Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19]
2,591 sequences; 63,226,382 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq778 131 1e-25
seq2459 96.9 3e-15
>seq778
Length=242110
Score = 131 bits (144), Expect = 1e-25
Identities = 144/192 (75%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| ||||| || ||| |||| |||||| |||| || | ||||| || | ||
Sbjct 99565 ATGCAGATCTTTGTTAAGACTTTGACTGGCAAGACTATCACATTAGAAGTTGAGTCTTCG 99624
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| ||||||| | ||||| ||| || || || || || || || ||||| ||||||
Sbjct 99625 GACACGATTGATAATGTCAAGTCAAAGATCCAGGATAAGGAGGGTATTCCACCAGATCAA 99684
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||||| || || | ||| ||||| || ||||| || || ||| | ||||||||||
Sbjct 99685 CAGCGATTGATCTTCGCAGGCAAGCAGTTGGAGGATGGTCGTACCCTCAGCGATTACAAC 99744
Query 27168 ATTCAAAAGGAG 27179
||||||||||||
Sbjct 99745 ATTCAAAAGGAG 99756
Score = 96.9 bits (106), Expect = 3e-15
Identities = 152/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 27000 GTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAG 27059
|| || ||| |||| || ||| | || || || || ||||| | ||||| | || ||
Sbjct 99121 GTCAAGACTTTGACTGGTAAGACCATCACCCTCGAGGTGGAGTCTTCCGATACCATCGAC 99180
Query 27060 ATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATA 27119
| |||||| || ||||| ||||| || || || ||||| || |||||||| | ||
Sbjct 99181 AACGTCAAATCGAAGATTCAGGACAAGGAGGGTATCCCACCAGACCAACAGCGCCTTATC 99240
Query 27120 TACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAG 27179
| || ||||| || | || ||| || || ||||||||||||| || || |||||
Sbjct 99241 TTTGCTGGCAAGCAGCTTGAGGACGGTCGCACACTTTCCGATTACAATATCCAGAAGGAA 99300
Query 27180 TCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|| || | || |||||| | || | || ||||| ||
Sbjct 99301 TCCACTCTGCACTTGGTTCTCCGACTCCGTGGTGGTAT 99338
Score = 82.4 bits (90), Expect = 7e-11
Identities = 122/173 (71%), Gaps = 0/173 (0%)
Strand=Plus/Plus
Query 27012 ACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAA 27071
||||| ||| | || || || || ||||| | || ||| | || || | |||||
Sbjct 98849 ACCGGTAAGACCATCACCCTCGAGGTGGAGTCTTCGGACACTATCGACAACGTCAAGAGC 98908
Query 27072 AAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAA 27131
|| ||||| ||||| || ||||| || || || ||||| || | || | ||||| ||
Sbjct 98909 AAGATTCAGGACAAGGAGGGCATTCCCCCAGACCAACAACGCCTTATCTTTGCCGGAAAG 98968
Query 27132 CAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGAC 27184
|| | || || | ||| |||||||||||||||| || |||||||||||
Sbjct 98969 CAGCTCGAGGATGGCCGCACCCTTTCCGATTACAACATCCAGAAGGAGTCGAC 99021
>seq2459
Length=125150
Score = 96.9 bits (106), Expect = 3e-15
Identities = 143/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 27012 ACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAA 27071
|| |||||| | || || ||||| || || | || ||| | || || | |||||
Sbjct 17381 ACGGGCAAGACCATCACCCTTGAGGTTGAGTCCTCGGACACCATCGACAATGTCAAGTCC 17322
Query 27072 AAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAA 27131
|| || || ||||| || || || ||||| || ||||||||||| || | || || ||
Sbjct 17321 AAGATCCAGGACAAGGAGGGAATTCCACCGGACCAACAGCGTTTGATCTTTGCTGGAAAG 17262
Query 27132 CAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACAT 27191
||| | || || || ||| |||| || |||||||| || |||||||||||| | |||
Sbjct 17261 CAACTTGAGGATGGTCGTACCCTTTCGGACTACAACATCCAGAAGGAGTCGACCCTTCAT 17202
Query 27192 TTGGTTTTGCGTTTGCGGGGTGG 27214
| || || ||| | || || ||
Sbjct 17201 CTCGTCTTACGTCTACGTGGAGG 17179
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434904314080320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |