Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19]
2,591 sequences; 63,226,382 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq2371 291 9e-74
seq2036 123 3e-23
>seq2371
Length=131994
Score = 291 bits (322), Expect = 9e-74
Identities = 1186/1826 (65%), Gaps = 75/1826 (4%)
Strand=Plus/Plus
Query 104156 TATTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCTTCAACGGCTCGATGGTGTCTTGAT 104214
|| |||||| |||| ||||| ||| || | ||||| | || |||||||| | |||
Sbjct 27312 TACTTTGGTTTCAAGACCCTCGAGC-GATCATATCTCCTCCGCCTCGATGG---CAAGAT 27367
Query 104215 G---GAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACAT 104271
||| ||||| | ||| ||||||| || || |||| || || || || || ||
Sbjct 27368 CTGCGAACGTCCACAACATATGATCATGCGTGTCGCTGTCGGAATACACGGCGAGGATAT 27427
Query 104272 TGATTCTGTCTTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACA 104329
||| ||| | | || || ||| || ||||||| |||| || |||| ||||| ||
Sbjct 27428 TGAGGCTGCCATCGAAACTTACAACTTGATGTCCAGCAAG-TAC-TTCACCCACGCCTCA 27485
Query 104330 CCAACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCC 104389
||||| || || ||||||||||||| | ||| | || |||||||| |||| |
Sbjct 27486 CCAACACTTTTTGCTGCTGGTACACCACAGGCACAACTTTCTTCATGCTTCCTCATCGAC 27545
Query 104390 AACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCA 104449
| ||||||||| || | |||||||| | ||| | | | ||||| || |||
Sbjct 27546 ATGAAGGAGGACAGCATTGATGGTATCTACGACACTTTGAAGATTTGTGCCATGATTTCA 27605
Query 104450 AAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATT 104509
||| || || ||||| || | | | || | | |||| | || |||
Sbjct 27606 AAGAACGCAGGTGGTATCGGACTCAATGTTCACAGAATCCGCGCCACTGGTGCTTACATT 27665
Query 104510 CGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACA 104569
|| ||||| || | || | || || |||| |||||||| || || ||| |||
Sbjct 27666 GCCGGTACAAACGGAAACTCCAACGGAATCGTTCCTATGCTTCGGGTTTTCAACAACACC 27725
Query 104570 GCGCGCTATGTAAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAG 104626
|| || ||||| |||||| ||| ||| || || |||| |||| || |||
Sbjct 27726 GCTCGATATGTTGATCAAGGTGGTAACAAGCGACCTGGTGCTTTCGCCATCTACCTCGAG 27785
Query 104627 CCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAG 104686
||||||||||| ||| | | |||||||| || | || ||||| || | ||||||
Sbjct 27786 CCATGGCACGCCGATGTTTTCGAGTTCCTCGACCTCCGAAAGAACCACGGAAAGGAGGAG 27845
Query 104687 GCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTT 104746
| || ||| ||||| |||| ||| ||||||||||||||||||||||||||| | |||
Sbjct 27846 GTTCGTGCCCGTGATCTTTTCTACGCCCTCTGGATTCCAGATCTCTTCATGAAGCGTGTT 27905
Query 104747 GAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCC 104806
|| ||| | ||| | | | || || | || |||||| | |||| | |
Sbjct 27906 GAAAAGAACCTTGACTGGACATTGATGTGCCCTAATGAGTGTCCTGGTTTGGCCGACGTC 27965
Query 104807 GTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAG---GAAG--AAGGTCGGGCGA 104861
||||| || || || || | ||| || |||||| || | |||| | || |
Sbjct 27966 TACGGTGACGAATTCGAGGCTTTGTACGAGAAATACGAGTCTGAGGGCAAGGGC-CGCAA 28024
Query 104862 CTGCGAC-GGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACT 104920
|| | | ||| || | ||| | |||| ||| || ||||||||||||||
Sbjct 28025 GAGCATCAAGGCCCAAAAGC-----TTTGGTACTCTATCCTCGAGGCTCAAACCGAGACT 28079
Query 104921 GGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTG 104980
|| | || | |||||||||||| || || || |||| |||||| || ||||||||| |
Sbjct 28080 GGAAACCCTTTCATGCTTTACAAGGATGCTTGCAACCGAAAGAGCAACCAAAAGAATCTT 28139
Query 104981 GGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAG-ACA-AAGATG 105038
||| ||| || ||||| | ||||| ||||| | ||| ||| | || ||||
Sbjct 28140 GGTACCATCCGAAGCTCCAACTTGTGTACTGAAATTGTCGAA--TACTGTGCACCTGATG 28197
Query 105039 AGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAA 105098
|| ||||| || ||| | ||||| | |||||||| | ||||| ||| ||||
Sbjct 28198 AGGTTGCTGTTTGCAACTTGGCATCGCTGGCTCTCCCAACATATGTTGATGAGAAGACTG 28257
Query 105099 AGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACA 105158
|| | ||| | | || || ||||| || || |||| ||| ||| | ||||
Sbjct 28258 CCACTTATGACTTCCAGAAGCTTCACGAGGTCTGCCAAGTTGTCGTCAAGAACTTGAACA 28317
