Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19]
2,591 sequences; 63,226,382 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq2371 187 3e-42
seq2036 125 8e-24
seq1826 96.9 4e-15
>seq2371
Length=131994
Score = 187 bits (206), Expect = 3e-42
Identities = 501/754 (66%), Gaps = 18/754 (2%)
Strand=Plus/Plus
Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGAC-TACACGCGTGTCCGTGAGACGTAC 53251
||||||| ||||| | || || ||||| || || | | || || | || || |||
Sbjct 27391 TCATGCGTGTCGCTGTCGGAATACACGGCGAGGATATTGAGGC-TGCCATCGAAACTTAC 27449
Query 53252 GACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACG 53311
|||| ||| | |||||||| || |||||| | ||||| || || ||||||||
Sbjct 27450 AACTTGATGTCCAGCAAGTACTTCACCCACGCCTCACCAACACTTTTTGCTGCTGGTACA 27509
Query 53312 AATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGC 53371
|| | || | || |||||||| | | |||||||| ||| || || ||
Sbjct 27510 CCACAGGCACAACTTTCTTCATGCTTCCTCATCGACATGAAGGAGGACAGCATTGATGGT 27569
Query 53372 ATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATC 53431
|||||||| || | ||| |||||| || || ||| | ||||||||||| ||
Sbjct 27570 ATCTACGACACTTTGAAGATTTGTGCCATGATTTCAAAGAACGCAGGTGGTATCGGACTC 27629
Query 53432 CACTGCTC---GAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCC 53488
| || || ||| |||| || | || | || || || ||||| | ||
Sbjct 27630 AA-TGTTCACAGAA--TCCGCGCCACTGGTGCTTACATTGCCGGTACAAACGGAAACTCC 27686
Query 53489 GATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGT 53548
| |||||||| |||||||| || || ||||||||||| || || || || | || |||
Sbjct 27687 AACGGAATCGTTCCTATGCTTCGGGTTTTCAACAACACCGCTCGATATGTTGATCAAGGT 27746
Query 53549 GGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATG 53608
||| ||||| || | |||||||||||||||||||| ||||||||||| || |
Sbjct 27747 GGTAACAAGCGACCTGGTGCTTTCGCCATCTACCTCGAGCCATGGCACGCCGATGTTTTC 27806
Query 53609 GAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT- 53667
||||| ||||| || || ||| || || | || ||| | || |||||| || ||
Sbjct 27807 GAGTTCCTCGACCTCCGAAAGAACCACGGAAAGGAGGAGGTTCGTGCCCGTGATCTTTTC 27866
Query 53668 TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTA 53727
||| || || |||||||| || ||||||||| | || || ||| || || |||
Sbjct 27867 TAC-GCCCTCTGGATTCCAGATCTCTTCATGAAGCGTGTTGAAAAGAACCTTGACTGGAC 27925
Query 53728 CCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGA 53787
|||||||||| || ||||| || || | | ||||||||||| || || | |
Sbjct 27926 ATTGATGTGCCCTAATGAGTGTCCTGGTTTGGCCGACGTCTACGGTGACGAATTCGAGGC 27985
Query 53788 GATGTATCGGACGTACGCAGT-TCAGGGC---CGCTACAAGAAGAAGGTCAAGGCGCGTG 53843
|||| || |||| ||| | ||||| || ||||| | ||||||| |
Sbjct 27986 TTTGTACGAGAAATACG-AGTCTGAGGGCAAGGGCCGCAAGAGCA---TCAAGGCCCAAA 28041
Query 53844 AGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACA 53903
|| | ||| | | |||||| || || ||||| |||| || | |||| ||||
Sbjct 28042 AGCTTTGGTACTCTATCCTCGAGGCTCAAACCGAGACTGGAAACCCTTTCATGCTTTACA 28101
Query 53904 AGGATTCGGTCAACGAGAAGAGCAACCAGAAGAA 53937
||||| | |||| ||||||||||| |||||
Sbjct 28102 AGGATGCTTGCAACCGAAAGAGCAACCAAAAGAA 28135
>seq2036
Length=314316
Score = 125 bits (138), Expect = 8e-24
Identities = 312/459 (68%), Gaps = 26/459 (6%)
Strand=Plus/Plus
Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522
|||||| |||| ||||| || || ||||||||||| || | | ||||||||||||||
Sbjct 235618 TAATCAGCGACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCGAGAGAGATGTTCTCCATG 235677
Query 74523 CAGTCGAAAGGGTTCTTTGCACC---GTAAATAGGCTTCTC----CCCAAACTGTGCCAT 74575
||||||| ||||| ||| | ||||| |||||| || | | | |
Sbjct 235678 AAGTCGAATGGGTTG---GCAACCTTGTAAAC---CTTCTCATTGCCGAGAGAAAGG-AG 235730
Query 74576 GAGGCGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAG 74635
|| ||||| || ||||| | |||||| ||| |||| |||| |||||||| ||
Sbjct 235731 AAGACGATCGGCGACAAACTCAATGTATTGCTTCATCAGGTTGGCATTCATGCCGAGAAG 235790
Query 74636 TTTGCACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCC-CATTGGACAA 74694
||| || || ||||| || | ||||| ||| | |||| |||| | || |
Sbjct 235791 CGCGCAAGGAAGAGCCTCAGTCAAGAACTCTTGCTCAATCTCGACAGCCTCGGTGATGAC 235850
Query 74695 T-CTTGTGAATGT--CTTTGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGC-GTCACG 74750
| |||| || || | ||| |||| | | ||| ||| ||| | || | || |
Sbjct 235851 TGCTTG-GACTGCTGCCTTGCTTGGGCGATGCT---TCAAGTGGGAGAAGAGAAGGCATG 235906
Query 74751 GCAAACTCCTGATGCGAG-CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCC 74809
| || || || ||| || ||||| | | ||||| || || || || | ||| ||
Sbjct 235907 -CGAAGTCGGTGTG-GAGACCCTCATCACGGGAGATCAACTCGTTGGAGAAGGTAAGACC 235964
Query 74810 AGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGAT 74869
|| ||| || ||||||||||||||||| ||||||| ||| |||||||||||||||||
Sbjct 235965 AGCCATGAGGCCACGCTTCTTCAACCAGAAGATGGATGCGAAAGAACCACTGAAGAAGAT 236024
Query 74870 GCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAA 74908
|| || ||| |||||||| ||||| ||||| || ||
Sbjct 236025 ACCCTCAACAGCAGCAAAGGCAACAAGACGTTGAGCAAA 236063
>seq1826
Length=200848
Score = 96.9 bits (106), Expect = 4e-15
Identities = 177/253 (70%), Gaps = 10/253 (4%)
Strand=Plus/Plus
Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364
|| ||||||||||||| ||||| ||||| |||| ||||| ||||| |||| || | |
Sbjct 57149 GTAAAAATGTAACGAGGACTTGCCGCATCAGTGCCTCCAGCGAGACGACTACCAAAATTT 57208
Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGT-TGAC 117423
||||| ||||| | ||||| ||||| | ||| ||||| ||||| | ||||| |
Sbjct 57209 CCACTTGGCTCGAGACAGTTCACATTGTTAGAGCCGACAAAATTTTGCG-CAAGTCCAAT 57267
Query 117424 AATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGC--CGTCTGCTCCGCCACGTAG 117481
|||||| || | | || ||||| ||||| || || ||| | |||| |||||
Sbjct 57268 AATCGTCTGATGCATGGAAGCTTCACCGTGGTGGTAAGCTACGTTT--TCCGAAACGTAT 57325
Query 117482 CCCGCCAGCTGAGCCACCTTC--ATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAA 117539
|| |||||| | | |||||| || || ||| ||||| ||| | ||| ||| | |
Sbjct 57326 CCACCCAGCTCAACAACCTTCAAATCTCGAACG--AGGTTGCGCTTAAAGCAAGCAAACA 57383
Query 117540 TCACCTTGCGCTG 117552
| || || || ||
Sbjct 57384 TGACTTTTCGTTG 57396
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547198277041800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |