Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19] 2,591 sequences; 63,226,382 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq1113 105 4e-18 seq2459 102 5e-17 seq778 93.3 3e-14 >seq1113 Length=83002 Score = 105 bits (116), Expect = 4e-18 Identities = 87/106 (82%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 34517 CCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATA 34576 ||||||| |||||||||||||| || || || | ||||||||||| || || || || | Sbjct 57005 CCTTTTGGATGTTATAATCTGACAGAGTGCGTCCATCTTCAAGTTGCTTTCCAGCGAAGA 57064 Query 34577 TTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622 | ||||||||||||||||| || | |||||||||||| |||||| Sbjct 57065 TCAAACGCTGTTGGTCCGGTGGAATTCCCTCCTTGTCCTGGATCTT 57110 >seq2459 Length=125150 Score = 102 bits (112), Expect = 5e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| || || | ||| || || |||||| || ||||| || || ||||| || || Sbjct 17188 AGACGTAAGACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGA 17247 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || |||||||| || || ||||| || ||||||||||||||||| || | ||||||| Sbjct 17248 CCATCCTCAAGTTGCTTTCCAGCAAAGATCAAACGCTGTTGGTCCGGTGGAATTCCCTCC 17307 Query 34609 TTGTCTGTGATCTT 34622 ||||| |||||| Sbjct 17308 TTGTCCTGGATCTT 17321 >seq778 Length=242110 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | ||||| || | ||||||||||||||||||||| ||||| Sbjct 99791 CCTCCACGAAGACGAAGCACCAGGTGCAAAGTGCTCTCCTTTTGAATGTTGTAATCGCTG 99732 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || || | || || || || || || || |||||||| || || || Sbjct 99731 AGGGTACGACCATCCTCCAACTGCTTGCCTGCGAAGATCAATCGCTGTTGATCTGGTGGA 99672 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCAC 34658 | |||||||| || |||| |||| || || || ||| ||||| ||| || Sbjct 99671 ATACCCTCCTTATCCTGGATC-TTTGACTTGACATTATCAATCGTGTCCGAAGACTCAAC 99613 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | || || || || || || || || || ||||| |||||||| Sbjct 99612 TTCTAATGTGATAGTCTTGCCAGTCAAAGTCTTAACAAAGATCTGCAT 99565 Score = 91.5 bits (100), Expect = 9e-14 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| || ||||| ||||||||||| |||||||| || || ||||| Sbjct 99554 AGACGAAGGACCAAGTGAAGAGTACTCTCCTTTTGGATGTTATAGTCGCTGAGGGTTCGG 99495 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || |||||||| || ||||| || || | ||||||||||| || || | |||||| Sbjct 99494 CCATCCTCAAGTTGCTTGCCGGCGAAAATGAGGCGCTGTTGGTCGGGTGGGATACCCTCC 99435 Query 34609 TTGTC 34613 || || Sbjct 99434 TTATC 99430 Score = 87.8 bits (96), Expect = 1e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 ||||| || |||||| ||||| || || || ||||| |||||||| || |||| ||| Sbjct 99317 ACCAAGTGCAGAGTGGATTCCTTCTGGATATTGTAATCGGAAAGTGTGCGACCGTCCTCA 99258 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTC 34613 || || || || ||||| || | ||||||||||| || || | ||||||||||| Sbjct 99257 AGCTGCTTGCCAGCAAAGATAAGGCGCTGTTGGTCTGGTGGGATACCCTCCTTGTC 99202 Score = 84.2 bits (92), Expect = 1e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | |||||| | || | |||||||| |||||| || ||||| ||||| ||| Sbjct 99051 CCGCCACGAAGACGGAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCGGAA 98992 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || || || || || |||||||| || | || |||||||| || || Sbjct 98991 AGGGTGCGGCCATCCTCGAGCTGCTTTCCGGCAAAGATAAGGCGTTGTTGGTCTGGGGGA 98932 Query 34600 ACTCCCTCCTTGTC 34613 | ||||||||||| Sbjct 98931 ATGCCCTCCTTGTC 98918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314719661527703