Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19] 2,591 sequences; 63,226,382 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq2371 291 9e-74 seq2036 123 3e-23 >seq2371 Length=131994 Score = 291 bits (322), Expect = 9e-74 Identities = 1186/1826 (65%), Gaps = 75/1826 (4%) Strand=Plus/Plus Query 104156 TATTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCTTCAACGGCTCGATGGTGTCTTGAT 104214 || |||||| |||| ||||| ||| || | ||||| | || |||||||| | ||| Sbjct 27312 TACTTTGGTTTCAAGACCCTCGAGC-GATCATATCTCCTCCGCCTCGATGG---CAAGAT 27367 Query 104215 G---GAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACAT 104271 ||| ||||| | ||| ||||||| || || |||| || || || || || || Sbjct 27368 CTGCGAACGTCCACAACATATGATCATGCGTGTCGCTGTCGGAATACACGGCGAGGATAT 27427 Query 104272 TGATTCTGTCTTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACA 104329 ||| ||| | | || || ||| || ||||||| |||| || |||| ||||| || Sbjct 27428 TGAGGCTGCCATCGAAACTTACAACTTGATGTCCAGCAAG-TAC-TTCACCCACGCCTCA 27485 Query 104330 CCAACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCC 104389 ||||| || || ||||||||||||| | ||| | || |||||||| |||| | Sbjct 27486 CCAACACTTTTTGCTGCTGGTACACCACAGGCACAACTTTCTTCATGCTTCCTCATCGAC 27545 Query 104390 AACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCA 104449 | ||||||||| || | |||||||| | ||| | | | ||||| || ||| Sbjct 27546 ATGAAGGAGGACAGCATTGATGGTATCTACGACACTTTGAAGATTTGTGCCATGATTTCA 27605 Query 104450 AAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATT 104509 ||| || || ||||| || | | | || | | |||| | || ||| Sbjct 27606 AAGAACGCAGGTGGTATCGGACTCAATGTTCACAGAATCCGCGCCACTGGTGCTTACATT 27665 Query 104510 CGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACA 104569 || ||||| || | || | || || |||| |||||||| || || ||| ||| Sbjct 27666 GCCGGTACAAACGGAAACTCCAACGGAATCGTTCCTATGCTTCGGGTTTTCAACAACACC 27725 Query 104570 GCGCGCTATGTAAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAG 104626 || || ||||| |||||| ||| ||| || || |||| |||| || ||| Sbjct 27726 GCTCGATATGTTGATCAAGGTGGTAACAAGCGACCTGGTGCTTTCGCCATCTACCTCGAG 27785 Query 104627 CCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAG 104686 ||||||||||| ||| | | |||||||| || | || ||||| || | |||||| Sbjct 27786 CCATGGCACGCCGATGTTTTCGAGTTCCTCGACCTCCGAAAGAACCACGGAAAGGAGGAG 27845 Query 104687 GCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTT 104746 | || ||| ||||| |||| ||| ||||||||||||||||||||||||||| | ||| Sbjct 27846 GTTCGTGCCCGTGATCTTTTCTACGCCCTCTGGATTCCAGATCTCTTCATGAAGCGTGTT 27905 Query 104747 GAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCC 104806 || ||| | ||| | | | || || | || |||||| | |||| | | Sbjct 27906 GAAAAGAACCTTGACTGGACATTGATGTGCCCTAATGAGTGTCCTGGTTTGGCCGACGTC 27965 Query 104807 GTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAG---GAAG--AAGGTCGGGCGA 104861 ||||| || || || || | ||| || |||||| || | |||| | || | Sbjct 27966 TACGGTGACGAATTCGAGGCTTTGTACGAGAAATACGAGTCTGAGGGCAAGGGC-CGCAA 28024 Query 104862 CTGCGAC-GGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACT 104920 || | | ||| || | ||| | |||| ||| || |||||||||||||| Sbjct 28025 GAGCATCAAGGCCCAAAAGC-----TTTGGTACTCTATCCTCGAGGCTCAAACCGAGACT 28079 Query 104921 GGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTG 104980 || | || | |||||||||||| || || || |||| |||||| || ||||||||| | Sbjct 28080 GGAAACCCTTTCATGCTTTACAAGGATGCTTGCAACCGAAAGAGCAACCAAAAGAATCTT 28139 Query 104981 GGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAG-ACA-AAGATG 105038 ||| ||| || ||||| | ||||| ||||| | ||| ||| | || |||| Sbjct 28140 GGTACCATCCGAAGCTCCAACTTGTGTACTGAAATTGTCGAA--TACTGTGCACCTGATG 28197 Query 105039 AGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAA 105098 || ||||| || ||| | ||||| | |||||||| | ||||| ||| |||| Sbjct 28198 AGGTTGCTGTTTGCAACTTGGCATCGCTGGCTCTCCCAACATATGTTGATGAGAAGACTG 28257 Query 105099 AGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACA 105158 || | ||| | | || || ||||| || || |||| ||| ||| | |||| Sbjct 28258 CCACTTATGACTTCCAGAAGCTTCACGAGGTCTGCCAAGTTGTCGTCAAGAACTTGAACA 28317 Query 105159 GAGTTATTGATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGAC 105215 |||| |||| || | ||||| || ||| || | || ||| | | | Sbjct 28318 AGATTATCGATATCAACTACTACCCTGTGCCCGAG---GCAAGAAAGAGCAATTTCCGCC 28374 Query 105216 ACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCAT---TCTTTGTCGCC 105272 || | || |||| ||| ||||| || ||||| || |||| ||| | |||| ||| | Sbjct 28375 ACAGACCTATTGCTCTTGGTGTCCAAGGTCTTGCTGATGCTTTCTTGGCTCTTCGTCTTC 28434 Query 105273 ACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATC 105332 |||| || ||| || || ||| | |||| | || || || ||||| || | Sbjct 28435 ---CATTCGAGTCCCCAGAGGCCAAGCACCTCAACATCCAAATCTTCGAAACCATTTACC 28491 Query 105333 ACGCCGCTCTTGAGGCGAGTTCA--GAGTTGGCAGAGGTTGATGGTCCATATGAAACCTT 105390 |||| ||| |||| | | || ||||||||| || || ||||| ||||||| || | Sbjct 28492 ACGCTGCT-TTGA-CTGCTTCCATGGAGTTGGCAAAGATTCATGGTACATATGAGACTTA 28549 Query 105391 TGAGGGTTCTCCAGCTTCACAAGGG-GTGCTTCAATTTGATATGTGGGAAGGTGAGACC- 105448 | || || || || || |||||| | ||| |||| ||| ||||||| || | ||| Sbjct 28550 CCAAGGCTCACCTGCCTC-CAAGGGCGAGCTCCAATATGACATGTGGG-GTGTTACACCT 28607 Query 105449 AAGCTTCACTACGACTGGG-AAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAA 105507 | | || | || |||| |||| | ||| | | || | | ||| | || || Sbjct 28608 ACGGATCTTTGGGATTGGGCTAGCT-TAAAGCAGCAGATTGCTCAACATGGTATCCGCAA 28666 Query 105508 CAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAA-TCTTGGGTAATAATG 105566 |||| | ||| | ||||| |||||||| ||| ||| |||| |||||| | || | Sbjct 28667 CAGTTTGCTCGTCGCTCCTATGCCAACTGCCAGTACCAGTCAAATTCTTGGAT-TCAACG 28725 Query 105567 AATGCTTTGAACCCTACACGACGAACATCTA-TCTGAGAAGAACCCTCGCGGGAGAGTTT 105625 | ||||| || || ||||| | |||||||| ||| || | || || |||||||| Sbjct 28726 AGTGCTTCGAGCCATACACCTCCAACATCTACTCT-CGACGTGTTCTTGCTGGAGAGTTC 28784 Query 105626 GTGATTGTCAA--CA-AGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAG 105682 ||||||| || || |||| |||| || || || || || |||||| | Sbjct 28785 CAAGTTGTCAATCCATGGCTTCTCAAGGAT---CTGGTTGATATGGGACTGTGGTCCGAT 28841 Query 105683 GATATGAAGGA---TCTCA-TGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATAT 105738 | ||||| | | ||| || ||| ||||| ||||||||||| || | || Sbjct 28842 AACATGAAAAACCGTATCATTGCTGA----CGGTGGATCCATTCAAAACGTTCCAAACAT 28897 Query 105739 TCCAAATGAAATTAAGAAGTTGTACCGCACAGTTTGGGAAA--TCAAGATGAAGGATGTC 105796 ||| ||| || ||| | ||| || |||||||||| ||| | | | | || Sbjct 28898 CCCAGCTGATATCAAGGCCCTTTACAAGACTGTTTGGGAAATCTCACAACGTACCA--TC 28955 Query 105797 ATTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTCTTC 105856 || | ||||| || || |||||| |||||||||||| |||| ||||| || | Sbjct 28956 GTTCAGATGGCTGCCGACCGTGGTGCGTTCATTGATCAATCTCAATCAATGAACATCCAC 29015 Query 105857 ATGGAAAGTCCAACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGT 105916 ||| | |||||| ||| ||| | | |||||| | | |||||| |||| Sbjct 29016 ATGAAGGATCCAACCATGGGGAAGATTACCAGTATGCATTTCGCAGGCTGGAAGTTGGGT 29075 Query 105917 CTCAAAACGGGGATGTATTACCTCCG 105942 || || || || ||||| || ||||| Sbjct 29076 CTTAAGACTGGAATGTACTATCTCCG 29101 >seq2036 Length=314316 Score = 123 bits (136), Expect = 3e-23 Identities = 158/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 94733 CAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAA--AGT 94789 ||||||| || ||| | ||||| || ||||||||| | ||| | | |||| ||| Sbjct 236128 CAGTTCCTTGCATTAAGAAGAAGGCTGATTGGGCTGTCCGATGGATCCAAGACAAGGAGT 236069 Query 94790 CGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTG 94849 | | |||||||| | || || | || ||||| ||||||||||||||||||| || Sbjct 236068 C---TACCTTTGCTCAACGTCTTGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTCAGTG 236012 Query 94850 GTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCT 94909 |||| ||| | || | ||| | |||||||| || |||||| | ||||| ||||| Sbjct 236011 GTTCTTTCGCATCCATCTTCTGGTTGAAGAAGCGTGGCCTCATGGCTGGTCTTACCTTCT 235952 Query 94910 CCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 94944 |||||||| | ||||| ||||| ||||| |||||| Sbjct 235951 CCAACGAGTTGATCTCCCGTGATGAGGGTCTCCAC 235917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583241909640840