAGCCATCTGAACGA 28954 Query 117985 CATCCTTCATCTTGA--TTTCCCACACAGTCCTGTAGAGGTTCTTAATATCATCTGGGAT 118042 | | | | ||| ||||||| |||||| |||| ||| ||| |||||| ||||||| Sbjct 28953 --TGGTACGTTGTGAGATTTCCCAAACAGTCTTGTAAAGGGCCTTGATATCAGCTGGGAT 28896 Query 118043 ATCCACGATATTTTGGATGGATCCACCCGCCTTGACCATGAGATCCTTCATATCCTTTGA 118102 | | ||||| ||||||||||| | | || | | ||||| | | || Sbjct 28895 GTTTGGAACGTTTTGAATGGATCCACCGTCAGCAATGATACGGTTTTTCATGTTATCGGA 28836 Query 118103 CCAGAGACCAATCTTTTTGAGATCCTCCACGAG--ATGCTTATTGACAACAACAAACTCA 118160 ||| || || || | ||||||| | || ||| ||||||||| ||||| Sbjct 28835 CCACAGTCCCATATCAACCAGATCCTTGAGAAGCCATGG--ATTGACAACTTGGAACTCT 28778 Query 118161 CCCGCGAGGGTGCGTCTCAGA-TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTT 118219 || || || |||| ||| ||||| |||| ||||||||||| |||||||| ||| Sbjct 28777 CCAGCAAGAACACGTCG-AGAGTAGATGTTGGAGGTGTATGGCTCGAAGCACTCGTTGA- 28720 Query 118220 ACCCAAGATTTGGGCTG-TGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGA 118278 | |||||| || | ||| | ||| || ||||| || || | ||| | ||||| |||| Sbjct 28719 ATCCAAGAATTTGACTGGTACTGGCAGTTGGCATAGGAGCGACGAGCAAACTGTTGCGGA 28660 Query 118279 GACCCTTTTCCCTAATGCGTTCCTTGAGAGCGT-CCCAGTCGTAGTTGAGCTTT--GTCT 118335 ||| | || ||| | | ||| | ||| |||| || | || | | || | Sbjct 28659 TACCATGTTGAGCAATCTGCTGCTTTA-AGCTAGCCCAATCCCAAA-GATCCGTAGGTGT 28602 Query 118336 CCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCT 118395 | | |||||| ||| | ||||| || | ||| || || || || | | |||| Sbjct 28601 AACACC-CCACATGTCATATTGGAGCTCGCCCTTGGAGGCAGGTGAGCCTTGGTAAGTCT 28543 Query 118396 CATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTG 118455 |||||| || | || || ||||| || | || | || ||||| || || | Sbjct 28542 CATATGTACCATGAATCTTTGCCAACTCCATGGAAGCAGTCAAAGCAGCGTGGTAAATGG 28483 Query 118456 TTTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGC-AC 118514 |||| || || | || | ||||||||| ||| || || | || || | Sbjct 28482 TTTCGAAGATTTGGATGTTGAGGTGCTTGGCCTCTGGGGACTCGAATGGAAGACGAAGAG 28423 Query 118515 AAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTA 118574 || ||| |||| || |||||||||||||| || |||| || | || | | ||| Sbjct 28422 CCAAGAAAG-CATCAGCAAGACCTTGGACACCAAGAGCAATAGGTCTGTGGCGGAAATTG 28364 Query 118575 GACTTCCGAGCGGTCTC---CACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTT 118631 ||| | || ||| ||| || || | || ||||||||| | | || | || Sbjct 28363 CTCTTTCTTGC---CTCGGGCACAGGGTAGTAGTTGATATCGATAATCTTGTTCAAGTTC 28307 Query 118632 TTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCA 118691 ||| |||||| | || || |||||||| | | | ||| || || ||||| ||| Sbjct 28306 TTGACGACAACTTGGCAGACCTCGTGAAGCTTCTGGAAGTCATAAGTGGCAGTCTTCTCA 28247 Query 118692 TTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCA 118751 | ||||| | || || || | || |||| || || |||| |||||| || Sbjct 28246 TCAACATATGTTGGGAGAGCCAGCGATGCCAAGTTGCAAACAGCAACCTCATCAGGTGCA 28187 Query 118752 GTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGA 118811 ||| || | |||||| || |||||||| || || ||||| || | |||||||| Sbjct 28186 CAGTATTCGACAATTTCAGTACACAAGTTGGAGCTTCGGATGGTACCAAGATTCTTTTGG 28127 Query 118812 TTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGG 118871 || |||| ||| || |||||||||||||||||| | || | || ||||| ||||| Sbjct 28126 TTGCTCTTTCGGTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCAGTCTCGGTTTGA 28067 Query 118872 GACTTGAGAATAGCCTTCC--AGACATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCT 118929 | || ||| |||| | || || | || || | | ||| | | |||| Sbjct 28066 GCCTCGAGGATAGAGTACCAAAGCTTTTGGGCCTTGATGCTCTTGCG--GCCCTTGCCCT 28009 Query 118930 CTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTG 118989 | |||||| || ||| | || || || || ||||| | | || | | || | Sbjct 28008 CAGACTCGTATTTCTCGTACAAAGCCTCGAATTCGTCACCGTAGACGTCGGCCAAACCAG 27949 Query 118990 GTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGA 119049 | || || ||||| | | | ||| | | || ||||| ||||||||||||| Sbjct 27948 GACACTCATTAGGGCACATCAATGTCCAGTCAAGGTTCTTTTCAACACGCTTCATGAAGA 27889 Query 119050 GGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGAT 119109 | ||||| |||||||| || |||| ||||| || ||| | || || | || || | Sbjct 27888 GATCTGGAATCCAGAGGGCGTAGAAAAGATCACGGGCACGAACCTCCTCCTTTCCGTGGT 27829 Query 119110 TGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGA 119169 | || | || | || || | | ||| |||||||| || || ||||| | |||| Sbjct 27828 TCTTTCGGAGGTCGAGGAACTCGAAAACATCGGCGTGCCATGGCTCGAGGTAGATGGCGA 27769 Query 119170 TTGACCCCTTACGACG------ACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATA 119223 | || | | || |||| | || | ||||| | || ||| ||| || | Sbjct 27768 AAGCACC---AGGTCGCTTGTTACCACCTTGATCAACATATCGAGCGGTGTTGTTGAAAA 27712 Query 119224 CACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTAT 119283 | |||||||| |||| ||| || | ||| | || ||||| || ||| || | Sbjct 27711 CCCGAAGCATAGGAACGATTCCGTTGGAGTTTCCGTTTGTACCGGCAATGTAAGCACCAG 27652 Query 119284 TGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGC 119343 |||| | || ||| | | | || ||||| ||||| |||||| || || | Sbjct 27651 TGGCGCGGATTCTGTGAACATTGAGTCCGATACCACCTGCGTTCTTTGAAATCATGGCAC 27592 Query 119344 ACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGC 119403 | | | | | || ||||||| ||||| || ||| |||| | |||||||||||| Sbjct 27591 AAATCTTCAAAGTGTCGTAGATACCATCAATGCTGTCCTCCTTCATGTCGATGAGGAAGC 27532 Query 119404 AGCTCGACATTTGAGGCCTG-GGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATG 119462 | || | ||| ||||| ||||||||||| || || ||||||| |||||| || Sbjct 27531 ATGAAGAAAGTTG-TGCCTGTGGTGTACCAGCAGCAAAAAGTGTTGGTGAGGCGTGGGTG 27473 Query 119463 AACATACCTTG--GGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGT 119520 || || |||| ||||||| || ||| || || | | | || ||| || || |||| Sbjct 27472 AA-GTA-CTTGCTGGACATCAAGTTGTAAGTTTCGATGGCAGCCTCAATATCCTCGCCGT 27415 Query 119521 GAATACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGA 119580 | || |||| | ||| ||||| | ||| | ||| || ||| | | ||||||| Sbjct 27414 GTATTCCGACAGCGACACGCATGATCATATGTTGTGGACGTTCGCAGATCTTGCCATCGA 27355 Query 119581 GCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGAGACCAAAATA 119623 | | |||| || ||| | |||||||| |||||| || Sbjct 27354 GGCGGAGGAGATATGATCGCTCGAGGGTCTTGAAACCAAAGTA 27312 >seq2036 Length=314316 Score = 111 bits (122), Expect = 2e-19 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 |||||||||||| ||||||||||| | || || |||||| ||||| | |||||| || Sbjct 235917 GTGGAGACCCTCATCACGGGAGATCAACTCGTTGGAGAAGGTAAGACCAGCCATGAGGCC 235976 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146 ||||||||||||||||| || | || || ||| ||||||||| ||||| ||| Sbjct 235977 ACGCTTCTTCAACCAGAAGATGGATGCGAAAGAACCACTGAAGAAGATACCCTCAACAGC 236036 Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAAGG 130175 || || |||| ||||| | |||||||| Sbjct 236037 AGCAAAGGCAACAAGACGTTGAGCAAAGG 236065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618415170429960