Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19]
2,591 sequences; 63,226,382 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq634 123 8e-23
seq2459 118 3e-21
seq778 114 4e-20
seq623 109 2e-18
seq1113 98.7 3e-15
>seq634
Length=94567
Score = 123 bits (136), Expect = 8e-23
Identities = 185/263 (70%), Gaps = 0/263 (0%)
Strand=Plus/Minus
Query 378184 TCATATCTAACCATTAAATCTTCTAATGCTTTAATAAGTCGTCGAGAAATATAACCAGTT 378243
|||||| | | || | |||||| | ||| || | ||| || || ||||||||||||
Sbjct 30686 TCATATTTGGCAATGACATCTTCGAGTGCCTTGACAAGACGACGTTGGATATAACCAGTT 30627
Query 378244 TGACTAGTTTTAACTGCAGTATCAATTAAACCAACACGACCACCCATTGCATGGAAGAAT 378303
| | ||| || || ||||||||||| | ||| ||||||| |||| || ||||||||
Sbjct 30626 TCAGCAGTCTTTACAGCAGTATCAATGAGACCTTCACGACCGGCCATGGCGTGGAAGAAA 30567
Query 378304 AATTCAGTAGGAGTAAGTCCACCAATAAATGAACTCTCAATAAATCCTCTTGCGCCTGGC 378363
|| || || || || | || | | | | || |||| | || ||||||| ||||
Sbjct 30566 AACTCGGTTGGTGTTAACCCTCTGAGATACGAGTTCTCGACGAAACCTCTTGACTCTGGG 30507
Query 378364 GAATCATCATATTTTGTATAATGAGGTAATGTACGATTCTCAAACCCATATGGAATTCGT 378423
|||| ||||| ||||| ||||||| | ||| |||| | ||||| | ||||| ||
Sbjct 30506 GAATAATCATCCTTTGTGAAATGAGGAAGTGTTCGATATTTGAACCCGAAAGGAATACGC 30447
Query 378424 TTTCCATCAACATTCTGTTGACC 378446
||||| || ||| || |||||
Sbjct 30446 TTTCCTTCGACAGATTGCTGACC 30424
Score = 113 bits (124), Expect = 1e-19
Identities = 104/131 (79%), Gaps = 3/131 (2%)
Strand=Plus/Minus
Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517
|| ||||||||| | || |||||| || || | ||||| ||||| |||||||||||
Sbjct 31433 CGAGGCACACCAAGGGTGACATTC---TTGGAAGATACACCGGCAAAATGGAAAGTATTG 31377
Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577
|| || | ||| |||| ||| || ||||| ||||| || |||| || ||||||||||||
Sbjct 31376 AGCGTCATTTGTGTAGCGGGTTCTCCAATCGACTGAGCAGCAAGCACTCCAACCATTTCT 31317
Query 377578 CCAGGATTGAC 377588
|||||||||||
Sbjct 31316 CCAGGATTGAC 31306
>seq2459
Length=125150
Score = 118 bits (130), Expect = 3e-21
Identities = 148/203 (73%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570
|| ||||||| | || || |||||||| || ||||| || || || || || || ||
Sbjct 17179 CCTCCACGTAGACGTAAGACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 17238
Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630
| || || ||||| |||||||| |||||||||||||| | ||| || || || || |||
Sbjct 17239 AGGGTACGACCATCCTCAAGTTGCTTTCCAGCAAAGATCAAACGCTGTTGGTCCGGTGGA 17298
Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACT 140690
||||| || || ||||| || || | || ||||| || || | || || | |||||
Sbjct 17299 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCCGAGGACTCAACC 17358
Query 140691 TCAAGTGTAACTGTCTTTCCGGT 140713
||||| || | ||||| || ||
Sbjct 17359 TCAAGGGTGATGGTCTTGCCCGT 17381
>seq778
Length=242110
Score = 114 bits (126), Expect = 4e-20
Identities = 152/211 (72%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||| |||||||||||| | || ||||| | || ||||| || || || || ||||| |
Sbjct 99343 TTTGCATACCACCACGGAGTCGGAGAACCAAGTGCAGAGTGGATTCCTTCTGGATATTGT 99284
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
|||| || | ||| || || || ||||| || || ||||||||||| || || || || |
Sbjct 99283 AATCGGAAAGTGTGCGACCGTCCTCAAGCTGCTTGCCAGCAAAGATAAGGCGCTGTTGGT 99224
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682
| || || || || || || |||||||| || | ||| || || || || | ||| || |
Sbjct 99223 CTGGTGGGATACCCTCCTTGTCCTGAATCTTCGATTTGACGTTGTCGATGGTATCGGAAG 99164
Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGT 140713
|| || || || || | ||||| || ||
Sbjct 99163 ACTCCACCTCGAGGGTGATGGTCTTACCAGT 99133
Score = 114 bits (126), Expect = 4e-20
Identities = 164/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
||||||||| || | | || || | ||||||||| ||| ||||| || ||||| ||
Sbjct 99567 CATACCACCGCGGAGACGAAGGACCAAGTGAAGAGTACTCTCCTTTTGGATGTTATAGTC 99508
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
| ||||| ||||| |||||||| || || || || || || || || || || ||
Sbjct 99507 GCTGAGGGTTCGGCCATCCTCAAGTTGCTTGCCGGCGAAAATGAGGCGCTGTTGGTCGGG 99448
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
|| || || || ||||||||||| |||| || ||||| || || | || || | |||
Sbjct 99447 TGGGATACCCTCCTTATCCTGAATCTTAGACTTCACATTGTCGATTGTGTCTGAAGATTC 99388
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| || | || | ||||||||||| || || || || || || |||||
Sbjct 99387 GACCTCCAAAGTGATGGTCTTTCCGGTAAGAGTCTTGACGAAGATTTGCAT 99337
Score = 104 bits (114), Expect = 7e-17
Identities = 138/192 (72%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 140546 CTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAA 140605
||| |||||||| || ||||| | || || ||||| || | || || || || ||
Sbjct 99756 CTCCTTTTGAATGTTGTAATCGCTGAGGGTACGACCATCCTCCAACTGCTTGCCTGCGAA 99697
Query 140606 GATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATT 140665
||| | || || ||||| || ||||| || || |||||||| || || | || |||||
Sbjct 99696 GATCAATCGCTGTTGATCTGGTGGAATACCCTCCTTATCCTGGATCTTTGACTTGACATT 99637
Query 140666 ATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725
|||||||| || || | |||||||| | ||| | ||||| || || | || || ||
Sbjct 99636 ATCAATCGTGTCCGAAGACTCAACTTCTAATGTGATAGTCTTGCCAGTCAAAGTCTTAAC 99577
Query 140726 AAAAATCTGCAT 140737
||| ||||||||
Sbjct 99576 AAAGATCTGCAT 99565
>seq623
Length=95226
Score = 109 bits (120), Expect = 2e-18
Identities = 476/737 (65%), Gaps = 21/737 (3%)
Strand=Plus/Plus
Query 349610 GCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCT 349669
|| || || ||||| |||||||| || || || ||| ||| || || || |||||
Sbjct 32057 GCAGTCATCACTGTCCCAGCCTACTTCAACGACAACCAACGTCAAGCCACCAAGGATGCG 32116
Query 349670 GGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATT 349729
|| |||||| || | || ||||| |||| || || || |||||||| || || ||
Sbjct 32117 GGTGCCATTGCCGGTCTTAACGTTCTCCGAATCATCAACGAGCCCACTGCCGCTGCTATC 32176
Query 349730 GCATATGGGCTTGATAA---AATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTA 349786
||||| || || | | || | || | || |||| || | |||| ||| |
Sbjct 32177 GCATACGGTCTCGGTGCCGGAAAGTCCAACAAGGAGCGAAATGTTTTGATTTACGATCTC 32236
Query 349787 GGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAA-GTTAA 349845
||||| || ||||| ||||| || || || | || | || | | |||| | || ||
Sbjct 32237 GGTGGAGGAACTTTCGATGTTTCTCTCCTTA-ACATCCAGGGTGGTGTTTTCACCGTCAA 32295
Query 349846 AGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCG-TTTCGC 349904
|| |||||||||||||| ||| | || || ||||||||||| | | || | || |
Sbjct 32296 GGCCACTGCTGGTGATACCCATTTGGGAGGTCAAGATTTTGAT-ACCAACTTGCTTGACC 32354
Query 349905 ATTTTGTTAAAGAATTTAAGCGTCAAGCTAAAATTGATATTGGAGATAATCCTAGAGCAA 349964
| || || || || | | | | || | ||| | | | || | | ||
Sbjct 32355 ACTTCAAGAAGGAGTTCACAAGAAAGACCAAGAAGGATTTGTCCGGTGATGCCCGTGCTC 32414
Query 349965 TGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTAC--TACCCA 350022
| | || || | ||||| || || ||||| ||| | | | || | || | ||||
Sbjct 32415 TTAGACGTCTTCGTACTGCTTGCGAGCGTGCCAAGAGAAC--TCTCTCCAACGGTGCCCA 32472
Query 350023 AACCTCTATTGAAATTGATTCTCTTGCT-GATGGCAAAGATTTCTTTTCATCTATTACAC 350081
|||| || |||| |||||||| |||| | ||||| | || ||| | || || |
Sbjct 32473 AACCACTGTTGAGATTGATTC-CTTGTTCGATGGAGAGGACTTCAACGCTCAAATCACCC 32531
Query 350082 GTGCTCGGTTTGAAGAATT--ATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGA 350139
||||||| || || || || | | | | || | | || |||| || || |
Sbjct 32532 GTGCTCGTTTCGAGGACTTGAACTCAAAGGCC--TTCAATGGTACTTTGGACCCAGTCGC 32589
Query 350140 AAAAGTATTAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGG 350199
| ||||| || ||||| || || || | || |||| ||| | || | |||||
Sbjct 32590 CCAGGTATTGAAGGATGCCAACATCGATAAGAGCAAGGTTGACGAAATTGTGCTTGTTGG 32649
Query 350200 TGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGA 350259
||| || || ||||||||| | ||| || | || || || ||| ||||| ||||
Sbjct 32650 TGGATCCACCCGTATTCCACGGATACAAAAGCTCCTCAGCGATTTCTTTGATGGC-AAGA 32708
Query 350260 ACCTTCTAGATCA--ATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCA 350317
| | || ||| | || || || ||||| ||||||||||| ||||| ||||| || ||
Sbjct 32709 AGC-TCGAGAAGAGCATCAACCCTGATGAGGCTGTTGCATACGGTGCCGCTGTCCAAGCT 32767
Query 350318 TCTATTTTATCTGGAAA 350334
|||||| || |||||
Sbjct 32768 GGTATTTTGTCAGGAAA 32784
>seq1113
Length=83002
Score = 98.7 bits (108), Expect = 3e-15
Identities = 129/179 (72%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 140550 TTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATT 140609
||||| || |||||||| || | || || |||||||||||||| |||||||| |||||
Sbjct 57007 TTTTGGATGTTATAATCTGACAGAGTGCGTCCATCTTCAAGTTGCTTTCCAGCGAAGATC 57066
Query 140610 AGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCA 140669
| ||| || || || || |||||||| || || ||||| || || | || ||||| ||
Sbjct 57067 AAACGCTGTTGGTCCGGTGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 57126
Query 140670 ATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAA 140728
|| | || | ||| || || || || | ||||| || || || || || || ||
Sbjct 57127 ATAGTGTCGCTAGATTCGACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTGACGAA 57185
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515204097815573
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