Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19] 2,591 sequences; 63,226,382 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq2371 208 8e-49 seq2036 123 3e-23 >seq2371 Length=131994 Score = 208 bits (230), Expect = 8e-49 Identities = 888/1383 (64%), Gaps = 44/1383 (3%) Strand=Plus/Minus Query 78534 GTAGATGTTGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGA 78593 ||||||||||| ||||| |||||||| ||||||| || | || || ||| Sbjct 28757 GTAGATGTTGGAGGTGTATGGCTCGAAGCACTCGTTGAATCCAAGAATTTGACTGGTACT 28698 Query 78594 GGCGGTCGGCATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTGATC--TCG 78651 ||| || ||||| || ||||| || | | || || | |||||| |||| | || Sbjct 28697 GGCAGTTGGCATAGGAGCGACGAGCAAACTGTTGCGGATACCATG----TTGAGCAATCT 28642 Query 78652 AC--CTTTAGGCCG------TCCCAAAATTCATTCGCCGCGATCCCCCACATGTCCGGTT 78703 | ||||| || ||||||| || | | | | ||||||||||| || Sbjct 28641 GCTGCTTTAAGCTAGCCCAATCCCAAAGATCCGTAGGTGTAACACCCCACATGTCATATT 28582 Query 78704 GAAGGATACCCTCGGACGCCGGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTGG 78763 | || |||| ||| || || || || | | | ||||| || | || | ||| | Sbjct 28581 GGAGCTCGCCCTTGGAGGCAGGTGAGCCTTGGTAAGTCTCATATGTACCATGAATCTTTG 28522 Query 78764 CGAGTTCGCATGACTCGAG-CAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTG 78822 | | || |||| || || || |||||||| | | |||||||| ||||| Sbjct 28521 CCAACTC-CATGGAAGCAGTCAAAGCAGCGTGGTAAATGGTTTCGAAGATTTGGATGTTG 28463 Query 78823 AGCTCGCGCGCCT-TGGTCTCGTCGAACGAAAGGCCGAGCATCATGAAGACATCGGCCAG 78881 || | |||| ||| | ||||| | ||| | || || ||| |||| || || Sbjct 28462 AGGTGCTTGGCCTCTGGGGAC-TCGAATGGAAGACGAAGAGCCAAGAAAGCATCAGCAAG 28404 Query 78882 GCCCTGGACGCCGATAGCGATCGGTCGGTGGCGCATGTTGCTCTTTCGGGCCGCCTCGGT 78941 || ||||| || | ||| || |||| |||||| | |||||||||| ||| |||| Sbjct 28403 ACCTTGGACACCAAGAGCAATAGGTCTGTGGCGGAAATTGCTCTTTCTTGCC---TCGGG 28347 Query 78942 C---GGGTAAAAGTTCCGATCGATGACGCGGTTCAGGTTACGCGTGACGACC-CGAGTCA 78997 | ||||| |||| |||||| | ||||| ||| | ||||||| | | || Sbjct 28346 CACAGGGTAGTAGTTGATATCGATAATCTTGTTCAAGTT---CTTGACGACAACTTGGCA 28290 Query 78998 --CCTCGTACAATTTGGCGAAATCAAAAT--GATTTCCTTTGATGAAAGTCGGTAGGCA- 79052 |||||| | || ||| ||| || | || | | || || | || || | Sbjct 28289 GACCTCGTGAAGCTTCTGGAAGTCATAAGTGGCAGTCTTCTCATCAACATATGTTGGGAG 28230 Query 79053 ---CAGCGATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTC 79109 ||||||||||| |||||| || || ||| || || | | |||| ||||| Sbjct 28229 AGCCAGCGATGCCAAGTTGCAAACAGCAACCTCATCAGGTGCACAGTATTCGACAATTTC 28170 Query 79110 TGTGCACAAATTAGACGACTT--GATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTA 79167 || ||||| || || ||| |||||| || | ||||| ||||||||||| ||| Sbjct 28169 AGTACACAAGTTGGAG--CTTCGGATGGTACCAAGATTCTTTTGGTTGCTCTTTCGGTTG 28112 Query 79168 CAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCG 79227 || || |||||||| |||| | || | || ||||| ||| || ||| | | Sbjct 28111 CAAGCATCCTTGTAAAGCATGAAAGGGTTTCCAGTCTCGGTTTGAGCCTCGAGGATAGAG 28052 Query 79228 TCCCAGATGTCCCGGGCCCGGACAACCTTCTTGTACCGACCCTGTGCGACGTACGTCCGG 79287 | ||| | | ||||| || ||| | | |||| | |||| || | Sbjct 28051 TACCAAAGCTTTTGGGCCTTGATGCTCTTGCGGCCCTTGCCCTCAGACTCGTATTTCTCG 27992 Query 79288 TACAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCAC 79347 ||||| | | ||| | || || ||||| |||| || || || ||||| | |||||| Sbjct 27991 TACAAAGCCTCGAATTCGTCACCGTAGACGTCGGCCAAACCAGGACACTCATTAGGGCAC 27932 Query 79348 ATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGG 79407 |||| |||||| || ||| ||||| || ||||||||| || || ||||| ||| Sbjct 27931 ATCAATGTCCAGTCAAGGTTCTTTTCAACACGCTTCATGAAGAGATCTGGAATCCAGAGG 27872 Query 79408 GCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGA 79467 || ||| || || ||| ||| | |||||| | || |||||| || || ||||| Sbjct 27871 GCGTAGAAAAGATCACGGGCACGAACCTCCTCCTTTCCGTGGTTCTTTCGGAGGTCGAGG 27812 Query 79468 AAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTG 79527 || || | | ||||||||||| ||||| || ||||||||||| | ||| |||||| Sbjct 27811 AACTCGAAAACATCGGCGTGCCATGGCTCGAGGTAGATGGCGAAAGCACCAGGTCGCTTG 27752 Query 79528 CCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATG 79587 || || || | || || || || |||||||||||||| || ||||| || ||||| Sbjct 27751 TTACCACCTTGATCAACATATCGAGCGGTGTTGTTGAAAACCCGAAGCATAGGAACGATT 27692 Query 79588 CCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGC-CCGAATGTTCGAGCA 79646 |||| || | ||||| || ||| || | ||| | || | || | | || || Sbjct 27691 CCGTTGGAGTTTCCGTTTGTACCGGCAATGTAAGCACCAGTGGCGCGGATTCTGTGAACA 27632 Query 79647 GTGGATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTA 79706 | || |||||| || || | ||| || || || || ||| | || ||||| Sbjct 27631 -TTGAGTCCGATACCACCTGCGTTCTTTGAAATCATGGCACAAATCTTCAAAGTGTCGTA 27573 Query 79707 GATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGT- 79765 ||| || || || ||| |||||||| ||| |||||||| || | |||| | Sbjct 27572 GATACCATCAATGCTGTCCTCCTTCATGTCGATGAGGAAGCATGAAGAAAGTTGTGCCTG 27513 Query 79766 TGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCA 79825 || | ||||| || || || || || | ||||| |||||| |||| | ||||| Sbjct 27512 TGGT-GTACCAGCAGCAAAAAGTGTTGGTGAGGCGTGGGTGAAGTACTTGCTGGACATCA 27454 Query 79826 GATCGTACGTCTCCTTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCA 79885 | ||| || || || | | | || |||||||| || ||||| ||||| |||| Sbjct 27453 AGTTGTAAGTTTCGATGGCAGCCTCAATATCCTCGCCGTGTATTCCGACAGCGACACGCA 27394 Query 79886 TGA 79888 ||| Sbjct 27393 TGA 27391 Score = 185 bits (204), Expect = 1e-41 Identities = 409/606 (67%), Gaps = 8/606 (1%) Strand=Plus/Plus Query 19116 TCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTCCGCGAGACATACG 19175 ||||||| ||||| ||||| || || ||||| || | | | | ||| || ||| Sbjct 27391 TCATGCGTGTCGCTGTCGGAATACACGGCGAGGATATTGAGGCTGCCATCGAAACTTACA 27450 Query 19176 ACCTGATGAGCCAG-AAGTTCTTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTACG 19234 || ||||| |||| |||| |||||| ||||| | || || ||||| || ||||| Sbjct 27451 ACTTGATGT-CCAGCAAGTACTTCACCCACGCCTCACCAACACTTTTTGCTGCTGGTAC- 27508 Query 19235 AACAACCCGCAGA--TGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGG 19292 || || ||| | | || || ||||| | | |||||||| ||||||||||| | Sbjct 27509 -ACCACAGGCACAACTTTCTTCATGCTTCCTCATCGACATGAAGGAGGACAGCATTGATG 27567 Query 19293 GCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGGA 19352 | |||||||| || | ||| || || || || ||| | || |||||||| Sbjct 27568 GTATCTACGACACTTTGAAGATTTGTGCCATGATTTCAAAGAACGCAGGTGGTATCGGAC 27627 Query 19353 TCCACTGCTCGAATA-TCCGGTCGAGTGGTACACGAATCAATGGGACGAACGGAGTAGCC 19411 || | || || | | |||| | | |||| | || || || |||||| || Sbjct 27628 TCAA-TGTTCACAGAATCCGCGCCACTGGTGCTTACATTGCCGGTACAAACGGAAACTCC 27686 Query 19412 GACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGG 19471 |||| ||||| || ||||| || || ||||||||||| || | || || | || || Sbjct 27687 AACGGAATCGTTCCTATGCTTCGGGTTTTCAACAACACCGCTCGATATGTTGATCAAGGT 27746 Query 19472 GGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATG 19531 || ||| || || | ||||||||||||||||||||||||||||| || || | Sbjct 27747 GGTAACAAGCGACCTGGTGCTTTCGCCATCTACCTCGAGCCATGGCACGCCGATGTTTTC 27806 Query 19532 GATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTC 19591 || |||||||| || || |||||| || | |||||| | || || || || ||| Sbjct 27807 GAGTTCCTCGACCTCCGAAAGAACCACGGAAAGGAGGAGGTTCGTGCCCGTGATCTTTTC 27866 Query 19592 ACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGGCAC 19651 ||| | |||||||| || || |||||| || ||||| ||| || || ||| Sbjct 27867 TACGCCCTCTGGATTCCAGATCTCTTCATGAAGCGTGTTGAAAAGAACCTTGACTGGACA 27926 Query 19652 CTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGCGTTCAATGAG 19711 |||||||||| | || || ||||| | ||||||||||||| || | ||| | | Sbjct 27927 TTGATGTGCCCTAATGAGTGTCCTGGTTTGGCCGACGTCTACGGTGACGAATTCGAGGCT 27986 Query 19712 TTGTAC 19717 |||||| Sbjct 27987 TTGTAC 27992 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 20619 TCAAGGACATTTACAGGACCGTATGGGAAATCCCACAGAAGAGCATCATCGACATGGCGG 20678 |||||| | |||||| ||| || ||||||||| |||| | |||| | | ||||| | Sbjct 28909 TCAAGGCCCTTTACAAGACTGTTTGGGAAATCTCACAACGTACCATCGTTCAGATGGCTG 28968 Query 20679 CCGATCGCGGCGCCTACATCGACCAGTCCCAGTCGCTCAATGTCTTCATGGAGAATCCGA 20738 |||| || || || | ||| || || || || || | || || |||| || |||| | Sbjct 28969 CCGACCGTGGTGCGTTCATTGATCAATCTCAATCAATGAACATCCACATGAAGGATCCAA 29028 Query 20739 GCCTGGCGAAGCTGAGCTCCATGCATATGTACGGCTGGCACAAGGGGCTCAAGACGGGCA 20798 | ||| |||| | | | |||||| | |||||| | ||| || ||||| || | Sbjct 29029 CCATGGGGAAGATTACCAGTATGCATTTCGCAGGCTGGAAGTTGGGTCTTAAGACTGGAA 29088 Query 20799 TGTACTATCTGCGGAC 20814 |||||||||| || || Sbjct 29089 TGTACTATCTCCGTAC 29104 >seq2036 Length=314316 Score = 123 bits (136), Expect = 3e-23 Identities = 308/456 (68%), Gaps = 20/456 (4%) Strand=Plus/Minus Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTT 60031 ||||| |||||||| | || ||||| ||| || || || ||||||||| ||| || || Sbjct 236063 TTTGCTCAACGTCTTGTTGCCTTTGC-TGCTGTTGAGGGTATCTTCTTCAGTGGTTCTTT 236005 Query 60032 CTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGA 60091 | | || |||||| | || ||||||||||||||| | || || | ||||||||||| Sbjct 236004 CGCATCCATCTTCTGGTTGAAGAAGCGTGGCCTCATGGCTGGTCTTACCTTCTCCAACGA 235945 Query 60092 GCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGACGCTCTATTCACACCT 60151 | |||| ||||| || ||||| ||||| || || ||| || | ||| ||| | || Sbjct 235944 GTTGATCTCCCGTGATGAGGGTCTCCACACCGACTTCGCA-TG-CCTTCTCTTCTC-CCA 235888 Query 60152 ATTGGAAAAATGCCCTTCCAAGG--ATATTCACAAG-ATTGTTCAGTG-GGCTTGTGAAG 60207 ||| | | |||| ||||| | || |||| | | ||| | |||| || Sbjct 235887 CTTGAAGCATCGCCCAAGCAAGGCAGCAGTC-CAAGCAGTCATCACCGAGGCTGTCGAGA 235829 Query 60208 TGGAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGAG 60267 | ||| |||||| | || || || ||||| ||| || | || ||| | || Sbjct 235828 TTGAGCAAGAGTTCTTGACTGAGGCTCTTCCTTGCGCGCTTCTCGGCATGAATGCCAACC 235769 Query 60268 AAATGACGCAGTACATTCAGTTTGTCGCGGACCGCCT-----CATGGCCCAGTTTGGAGA 60322 |||| ||| |||||| |||||||||| || || || | | | | |||| Sbjct 235768 TGATGAAGCAATACATTGAGTTTGTCGCCGATCGTCTTCTCCTTTCTCTCGGCAATGAGA 235709 Query 60323 AGGACCAATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGG 60382 ||| ||||| || ||||| ||||||| ||||||| |||||| | | || Sbjct 235708 AGG-----TTTACAAGGTTGCCAACCCATTCGACTTCATGGAGAACATCTCTCTCGCCGG 235654 Query 60383 GAAGACCAACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 |||||||||||||| |||||||| |||| ||||| Sbjct 235653 AAAGACCAACTTCTTCGAGAAGCGTGTCGCTGATTA 235618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548507034653040