Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19]
2,591 sequences; 63,226,382 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq2371 188 8e-43
seq2459 174 2e-38
seq778 174 2e-38
seq1113 125 8e-24
>seq2371
Length=131994
Score = 188 bits (208), Expect = 8e-43
Identities = 639/980 (65%), Gaps = 33/980 (3%)
Strand=Plus/Minus
Query 80782 GCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTA-ACAAC 80840
||||| || | ||||| |||| ||||||| | ||||| ||| | || |||||
Sbjct 28354 GCCTCGGGCACAGGGTAGTAGTTGATATCGATAATCTTGTTCAAGTT-CTTGACGACAAC 28296
Query 80841 CCGTGTAACATCATGAAGTTTCTGAAAGTCG-AATTGG-----TTCCCCTTCACAAATGC 80894
| || || ||||| ||||| ||||| || ||| ||| | | ||| |||
Sbjct 28295 TTGGCAGACCTCGTGAAGCTTCTGGAAGTCATAAGTGGCAGTCTTCTCATCAACATATGT 28236
Query 80895 CGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAG---CATCTGTAAACTC 80951
|| || ||| || |||| ||||| || || ||||| |||| || | ||| ||
Sbjct 28235 TGGGAGAGCCAGCGATGCCAAGTTGCAAACAGCAACCTCATCAGGTGCA-CAGTAT--TC 28179
Query 80952 GACGATTTCCGTGCACAAATTAGAAGACTTA--ATTGTACCCAGGTTTTTCTGGTTTGAC 81009
||| ||||| || ||||| || || ||| || ||||| || || || ||||| |
Sbjct 28178 GACAATTTCAGTACACAAGTTGGAG--CTTCGGATGGTACCAAGATTCTTTTGGTTGCTC 28121
Query 81010 TTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTG 81069
|| ||||||||| |||||||| |||| | ||| | || |||||| || | || |
Sbjct 28120 TTTCGGTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCAGTCTCGGTTTGAGCCTCG 28061
Query 81070 AGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACA 81129
||||| | || ||||| || | ||||||| ||||||| ||||| || | | |
Sbjct 28060 AGGATAGAGTACCAAAGCTTTTGGGCCTTGATGCTCTTGCGGCCCTTGCCCTCAGACTCG 28001
Query 81130 TACTTGGCGTAAGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCG 81189
|| || |||| | ||||| | | |||||| | || | | | || |||||
Sbjct 28000 TATTTCTCGTACAAAGCCTCGAATTCGTCACCGTAGACGTCGGCCAAACCAGGACACTCA 27941
Query 81190 TTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGG 81249
||||||||||||| |||||| || || || ||| ||||||||| || ||
Sbjct 27940 TTAGGGCACATCAATGTCCAGTCAAGGTTCTTTTCAACACGCTTCATGAAGAGATCTGGA 27881
Query 81250 ATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGC 81309
|||||||||||| ||| || || ||| || ||||||| | || ||||| ||
Sbjct 27880 ATCCAGAGGGCGTAGAAAAGATCACGGGCACGAACCTCCTCCTTTCCGTGGTTCTTTCGG 27821
Query 81310 AACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCG-AC-- 81366
| ||||| || || | | || || ||||||||||| || || | ||||| | ||
Sbjct 27820 AGGTCGAGGAACTCGAAAACATCGGCGTGCCATGGCTCGAGGTAGATGGCGAAAGCACCA 27761
Query 81367 ---CCCTTGCGACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAAC 81423
| |||| | ||||| || | || || || || || ||| || || || | |
Sbjct 27760 GGTCGCTTGTTA---CCACCTTGATCAACATATCGAGCGGTGTTGTTGAAAACCCGAAGC 27704
Query 81424 ATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGC 81483
||||| | ||| || | || | ||||| ||||| | || | || |||||||
Sbjct 27703 ATAGGAACGATTCCGTTGGAGTTTCCGTTTGTACCGGCAATGTAAGCACCAGTGGCGCGG 27644
Query 81484 A--CCTTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGT 81541
| | || |||| || ||||| ||||||| |||||||||| ||||| |
Sbjct 27643 ATTCTGTGAACATTG--AGTCCGATACCACCTGCGTTCTTTGAAATCATGGCACAAATCT 27586
Query 81542 TCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTG 81601
||| || || || || || || ||||| || | |||||||| | | ||| || |
Sbjct 27585 TCAAAGTGTCGTAGATACCATCAATGCTGTCCTCCTTCATGTCGATGAGGAAGCATGAAG 27526
Query 81602 ACATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAAC 81661
| | || | | || || ||| || |||||||| | ||||| |||| ||
Sbjct 27525 AAAGTTGTGCCTGTGGTGTACCAGCAGCAAAAAGTGTTGGTGAGGCGTGGGTGAAGTACT 27466
Query 81662 GGTTTGACATCAGGTCATAGGTTTCCTTGAC-GCGTGGAATATCGTCACCGTGAATACCG 81720
| | ||||||| || || ||||| || | || | |||||| || ||||| || |||
Sbjct 27465 TGCTGGACATCAAGTTGTAAGTTTCGATGGCAGCCT-CAATATCCTCGCCGTGTATTCCG 27407
Query 81721 ATAGCTACACGCATAAACAT 81740
| ||| |||||||| | |||
Sbjct 27406 ACAGCGACACGCATGATCAT 27387
>seq2459
Length=125150
Score = 174 bits (192), Expect = 2e-38
Identities = 161/204 (79%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489
|| |||||||| || || |||||||||||||| || | ||| | ||| | ||| |
Sbjct 17381 ACGGGCAAGACCATCACCCTTGAGGTTGAGTCCTCGGACACCATCGACAATGTCAAGTCC 17322
Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549
|| || |||||||||||||||||||| || ||||| |||||| | || |||||||| |||
Sbjct 17321 AAGATCCAGGACAAGGAGGGAATTCCACCGGACCAACAGCGTTTGATCTTTGCTGGAAAG 17262
Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609
||||| ||||||| ||||||||| | ||||| || |||| ||||| || || ||||||
Sbjct 17261 CAACTTGAGGATGGTCGTACCCTTTCGGACTACAACATCCAGAAGGAGTCGACCCTTCAT 17202
Query 27610 CTAGTCTTGCGTCTTCGCGGTGGA 27633
|| ||||| ||||| || || |||
Sbjct 17201 CTCGTCTTACGTCTACGTGGAGGA 17178
>seq778
Length=242110
Score = 174 bits (192), Expect = 2e-38
Identities = 177/228 (78%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||||||||| |||||||| |||||||| ||||| || ||| | ||||| || ||
Sbjct 99337 ATGCAAATCTTCGTCAAGACTCTTACCGGAAAGACCATCACTTTGGAGGTCGAATCTTCA 99396
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | || | ||| ||||| |||| |||||||| |||||||| || || || |||||
Sbjct 99397 GACACAATCGACAATGTGAAGTCTAAGATTCAGGATAAGGAGGGTATCCCACCCGACCAA 99456
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584
||||| || ||||| || || |||||||| ||||||| || ||||| ||| ||||||||
Sbjct 99457 CAGCGCCTCATTTTCGCCGGCAAGCAACTTGAGGATGGCCGAACCCTCAGC-GACTATAA 99515
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||||||||| |||||||| | ||| | ||||| ||||||||
Sbjct 99516 CATCCAAAAGGAGAGTACTCTTCACTTGGTCCTTCGTCTCCGCGGTGG 99563
Score = 136 bits (150), Expect = 5e-27
Identities = 159/215 (74%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477
|||||||| | || || ||||| || || || ||||| ||||| |||| ||| |
Sbjct 99121 GTCAAGACTTTGACTGGTAAGACCATCACCCTCGAGGTGGAGTCTTCCGATACCATCGAC 99180
Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537
|| | || | || ||||||||||||||||| || || |||||||| ||||| || ||
Sbjct 99181 AACGTCAAATCGAAGATTCAGGACAAGGAGGGTATCCCACCAGACCAACAGCGCCTTATC 99240
Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597
|||||||| ||||| || ||||| | ||| || || | || || ||| |||| ||||||
Sbjct 99241 TTTGCTGGCAAGCAGCTTGAGGACGGTCGCACACTTTCCGATTACAATATCCAGAAGGAA 99300
Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||||||| || | || | || || || |||||
Sbjct 99301 TCCACTCTGCACTTGGTTCTCCGACTCCGTGGTGG 99335
Score = 136 bits (150), Expect = 5e-27
Identities = 171/232 (74%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||||| ||||| | || ||||||||||| || | || ||||||||
Sbjct 99565 ATGCAGATCTTTGTTAAGACTTTGACTGGCAAGACTATCACATTAGAAGTTGAGTCTTCG 99624
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | |||| ||| | ||| | || || ||||| |||||||| ||||| ||||| ||
Sbjct 99625 GACACGATTGATAATGTCAAGTCAAAGATCCAGGATAAGGAGGGTATTCCACCAGATCAA 99684
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584
||||| | || || || || ||||| | ||||||| ||||||||| ||| || || ||
Sbjct 99685 CAGCGATTGATCTTCGCAGGCAAGCAGTTGGAGGATGGTCGTACCCTCAGC-GATTACAA 99743
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAA 27636
| |||||||| |||| | || || || | |||||||| || ||||||
Sbjct 99744 CATTCAAAAGGAGAGCACTTTGCACCTGGTGCTTCGTCTTCGTGGAGGACAA 99795
Score = 127 bits (140), Expect = 2e-24
Identities = 150/203 (74%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489
||||| ||||| || || || ||||| ||||| || | || | || | |||
Sbjct 98849 ACCGGTAAGACCATCACCCTCGAGGTGGAGTCTTCGGACACTATCGACAACGTCAAGAGC 98908
Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549
|| ||||||||||||||||| ||||| |||||||| || || || || ||||| || |||
Sbjct 98909 AAGATTCAGGACAAGGAGGGCATTCCCCCAGACCAACAACGCCTTATCTTTGCCGGAAAG 98968
Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609
|| |||||||||| || ||||| | || || || |||| ||||| || ||||| ||
Sbjct 98969 CAGCTCGAGGATGGCCGCACCCTTTCCGATTACAACATCCAGAAGGAGTCGACTCTCCAC 99028
Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632
|| ||| | |||||||| || ||
Sbjct 99029 CTCGTCCTCCGTCTTCGTGGCGG 99051
>seq1113
Length=83002
Score = 125 bits (138), Expect = 8e-24
Identities = 137/182 (75%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 27414 CTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCAT 27473
||| |||||||| || || || ||||| || || || ||||| || || | || | ||
Sbjct 57186 CTTCGTCAAGACCCTCACGGGTAAGACCATCACCCTCGAGGTCGAATCTAGCGACACTAT 57127
Query 27474 TGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCT 27533
| ||| | ||| | || || |||||||||||||||||||| || ||||| |||||| |
Sbjct 57126 CGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCACCGGACCAACAGCGTTT 57067
Query 27534 AATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAA 27593
|| || ||||| |||||||| || |||| || || || |||| ||||| |||||||
Sbjct 57066 GATCTTCGCTGGAAAGCAACTTGAAGATGGACGCACTCTGTCAGATTATAACATCCAAAA 57007
Query 27594 GG 27595
||
Sbjct 57006 GG 57005
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570291929071920
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