Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19]
2,591 sequences; 63,226,382 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq2371 208 8e-49
seq2036 123 3e-23
>seq2371
Length=131994
Score = 208 bits (230), Expect = 8e-49
Identities = 888/1383 (64%), Gaps = 44/1383 (3%)
Strand=Plus/Minus
Query 78534 GTAGATGTTGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGA 78593
||||||||||| ||||| |||||||| ||||||| || | || || |||
Sbjct 28757 GTAGATGTTGGAGGTGTATGGCTCGAAGCACTCGTTGAATCCAAGAATTTGACTGGTACT 28698
Query 78594 GGCGGTCGGCATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTGATC--TCG 78651
||| || ||||| || ||||| || | | || || | |||||| |||| | ||
Sbjct 28697 GGCAGTTGGCATAGGAGCGACGAGCAAACTGTTGCGGATACCATG----TTGAGCAATCT 28642
Query 78652 AC--CTTTAGGCCG------TCCCAAAATTCATTCGCCGCGATCCCCCACATGTCCGGTT 78703
| ||||| || ||||||| || | | | | ||||||||||| ||
Sbjct 28641 GCTGCTTTAAGCTAGCCCAATCCCAAAGATCCGTAGGTGTAACACCCCACATGTCATATT 28582
Query 78704 GAAGGATACCCTCGGACGCCGGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTGG 78763
| || |||| ||| || || || || | | | ||||| || | || | ||| |
Sbjct 28581 GGAGCTCGCCCTTGGAGGCAGGTGAGCCTTGGTAAGTCTCATATGTACCATGAATCTTTG 28522
Query 78764 CGAGTTCGCATGACTCGAG-CAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTG 78822
| | || |||| || || || |||||||| | | |||||||| |||||
Sbjct 28521 CCAACTC-CATGGAAGCAGTCAAAGCAGCGTGGTAAATGGTTTCGAAGATTTGGATGTTG 28463
Query 78823 AGCTCGCGCGCCT-TGGTCTCGTCGAACGAAAGGCCGAGCATCATGAAGACATCGGCCAG 78881
|| | |||| ||| | ||||| | ||| | || || ||| |||| || ||
Sbjct 28462 AGGTGCTTGGCCTCTGGGGAC-TCGAATGGAAGACGAAGAGCCAAGAAAGCATCAGCAAG 28404
Query 78882 GCCCTGGACGCCGATAGCGATCGGTCGGTGGCGCATGTTGCTCTTTCGGGCCGCCTCGGT 78941
|| ||||| || | ||| || |||| |||||| | |||||||||| ||| ||||
Sbjct 28403 ACCTTGGACACCAAGAGCAATAGGTCTGTGGCGGAAATTGCTCTTTCTTGCC---TCGGG 28347
Query 78942 C---GGGTAAAAGTTCCGATCGATGACGCGGTTCAGGTTACGCGTGACGACC-CGAGTCA 78997
| ||||| |||| |||||| | ||||| ||| | ||||||| | | ||
Sbjct 28346 CACAGGGTAGTAGTTGATATCGATAATCTTGTTCAAGTT---CTTGACGACAACTTGGCA 28290
Query 78998 --CCTCGTACAATTTGGCGAAATCAAAAT--GATTTCCTTTGATGAAAGTCGGTAGGCA- 79052
|||||| | || ||| ||| || | || | | || || | || || |
Sbjct 28289 GACCTCGTGAAGCTTCTGGAAGTCATAAGTGGCAGTCTTCTCATCAACATATGTTGGGAG 28230
Query 79053 ---CAGCGATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTC 79109
||||||||||| |||||| || || ||| || || | | |||| |||||
Sbjct 28229 AGCCAGCGATGCCAAGTTGCAAACAGCAACCTCATCAGGTGCACAGTATTCGACAATTTC 28170
Query 79110 TGTGCACAAATTAGACGACTT--GATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTA 79167
|| ||||| || || ||| |||||| || | ||||| ||||||||||| |||
Sbjct 28169 AGTACACAAGTTGGAG--CTTCGGATGGTACCAAGATTCTTTTGGTTGCTCTTTCGGTTG 28112
Query 79168 CAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCG 79227
|| || |||||||| |||| | || | || ||||| ||| || ||| | |
Sbjct 28111 CAAGCATCCTTGTAAAGCATGAAAGGGTTTCCAGTCTCGGTTTGAGCCTCGAGGATAGAG 28052
Query 79228 TCCCAGATGTCCCGGGCCCGGACAACCTTCTTGTACCGACCCTGTGCGACGTACGTCCGG 79287
| ||| | | ||||| || ||| | | |||| | |||| || |
Sbjct 28051 TACCAAAGCTTTTGGGCCTTGATGCTCTTGCGGCCCTTGCCCTCAGACTCGTATTTCTCG 27992
Query 79288 TACAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCAC 79347
||||| | | ||| | || || ||||| |||| || || || ||||| | ||||||
Sbjct 27991 TACAAAGCCTCGAATTCGTCACCGTAGACGTCGGCCAAACCAGGACACTCATTAGGGCAC 27932
Query 79348 ATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGG 79407
|||| |||||| || ||| ||||| || ||||||||| || || ||||| |||
