Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19] 2,591 sequences; 63,226,382 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq2371 187 3e-42 seq2036 125 8e-24 seq1826 96.9 4e-15 >seq2371 Length=131994 Score = 187 bits (206), Expect = 3e-42 Identities = 501/754 (66%), Gaps = 18/754 (2%) Strand=Plus/Plus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGAC-TACACGCGTGTCCGTGAGACGTAC 53251 ||||||| ||||| | || || ||||| || || | | || || | || || ||| Sbjct 27391 TCATGCGTGTCGCTGTCGGAATACACGGCGAGGATATTGAGGC-TGCCATCGAAACTTAC 27449 Query 53252 GACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACG 53311 |||| ||| | |||||||| || |||||| | ||||| || || |||||||| Sbjct 27450 AACTTGATGTCCAGCAAGTACTTCACCCACGCCTCACCAACACTTTTTGCTGCTGGTACA 27509 Query 53312 AATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGC 53371 || | || | || |||||||| | | |||||||| ||| || || || Sbjct 27510 CCACAGGCACAACTTTCTTCATGCTTCCTCATCGACATGAAGGAGGACAGCATTGATGGT 27569 Query 53372 ATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATC 53431 |||||||| || | ||| |||||| || || ||| | ||||||||||| || Sbjct 27570 ATCTACGACACTTTGAAGATTTGTGCCATGATTTCAAAGAACGCAGGTGGTATCGGACTC 27629 Query 53432 CACTGCTC---GAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCC 53488 | || || ||| |||| || | || | || || || ||||| | || Sbjct 27630 AA-TGTTCACAGAA--TCCGCGCCACTGGTGCTTACATTGCCGGTACAAACGGAAACTCC 27686 Query 53489 GATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGT 53548 | |||||||| |||||||| || || ||||||||||| || || || || | || ||| Sbjct 27687 AACGGAATCGTTCCTATGCTTCGGGTTTTCAACAACACCGCTCGATATGTTGATCAAGGT 27746 Query 53549 GGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATG 53608 ||| ||||| || | |||||||||||||||||||| ||||||||||| || | Sbjct 27747 GGTAACAAGCGACCTGGTGCTTTCGCCATCTACCTCGAGCCATGGCACGCCGATGTTTTC 27806 Query 53609 GAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT- 53667 ||||| ||||| || || ||| || || | || ||| | || |||||| || || Sbjct 27807 GAGTTCCTCGACCTCCGAAAGAACCACGGAAAGGAGGAGGTTCGTGCCCGTGATCTTTTC 27866 Query 53668 TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTA 53727 ||| || || |||||||| || ||||||||| | || || ||| || || ||| Sbjct 27867 TAC-GCCCTCTGGATTCCAGATCTCTTCATGAAGCGTGTTGAAAAGAACCTTGACTGGAC 27925 Query 53728 CCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGA 53787 |||||||||| || ||||| || || | | ||||||||||| || || | | Sbjct 27926 ATTGATGTGCCCTAATGAGTGTCCTGGTTTGGCCGACGTCTACGGTGACGAATTCGAGGC 27985 Query 53788 GATGTATCGGACGTACGCAGT-TCAGGGC---CGCTACAAGAAGAAGGTCAAGGCGCGTG 53843 |||| || |||| ||| | ||||| || ||||| | ||||||| | Sbjct 27986 TTTGTACGAGAAATACG-AGTCTGAGGGCAAGGGCCGCAAGAGCA---TCAAGGCCCAAA 28041 Query 53844 AGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACA 53903 || | ||| | | |||||| || || ||||| |||| || | |||| |||| Sbjct 28042 AGCTTTGGTACTCTATCCTCGAGGCTCAAACCGAGACTGGAAACCCTTTCATGCTTTACA 28101 Query 53904 AGGATTCGGTCAACGAGAAGAGCAACCAGAAGAA 53937 ||||| | |||| ||||||||||| ||||| Sbjct 28102 AGGATGCTTGCAACCGAAAGAGCAACCAAAAGAA 28135 >seq2036 Length=314316 Score = 125 bits (138), Expect = 8e-24 Identities = 312/459 (68%), Gaps = 26/459 (6%) Strand=Plus/Plus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 |||||| |||| ||||| || || ||||||||||| || | | |||||||||||||| Sbjct 235618 TAATCAGCGACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCGAGAGAGATGTTCTCCATG 235677 Query 74523 CAGTCGAAAGGGTTCTTTGCACC---GTAAATAGGCTTCTC----CCCAAACTGTGCCAT 74575 ||||||| ||||| ||| | ||||| |||||| || | | | | Sbjct 235678 AAGTCGAATGGGTTG---GCAACCTTGTAAAC---CTTCTCATTGCCGAGAGAAAGG-AG 235730 Query 74576 GAGGCGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAG 74635 || ||||| || ||||| | |||||| ||| |||| |||| |||||||| || Sbjct 235731 AAGACGATCGGCGACAAACTCAATGTATTGCTTCATCAGGTTGGCATTCATGCCGAGAAG 235790 Query 74636 TTTGCACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCC-CATTGGACAA 74694 ||| || || ||||| || | ||||| ||| | |||| |||| | || | Sbjct 235791 CGCGCAAGGAAGAGCCTCAGTCAAGAACTCTTGCTCAATCTCGACAGCCTCGGTGATGAC 235850 Query 74695 T-CTTGTGAATGT--CTTTGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGC-GTCACG 74750 | |||| || || | ||| |||| | | ||| ||| ||| | || | || | Sbjct 235851 TGCTTG-GACTGCTGCCTTGCTTGGGCGATGCT---TCAAGTGGGAGAAGAGAAGGCATG 235906 Query 74751 GCAAACTCCTGATGCGAG-CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCC 74809 | || || || ||| || ||||| | | ||||| || || || || | ||| || Sbjct 235907 -CGAAGTCGGTGTG-GAGACCCTCATCACGGGAGATCAACTCGTTGGAGAAGGTAAGACC 235964 Query 74810 AGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGAT 74869 || ||| || ||||||||||||||||| ||||||| ||| ||||||||||||||||| Sbjct 235965 AGCCATGAGGCCACGCTTCTTCAACCAGAAGATGGATGCGAAAGAACCACTGAAGAAGAT 236024 Query 74870 GCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAA 74908 || || ||| |||||||| ||||| ||||| || || Sbjct 236025 ACCCTCAACAGCAGCAAAGGCAACAAGACGTTGAGCAAA 236063 >seq1826 Length=200848 Score = 96.9 bits (106), Expect = 4e-15 Identities = 177/253 (70%), Gaps = 10/253 (4%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 || ||||||||||||| ||||| ||||| |||| ||||| ||||| |||| || | | Sbjct 57149 GTAAAAATGTAACGAGGACTTGCCGCATCAGTGCCTCCAGCGAGACGACTACCAAAATTT 57208 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGT-TGAC 117423 ||||| ||||| | ||||| ||||| | ||| ||||| ||||| | ||||| | Sbjct 57209 CCACTTGGCTCGAGACAGTTCACATTGTTAGAGCCGACAAAATTTTGCG-CAAGTCCAAT 57267 Query 117424 AATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGC--CGTCTGCTCCGCCACGTAG 117481 |||||| || | | || ||||| ||||| || || ||| | |||| ||||| Sbjct 57268 AATCGTCTGATGCATGGAAGCTTCACCGTGGTGGTAAGCTACGTTT--TCCGAAACGTAT 57325 Query 117482 CCCGCCAGCTGAGCCACCTTC--ATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAA 117539 || |||||| | | |||||| || || ||| ||||| ||| | ||| ||| | | Sbjct 57326 CCACCCAGCTCAACAACCTTCAAATCTCGAACG--AGGTTGCGCTTAAAGCAAGCAAACA 57383 Query 117540 TCACCTTGCGCTG 117552 | || || || || Sbjct 57384 TGACTTTTCGTTG 57396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547198277041800