Query 105159 GAGTTATTGATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGAC 105215
|||| |||| || | ||||| || ||| || | || ||| | | |
Sbjct 28318 AGATTATCGATATCAACTACTACCCTGTGCCCGAG---GCAAGAAAGAGCAATTTCCGCC 28374
Query 105216 ACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCAT---TCTTTGTCGCC 105272
|| | || |||| ||| ||||| || ||||| || |||| ||| | |||| ||| |
Sbjct 28375 ACAGACCTATTGCTCTTGGTGTCCAAGGTCTTGCTGATGCTTTCTTGGCTCTTCGTCTTC 28434
Query 105273 ACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATC 105332
|||| || ||| || || ||| | |||| | || || || ||||| || |
Sbjct 28435 ---CATTCGAGTCCCCAGAGGCCAAGCACCTCAACATCCAAATCTTCGAAACCATTTACC 28491
Query 105333 ACGCCGCTCTTGAGGCGAGTTCA--GAGTTGGCAGAGGTTGATGGTCCATATGAAACCTT 105390
|||| ||| |||| | | || ||||||||| || || ||||| ||||||| || |
Sbjct 28492 ACGCTGCT-TTGA-CTGCTTCCATGGAGTTGGCAAAGATTCATGGTACATATGAGACTTA 28549
Query 105391 TGAGGGTTCTCCAGCTTCACAAGGG-GTGCTTCAATTTGATATGTGGGAAGGTGAGACC- 105448
| || || || || || |||||| | ||| |||| ||| ||||||| || | |||
Sbjct 28550 CCAAGGCTCACCTGCCTC-CAAGGGCGAGCTCCAATATGACATGTGGG-GTGTTACACCT 28607
Query 105449 AAGCTTCACTACGACTGGG-AAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAA 105507
| | || | || |||| |||| | ||| | | || | | ||| | || ||
Sbjct 28608 ACGGATCTTTGGGATTGGGCTAGCT-TAAAGCAGCAGATTGCTCAACATGGTATCCGCAA 28666
Query 105508 CAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAA-TCTTGGGTAATAATG 105566
|||| | ||| | ||||| |||||||| ||| ||| |||| |||||| | || |
Sbjct 28667 CAGTTTGCTCGTCGCTCCTATGCCAACTGCCAGTACCAGTCAAATTCTTGGAT-TCAACG 28725
Query 105567 AATGCTTTGAACCCTACACGACGAACATCTA-TCTGAGAAGAACCCTCGCGGGAGAGTTT 105625
| ||||| || || ||||| | |||||||| ||| || | || || ||||||||
Sbjct 28726 AGTGCTTCGAGCCATACACCTCCAACATCTACTCT-CGACGTGTTCTTGCTGGAGAGTTC 28784
Query 105626 GTGATTGTCAA--CA-AGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAG 105682
||||||| || || |||| |||| || || || || || |||||| |
Sbjct 28785 CAAGTTGTCAATCCATGGCTTCTCAAGGAT---CTGGTTGATATGGGACTGTGGTCCGAT 28841
Query 105683 GATATGAAGGA---TCTCA-TGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATAT 105738
| ||||| | | ||| || ||| ||||| ||||||||||| || | ||
Sbjct 28842 AACATGAAAAACCGTATCATTGCTGA----CGGTGGATCCATTCAAAACGTTCCAAACAT 28897
Query 105739 TCCAAATGAAATTAAGAAGTTGTACCGCACAGTTTGGGAAA--TCAAGATGAAGGATGTC 105796
||| ||| || ||| | ||| || |||||||||| ||| | | | | ||
Sbjct 28898 CCCAGCTGATATCAAGGCCCTTTACAAGACTGTTTGGGAAATCTCACAACGTACCA--TC 28955
Query 105797 ATTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTCTTC 105856
|| | ||||| || || |||||| |||||||||||| |||| ||||| || |
Sbjct 28956 GTTCAGATGGCTGCCGACCGTGGTGCGTTCATTGATCAATCTCAATCAATGAACATCCAC 29015
Query 105857 ATGGAAAGTCCAACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGT 105916
||| | |||||| ||| ||| | | |||||| | | |||||| ||||
Sbjct 29016 ATGAAGGATCCAACCATGGGGAAGATTACCAGTATGCATTTCGCAGGCTGGAAGTTGGGT 29075
Query 105917 CTCAAAACGGGGATGTATTACCTCCG 105942
|| || || || ||||| || |||||
Sbjct 29076 CTTAAGACTGGAATGTACTATCTCCG 29101
>seq2036
Length=314316
Score = 123 bits (136), Expect = 3e-23
Identities = 158/215 (73%), Gaps = 6/215 (3%)
Strand=Plus/Minus
Query 94733 CAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAA--AGT 94789
||||||| || ||| | ||||| || ||||||||| | ||| | | |||| |||
Sbjct 236128 CAGTTCCTTGCATTAAGAAGAAGGCTGATTGGGCTGTCCGATGGATCCAAGACAAGGAGT 236069
Query 94790 CGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTG 94849
| | |||||||| | || || | || ||||| ||||||||||||||||||| ||
Sbjct 236068 C---TACCTTTGCTCAACGTCTTGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTCAGTG 236012
Query 94850 GTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCT 94909
|||| ||| | || | ||| | |||||||| || |||||| | ||||| |||||
Sbjct 236011 GTTCTTTCGCATCCATCTTCTGGTTGAAGAAGCGTGGCCTCATGGCTGGTCTTACCTTCT 235952
Query 94910 CCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 94944
|||||||| | ||||| ||||| ||||| ||||||
Sbjct 235951 CCAACGAGTTGATCTCCCGTGATGAGGGTCTCCAC 235917
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583241909640840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |