Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19] 2,591 sequences; 63,226,382 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq634 123 8e-23 seq2459 118 3e-21 seq778 114 4e-20 seq623 109 2e-18 seq1113 98.7 3e-15 >seq634 Length=94567 Score = 123 bits (136), Expect = 8e-23 Identities = 185/263 (70%), Gaps = 0/263 (0%) Strand=Plus/Minus Query 378184 TCATATCTAACCATTAAATCTTCTAATGCTTTAATAAGTCGTCGAGAAATATAACCAGTT 378243 |||||| | | || | |||||| | ||| || | ||| || || |||||||||||| Sbjct 30686 TCATATTTGGCAATGACATCTTCGAGTGCCTTGACAAGACGACGTTGGATATAACCAGTT 30627 Query 378244 TGACTAGTTTTAACTGCAGTATCAATTAAACCAACACGACCACCCATTGCATGGAAGAAT 378303 | | ||| || || ||||||||||| | ||| ||||||| |||| || |||||||| Sbjct 30626 TCAGCAGTCTTTACAGCAGTATCAATGAGACCTTCACGACCGGCCATGGCGTGGAAGAAA 30567 Query 378304 AATTCAGTAGGAGTAAGTCCACCAATAAATGAACTCTCAATAAATCCTCTTGCGCCTGGC 378363 || || || || || | || | | | | || |||| | || ||||||| |||| Sbjct 30566 AACTCGGTTGGTGTTAACCCTCTGAGATACGAGTTCTCGACGAAACCTCTTGACTCTGGG 30507 Query 378364 GAATCATCATATTTTGTATAATGAGGTAATGTACGATTCTCAAACCCATATGGAATTCGT 378423 |||| ||||| ||||| ||||||| | ||| |||| | ||||| | ||||| || Sbjct 30506 GAATAATCATCCTTTGTGAAATGAGGAAGTGTTCGATATTTGAACCCGAAAGGAATACGC 30447 Query 378424 TTTCCATCAACATTCTGTTGACC 378446 ||||| || ||| || ||||| Sbjct 30446 TTTCCTTCGACAGATTGCTGACC 30424 Score = 113 bits (124), Expect = 1e-19 Identities = 104/131 (79%), Gaps = 3/131 (2%) Strand=Plus/Minus Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517 || ||||||||| | || |||||| || || | ||||| ||||| ||||||||||| Sbjct 31433 CGAGGCACACCAAGGGTGACATTC---TTGGAAGATACACCGGCAAAATGGAAAGTATTG 31377 Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577 || || | ||| |||| ||| || ||||| ||||| || |||| || |||||||||||| Sbjct 31376 AGCGTCATTTGTGTAGCGGGTTCTCCAATCGACTGAGCAGCAAGCACTCCAACCATTTCT 31317 Query 377578 CCAGGATTGAC 377588 ||||||||||| Sbjct 31316 CCAGGATTGAC 31306 >seq2459 Length=125150 Score = 118 bits (130), Expect = 3e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570 || ||||||| | || || |||||||| || ||||| || || || || || || || Sbjct 17179 CCTCCACGTAGACGTAAGACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 17238 Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630 | || || ||||| |||||||| |||||||||||||| | ||| || || || || ||| Sbjct 17239 AGGGTACGACCATCCTCAAGTTGCTTTCCAGCAAAGATCAAACGCTGTTGGTCCGGTGGA 17298 Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACT 140690 ||||| || || ||||| || || | || ||||| || || | || || | ||||| Sbjct 17299 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCCGAGGACTCAACC 17358 Query 140691 TCAAGTGTAACTGTCTTTCCGGT 140713 ||||| || | ||||| || || Sbjct 17359 TCAAGGGTGATGGTCTTGCCCGT 17381 >seq778 Length=242110 Score = 114 bits (126), Expect = 4e-20 Identities = 152/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | || ||||| | || ||||| || || || || ||||| | Sbjct 99343 TTTGCATACCACCACGGAGTCGGAGAACCAAGTGCAGAGTGGATTCCTTCTGGATATTGT 99284 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 |||| || | ||| || || || ||||| || || ||||||||||| || || || || | Sbjct 99283 AATCGGAAAGTGTGCGACCGTCCTCAAGCTGCTTGCCAGCAAAGATAAGGCGCTGTTGGT 99224 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || || || || || || |||||||| || | ||| || || || || | ||| || | Sbjct 99223 CTGGTGGGATACCCTCCTTGTCCTGAATCTTCGATTTGACGTTGTCGATGGTATCGGAAG 99164 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGT 140713 || || || || || | ||||| || || Sbjct 99163 ACTCCACCTCGAGGGTGATGGTCTTACCAGT 99133 Score = 114 bits (126), Expect = 4e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||||||||| || | | || || | ||||||||| ||| ||||| || ||||| || Sbjct 99567 CATACCACCGCGGAGACGAAGGACCAAGTGAAGAGTACTCTCCTTTTGGATGTTATAGTC 99508 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | ||||| ||||| |||||||| || || || || || || || || || || || Sbjct 99507 GCTGAGGGTTCGGCCATCCTCAAGTTGCTTGCCGGCGAAAATGAGGCGCTGTTGGTCGGG 99448 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || ||||||||||| |||| || ||||| || || | || || | ||| Sbjct 99447 TGGGATACCCTCCTTATCCTGAATCTTAGACTTCACATTGTCGATTGTGTCTGAAGATTC 99388 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || | || | ||||||||||| || || || || || || ||||| Sbjct 99387 GACCTCCAAAGTGATGGTCTTTCCGGTAAGAGTCTTGACGAAGATTTGCAT 99337 Score = 104 bits (114), Expect = 7e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 140546 CTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAA 140605 ||| |||||||| || ||||| | || || ||||| || | || || || || || Sbjct 99756 CTCCTTTTGAATGTTGTAATCGCTGAGGGTACGACCATCCTCCAACTGCTTGCCTGCGAA 99697 Query 140606 GATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATT 140665 ||| | || || ||||| || ||||| || || |||||||| || || | || ||||| Sbjct 99696 GATCAATCGCTGTTGATCTGGTGGAATACCCTCCTTATCCTGGATCTTTGACTTGACATT 99637 Query 140666 ATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 |||||||| || || | |||||||| | ||| | ||||| || || | || || || Sbjct 99636 ATCAATCGTGTCCGAAGACTCAACTTCTAATGTGATAGTCTTGCCAGTCAAAGTCTTAAC 99577 Query 140726 AAAAATCTGCAT 140737 ||| |||||||| Sbjct 99576 AAAGATCTGCAT 99565 >seq623 Length=95226 Score = 109 bits (120), Expect = 2e-18 Identities = 476/737 (65%), Gaps = 21/737 (3%) Strand=Plus/Plus Query 349610 GCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCT 349669 || || || ||||| |||||||| || || || ||| ||| || || || ||||| Sbjct 32057 GCAGTCATCACTGTCCCAGCCTACTTCAACGACAACCAACGTCAAGCCACCAAGGATGCG 32116 Query 349670 GGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATT 349729 || |||||| || | || ||||| |||| || || || |||||||| || || || Sbjct 32117 GGTGCCATTGCCGGTCTTAACGTTCTCCGAATCATCAACGAGCCCACTGCCGCTGCTATC 32176 Query 349730 GCATATGGGCTTGATAA---AATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTA 349786 ||||| || || | | || | || | || |||| || | |||| ||| | Sbjct 32177 GCATACGGTCTCGGTGCCGGAAAGTCCAACAAGGAGCGAAATGTTTTGATTTACGATCTC 32236 Query 349787 GGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAA-GTTAA 349845 ||||| || ||||| ||||| || || || | || | || | | |||| | || || Sbjct 32237 GGTGGAGGAACTTTCGATGTTTCTCTCCTTA-ACATCCAGGGTGGTGTTTTCACCGTCAA 32295 Query 349846 AGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCG-TTTCGC 349904 || |||||||||||||| ||| | || || ||||||||||| | | || | || | Sbjct 32296 GGCCACTGCTGGTGATACCCATTTGGGAGGTCAAGATTTTGAT-ACCAACTTGCTTGACC 32354 Query 349905 ATTTTGTTAAAGAATTTAAGCGTCAAGCTAAAATTGATATTGGAGATAATCCTAGAGCAA 349964 | || || || || | | | | || | ||| | | | || | | || Sbjct 32355 ACTTCAAGAAGGAGTTCACAAGAAAGACCAAGAAGGATTTGTCCGGTGATGCCCGTGCTC 32414 Query 349965 TGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTAC--TACCCA 350022 | | || || | ||||| || || ||||| ||| | | | || | || | |||| Sbjct 32415 TTAGACGTCTTCGTACTGCTTGCGAGCGTGCCAAGAGAAC--TCTCTCCAACGGTGCCCA 32472 Query 350023 AACCTCTATTGAAATTGATTCTCTTGCT-GATGGCAAAGATTTCTTTTCATCTATTACAC 350081 |||| || |||| |||||||| |||| | ||||| | || ||| | || || | Sbjct 32473 AACCACTGTTGAGATTGATTC-CTTGTTCGATGGAGAGGACTTCAACGCTCAAATCACCC 32531 Query 350082 GTGCTCGGTTTGAAGAATT--ATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGA 350139 ||||||| || || || || | | | | || | | || |||| || || | Sbjct 32532 GTGCTCGTTTCGAGGACTTGAACTCAAAGGCC--TTCAATGGTACTTTGGACCCAGTCGC 32589 Query 350140 AAAAGTATTAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGG 350199 | ||||| || ||||| || || || | || |||| ||| | || | ||||| Sbjct 32590 CCAGGTATTGAAGGATGCCAACATCGATAAGAGCAAGGTTGACGAAATTGTGCTTGTTGG 32649 Query 350200 TGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGA 350259 ||| || || ||||||||| | ||| || | || || || ||| ||||| |||| Sbjct 32650 TGGATCCACCCGTATTCCACGGATACAAAAGCTCCTCAGCGATTTCTTTGATGGC-AAGA 32708 Query 350260 ACCTTCTAGATCA--ATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCA 350317 | | || ||| | || || || ||||| ||||||||||| ||||| ||||| || || Sbjct 32709 AGC-TCGAGAAGAGCATCAACCCTGATGAGGCTGTTGCATACGGTGCCGCTGTCCAAGCT 32767 Query 350318 TCTATTTTATCTGGAAA 350334 |||||| || ||||| Sbjct 32768 GGTATTTTGTCAGGAAA 32784 >seq1113 Length=83002 Score = 98.7 bits (108), Expect = 3e-15 Identities = 129/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 140550 TTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATT 140609 ||||| || |||||||| || | || || |||||||||||||| |||||||| ||||| Sbjct 57007 TTTTGGATGTTATAATCTGACAGAGTGCGTCCATCTTCAAGTTGCTTTCCAGCGAAGATC 57066 Query 140610 AGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCA 140669 | ||| || || || || |||||||| || || ||||| || || | || ||||| || Sbjct 57067 AAACGCTGTTGGTCCGGTGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 57126 Query 140670 ATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAA 140728 || | || | ||| || || || || | ||||| || || || || || || || Sbjct 57127 ATAGTGTCGCTAGATTCGACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTGACGAA 57185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515204097815573