Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19] 2,591 sequences; 63,226,382 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq2371 188 8e-43 seq2459 174 2e-38 seq778 174 2e-38 seq1113 125 8e-24 >seq2371 Length=131994 Score = 188 bits (208), Expect = 8e-43 Identities = 639/980 (65%), Gaps = 33/980 (3%) Strand=Plus/Minus Query 80782 GCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTA-ACAAC 80840 ||||| || | ||||| |||| ||||||| | ||||| ||| | || ||||| Sbjct 28354 GCCTCGGGCACAGGGTAGTAGTTGATATCGATAATCTTGTTCAAGTT-CTTGACGACAAC 28296 Query 80841 CCGTGTAACATCATGAAGTTTCTGAAAGTCG-AATTGG-----TTCCCCTTCACAAATGC 80894 | || || ||||| ||||| ||||| || ||| ||| | | ||| ||| Sbjct 28295 TTGGCAGACCTCGTGAAGCTTCTGGAAGTCATAAGTGGCAGTCTTCTCATCAACATATGT 28236 Query 80895 CGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAG---CATCTGTAAACTC 80951 || || ||| || |||| ||||| || || ||||| |||| || | ||| || Sbjct 28235 TGGGAGAGCCAGCGATGCCAAGTTGCAAACAGCAACCTCATCAGGTGCA-CAGTAT--TC 28179 Query 80952 GACGATTTCCGTGCACAAATTAGAAGACTTA--ATTGTACCCAGGTTTTTCTGGTTTGAC 81009 ||| ||||| || ||||| || || ||| || ||||| || || || ||||| | Sbjct 28178 GACAATTTCAGTACACAAGTTGGAG--CTTCGGATGGTACCAAGATTCTTTTGGTTGCTC 28121 Query 81010 TTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTG 81069 || ||||||||| |||||||| |||| | ||| | || |||||| || | || | Sbjct 28120 TTTCGGTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCAGTCTCGGTTTGAGCCTCG 28061 Query 81070 AGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACA 81129 ||||| | || ||||| || | ||||||| ||||||| ||||| || | | | Sbjct 28060 AGGATAGAGTACCAAAGCTTTTGGGCCTTGATGCTCTTGCGGCCCTTGCCCTCAGACTCG 28001 Query 81130 TACTTGGCGTAAGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCG 81189 || || |||| | ||||| | | |||||| | || | | | || ||||| Sbjct 28000 TATTTCTCGTACAAAGCCTCGAATTCGTCACCGTAGACGTCGGCCAAACCAGGACACTCA 27941 Query 81190 TTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGG 81249 ||||||||||||| |||||| || || || ||| ||||||||| || || Sbjct 27940 TTAGGGCACATCAATGTCCAGTCAAGGTTCTTTTCAACACGCTTCATGAAGAGATCTGGA 27881 Query 81250 ATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGC 81309 |||||||||||| ||| || || ||| || ||||||| | || ||||| || Sbjct 27880 ATCCAGAGGGCGTAGAAAAGATCACGGGCACGAACCTCCTCCTTTCCGTGGTTCTTTCGG 27821 Query 81310 AACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCG-AC-- 81366 | ||||| || || | | || || ||||||||||| || || | ||||| | || Sbjct 27820 AGGTCGAGGAACTCGAAAACATCGGCGTGCCATGGCTCGAGGTAGATGGCGAAAGCACCA 27761 Query 81367 ---CCCTTGCGACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAAC 81423 | |||| | ||||| || | || || || || || ||| || || || | | Sbjct 27760 GGTCGCTTGTTA---CCACCTTGATCAACATATCGAGCGGTGTTGTTGAAAACCCGAAGC 27704 Query 81424 ATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGC 81483 ||||| | ||| || | || | ||||| ||||| | || | || ||||||| Sbjct 27703 ATAGGAACGATTCCGTTGGAGTTTCCGTTTGTACCGGCAATGTAAGCACCAGTGGCGCGG 27644 Query 81484 A--CCTTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGT 81541 | | || |||| || ||||| ||||||| |||||||||| ||||| | Sbjct 27643 ATTCTGTGAACATTG--AGTCCGATACCACCTGCGTTCTTTGAAATCATGGCACAAATCT 27586 Query 81542 TCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTG 81601 ||| || || || || || || ||||| || | |||||||| | | ||| || | Sbjct 27585 TCAAAGTGTCGTAGATACCATCAATGCTGTCCTCCTTCATGTCGATGAGGAAGCATGAAG 27526 Query 81602 ACATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAAC 81661 | | || | | || || ||| || |||||||| | ||||| |||| || Sbjct 27525 AAAGTTGTGCCTGTGGTGTACCAGCAGCAAAAAGTGTTGGTGAGGCGTGGGTGAAGTACT 27466 Query 81662 GGTTTGACATCAGGTCATAGGTTTCCTTGAC-GCGTGGAATATCGTCACCGTGAATACCG 81720 | | ||||||| || || ||||| || | || | |||||| || ||||| || ||| Sbjct 27465 TGCTGGACATCAAGTTGTAAGTTTCGATGGCAGCCT-CAATATCCTCGCCGTGTATTCCG 27407 Query 81721 ATAGCTACACGCATAAACAT 81740 | ||| |||||||| | ||| Sbjct 27406 ACAGCGACACGCATGATCAT 27387 >seq2459 Length=125150 Score = 174 bits (192), Expect = 2e-38 Identities = 161/204 (79%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 || |||||||| || || |||||||||||||| || | ||| | ||| | ||| | Sbjct 17381 ACGGGCAAGACCATCACCCTTGAGGTTGAGTCCTCGGACACCATCGACAATGTCAAGTCC 17322 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || |||||||||||||||||||| || ||||| |||||| | || |||||||| ||| Sbjct 17321 AAGATCCAGGACAAGGAGGGAATTCCACCGGACCAACAGCGTTTGATCTTTGCTGGAAAG 17262 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 ||||| ||||||| ||||||||| | ||||| || |||| ||||| || || |||||| Sbjct 17261 CAACTTGAGGATGGTCGTACCCTTTCGGACTACAACATCCAGAAGGAGTCGACCCTTCAT 17202 Query 27610 CTAGTCTTGCGTCTTCGCGGTGGA 27633 || ||||| ||||| || || ||| Sbjct 17201 CTCGTCTTACGTCTACGTGGAGGA 17178 >seq778 Length=242110 Score = 174 bits (192), Expect = 2e-38 Identities = 177/228 (78%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| |||||||| ||||| || ||| | ||||| || || Sbjct 99337 ATGCAAATCTTCGTCAAGACTCTTACCGGAAAGACCATCACTTTGGAGGTCGAATCTTCA 99396 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| ||||| |||| |||||||| |||||||| || || || ||||| Sbjct 99397 GACACAATCGACAATGTGAAGTCTAAGATTCAGGATAAGGAGGGTATCCCACCCGACCAA 99456 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 ||||| || ||||| || || |||||||| ||||||| || ||||| ||| |||||||| Sbjct 99457 CAGCGCCTCATTTTCGCCGGCAAGCAACTTGAGGATGGCCGAACCCTCAGC-GACTATAA 99515 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||||| |||||||| | ||| | ||||| |||||||| Sbjct 99516 CATCCAAAAGGAGAGTACTCTTCACTTGGTCCTTCGTCTCCGCGGTGG 99563 Score = 136 bits (150), Expect = 5e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 |||||||| | || || ||||| || || || ||||| ||||| |||| ||| | Sbjct 99121 GTCAAGACTTTGACTGGTAAGACCATCACCCTCGAGGTGGAGTCTTCCGATACCATCGAC 99180 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 || | || | || ||||||||||||||||| || || |||||||| ||||| || || Sbjct 99181 AACGTCAAATCGAAGATTCAGGACAAGGAGGGTATCCCACCAGACCAACAGCGCCTTATC 99240 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 |||||||| ||||| || ||||| | ||| || || | || || ||| |||| |||||| Sbjct 99241 TTTGCTGGCAAGCAGCTTGAGGACGGTCGCACACTTTCCGATTACAATATCCAGAAGGAA 99300 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||| || | || | || || || ||||| Sbjct 99301 TCCACTCTGCACTTGGTTCTCCGACTCCGTGGTGG 99335 Score = 136 bits (150), Expect = 5e-27 Identities = 171/232 (74%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| | || ||||||||||| || | || |||||||| Sbjct 99565 ATGCAGATCTTTGTTAAGACTTTGACTGGCAAGACTATCACATTAGAAGTTGAGTCTTCG 99624 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| ||| | ||| | || || ||||| |||||||| ||||| ||||| || Sbjct 99625 GACACGATTGATAATGTCAAGTCAAAGATCCAGGATAAGGAGGGTATTCCACCAGATCAA 99684 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 ||||| | || || || || ||||| | ||||||| ||||||||| ||| || || || Sbjct 99685 CAGCGATTGATCTTCGCAGGCAAGCAGTTGGAGGATGGTCGTACCCTCAGC-GATTACAA 99743 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAA 27636 | |||||||| |||| | || || || | |||||||| || |||||| Sbjct 99744 CATTCAAAAGGAGAGCACTTTGCACCTGGTGCTTCGTCTTCGTGGAGGACAA 99795 Score = 127 bits (140), Expect = 2e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 ||||| ||||| || || || ||||| ||||| || | || | || | ||| Sbjct 98849 ACCGGTAAGACCATCACCCTCGAGGTGGAGTCTTCGGACACTATCGACAACGTCAAGAGC 98908 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || ||||||||||||||||| ||||| |||||||| || || || || ||||| || ||| Sbjct 98909 AAGATTCAGGACAAGGAGGGCATTCCCCCAGACCAACAACGCCTTATCTTTGCCGGAAAG 98968 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || |||||||||| || ||||| | || || || |||| ||||| || ||||| || Sbjct 98969 CAGCTCGAGGATGGCCGCACCCTTTCCGATTACAACATCCAGAAGGAGTCGACTCTCCAC 99028 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 || ||| | |||||||| || || Sbjct 99029 CTCGTCCTCCGTCTTCGTGGCGG 99051 >seq1113 Length=83002 Score = 125 bits (138), Expect = 8e-24 Identities = 137/182 (75%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 27414 CTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCAT 27473 ||| |||||||| || || || ||||| || || || ||||| || || | || | || Sbjct 57186 CTTCGTCAAGACCCTCACGGGTAAGACCATCACCCTCGAGGTCGAATCTAGCGACACTAT 57127 Query 27474 TGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCT 27533 | ||| | ||| | || || |||||||||||||||||||| || ||||| |||||| | Sbjct 57126 CGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCACCGGACCAACAGCGTTT 57067 Query 27534 AATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAA 27593 || || ||||| |||||||| || |||| || || || |||| ||||| ||||||| Sbjct 57066 GATCTTCGCTGGAAAGCAACTTGAAGATGGACGCACTCTGTCAGATTATAACATCCAAAA 57007 Query 27594 GG 27595 || Sbjct 57006 GG 57005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570291929071920