Sbjct 27931 ATCAATGTCCAGTCAAGGTTCTTTTCAACACGCTTCATGAAGAGATCTGGAATCCAGAGG 27872
Query 79408 GCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGA 79467
|| ||| || || ||| ||| | |||||| | || |||||| || || |||||
Sbjct 27871 GCGTAGAAAAGATCACGGGCACGAACCTCCTCCTTTCCGTGGTTCTTTCGGAGGTCGAGG 27812
Query 79468 AAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTG 79527
|| || | | ||||||||||| ||||| || ||||||||||| | ||| ||||||
Sbjct 27811 AACTCGAAAACATCGGCGTGCCATGGCTCGAGGTAGATGGCGAAAGCACCAGGTCGCTTG 27752
Query 79528 CCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATG 79587
|| || || | || || || || |||||||||||||| || ||||| || |||||
Sbjct 27751 TTACCACCTTGATCAACATATCGAGCGGTGTTGTTGAAAACCCGAAGCATAGGAACGATT 27692
Query 79588 CCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGC-CCGAATGTTCGAGCA 79646
|||| || | ||||| || ||| || | ||| | || | || | | || ||
Sbjct 27691 CCGTTGGAGTTTCCGTTTGTACCGGCAATGTAAGCACCAGTGGCGCGGATTCTGTGAACA 27632
Query 79647 GTGGATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTA 79706
| || |||||| || || | ||| || || || || ||| | || |||||
Sbjct 27631 -TTGAGTCCGATACCACCTGCGTTCTTTGAAATCATGGCACAAATCTTCAAAGTGTCGTA 27573
Query 79707 GATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGT- 79765
||| || || || ||| |||||||| ||| |||||||| || | |||| |
Sbjct 27572 GATACCATCAATGCTGTCCTCCTTCATGTCGATGAGGAAGCATGAAGAAAGTTGTGCCTG 27513
Query 79766 TGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCA 79825
|| | ||||| || || || || || | ||||| |||||| |||| | |||||
Sbjct 27512 TGGT-GTACCAGCAGCAAAAAGTGTTGGTGAGGCGTGGGTGAAGTACTTGCTGGACATCA 27454
Query 79826 GATCGTACGTCTCCTTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCA 79885
| ||| || || || | | | || |||||||| || ||||| ||||| ||||
Sbjct 27453 AGTTGTAAGTTTCGATGGCAGCCTCAATATCCTCGCCGTGTATTCCGACAGCGACACGCA 27394
Query 79886 TGA 79888
|||
Sbjct 27393 TGA 27391
Score = 185 bits (204), Expect = 1e-41
Identities = 409/606 (67%), Gaps = 8/606 (1%)
Strand=Plus/Plus
Query 19116 TCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTCCGCGAGACATACG 19175
||||||| ||||| ||||| || || ||||| || | | | | ||| || |||
Sbjct 27391 TCATGCGTGTCGCTGTCGGAATACACGGCGAGGATATTGAGGCTGCCATCGAAACTTACA 27450
Query 19176 ACCTGATGAGCCAG-AAGTTCTTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTACG 19234
|| ||||| |||| |||| |||||| ||||| | || || ||||| || |||||
Sbjct 27451 ACTTGATGT-CCAGCAAGTACTTCACCCACGCCTCACCAACACTTTTTGCTGCTGGTAC- 27508
Query 19235 AACAACCCGCAGA--TGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGG 19292
|| || ||| | | || || ||||| | | |||||||| ||||||||||| |
Sbjct 27509 -ACCACAGGCACAACTTTCTTCATGCTTCCTCATCGACATGAAGGAGGACAGCATTGATG 27567
Query 19293 GCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGGA 19352
| |||||||| || | ||| || || || || ||| | || ||||||||
Sbjct 27568 GTATCTACGACACTTTGAAGATTTGTGCCATGATTTCAAAGAACGCAGGTGGTATCGGAC 27627
Query 19353 TCCACTGCTCGAATA-TCCGGTCGAGTGGTACACGAATCAATGGGACGAACGGAGTAGCC 19411
|| | || || | | |||| | | |||| | || || || |||||| ||
Sbjct 27628 TCAA-TGTTCACAGAATCCGCGCCACTGGTGCTTACATTGCCGGTACAAACGGAAACTCC 27686
Query 19412 GACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGG 19471
|||| ||||| || ||||| || || ||||||||||| || | || || | || ||
Sbjct 27687 AACGGAATCGTTCCTATGCTTCGGGTTTTCAACAACACCGCTCGATATGTTGATCAAGGT 27746
Query 19472 GGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATG 19531
|| ||| || || | ||||||||||||||||||||||||||||| || || |
Sbjct 27747 GGTAACAAGCGACCTGGTGCTTTCGCCATCTACCTCGAGCCATGGCACGCCGATGTTTTC 27806
Query 19532 GATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTC 19591
|| |||||||| || || |||||| || | |||||| | || || || || |||
Sbjct 27807 GAGTTCCTCGACCTCCGAAAGAACCACGGAAAGGAGGAGGTTCGTGCCCGTGATCTTTTC 27866
Query 19592 ACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGGCAC 19651
||| | |||||||| || || |||||| || ||||| ||| || || |||
Sbjct 27867 TACGCCCTCTGGATTCCAGATCTCTTCATGAAGCGTGTTGAAAAGAACCTTGACTGGACA 27926
Query 19652 CTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGCGTTCAATGAG 19711
|||||||||| | || || ||||| | ||||||||||||| || | ||| | |
Sbjct 27927 TTGATGTGCCCTAATGAGTGTCCTGGTTTGGCCGACGTCTACGGTGACGAATTCGAGGCT 27986
Query 19712 TTGTAC 19717
||||||
Sbjct 27987 TTGTAC 27992
Score = 84.2 bits (92), Expect = 2e-11
Identities = 136/196 (69%), Gaps = 0/196 (0%)
Strand=Plus/Plus
Query 20619 TCAAGGACATTTACAGGACCGTATGGGAAATCCCACAGAAGAGCATCATCGACATGGCGG 20678
|||||| | |||||| ||| || ||||||||| |||| | |||| | | ||||| |
Sbjct 28909 TCAAGGCCCTTTACAAGACTGTTTGGGAAATCTCACAACGTACCATCGTTCAGATGGCTG 28968
Query 20679 CCGATCGCGGCGCCTACATCGACCAGTCCCAGTCGCTCAATGTCTTCATGGAGAATCCGA 20738
|||| || || || | ||| || || || || || | || || |||| || |||| |
Sbjct 28969 CCGACCGTGGTGCGTTCATTGATCAATCTCAATCAATGAACATCCACATGAAGGATCCAA 29028
Query 20739 GCCTGGCGAAGCTGAGCTCCATGCATATGTACGGCTGGCACAAGGGGCTCAAGACGGGCA 20798
| ||| |||| | | | |||||| | |||||| | ||| || ||||| || |
Sbjct 29029 CCATGGGGAAGATTACCAGTATGCATTTCGCAGGCTGGAAGTTGGGTCTTAAGACTGGAA 29088
Query 20799 TGTACTATCTGCGGAC 20814
|||||||||| || ||
Sbjct 29089 TGTACTATCTCCGTAC 29104
>seq2036
Length=314316
Score = 123 bits (136), Expect = 3e-23
Identities = 308/456 (68%), Gaps = 20/456 (4%)
Strand=Plus/Minus
Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTT 60031
||||| |||||||| | || ||||| ||| || || || ||||||||| ||| || ||
Sbjct 236063 TTTGCTCAACGTCTTGTTGCCTTTGC-TGCTGTTGAGGGTATCTTCTTCAGTGGTTCTTT 236005
Query 60032 CTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGA 60091
| | || |||||| | || ||||||||||||||| | || || | |||||||||||
Sbjct 236004 CGCATCCATCTTCTGGTTGAAGAAGCGTGGCCTCATGGCTGGTCTTACCTTCTCCAACGA 235945
Query 60092 GCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGACGCTCTATTCACACCT 60151
| |||| ||||| || ||||| ||||| || || ||| || | ||| ||| | ||
Sbjct 235944 GTTGATCTCCCGTGATGAGGGTCTCCACACCGACTTCGCA-TG-CCTTCTCTTCTC-CCA 235888
Query 60152 ATTGGAAAAATGCCCTTCCAAGG--ATATTCACAAG-ATTGTTCAGTG-GGCTTGTGAAG 60207
||| | | |||| ||||| | || |||| | | ||| | |||| ||
Sbjct 235887 CTTGAAGCATCGCCCAAGCAAGGCAGCAGTC-CAAGCAGTCATCACCGAGGCTGTCGAGA 235829
Query 60208 TGGAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGAG 60267
| ||| |||||| | || || || ||||| ||| || | || ||| | ||
Sbjct 235828 TTGAGCAAGAGTTCTTGACTGAGGCTCTTCCTTGCGCGCTTCTCGGCATGAATGCCAACC 235769
Query 60268 AAATGACGCAGTACATTCAGTTTGTCGCGGACCGCCT-----CATGGCCCAGTTTGGAGA 60322
|||| ||| |||||| |||||||||| || || || | | | | ||||
Sbjct 235768 TGATGAAGCAATACATTGAGTTTGTCGCCGATCGTCTTCTCCTTTCTCTCGGCAATGAGA 235709
Query 60323 AGGACCAATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGG 60382
||| ||||| || ||||| ||||||| ||||||| |||||| | | ||
Sbjct 235708 AGG-----TTTACAAGGTTGCCAACCCATTCGACTTCATGGAGAACATCTCTCTCGCCGG 235654
Query 60383 GAAGACCAACTTCTTTGAGAAGCGGGTCGGGGATTA 60418
|||||||||||||| |||||||| |||| |||||
Sbjct 235653 AAAGACCAACTTCTTCGAGAAGCGTGTCGCTGATTA 235618
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548507034653040
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