Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19]
2,591 sequences; 63,226,382 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq778 172 1e-37
seq2459 159 8e-34
seq1113 149 1e-30
seq2371 100 7e-16
seq2481 86.0 1e-11
>seq778
Length=242110
Score = 172 bits (190), Expect = 1e-37
Identities = 158/200 (79%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||| | ||||| ||||| ||||| ||||| || |||||||| ||||| | ||||||
Sbjct 99046 ACGAAGACGGAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCGGAAAGGGT 98987
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| ||||| || |||||||| || || |||||||||||||||||||| || |||| ||
Sbjct 98986 GCGGCCATCCTCGAGCTGCTTTCCGGCAAAGATAAGGCGTTGTTGGTCTGGGGGAATGCC 98927
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
||||||||||| ||||| || ||||| ||||| ||||| || || ||||||||
Sbjct 98926 CTCCTTGTCCTGAATCTTGCTCTTGACGTTGTCGATAGTGTCCGAAGACTCCACCTCGAG 98867
Query 211073 AGTGATCGTCTTTCCCGTGA 211092
||||| ||||| || ||||
Sbjct 98866 GGTGATGGTCTTACCGGTGA 98847
Score = 154 bits (170), Expect = 3e-32
Identities = 160/210 (76%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
||| |||| || || | ||| |||||||| || || ||||| || ||||| | ||| ||
Sbjct 99330 ACGGAGTCGGAGAACCAAGTGCAGAGTGGATTCCTTCTGGATATTGTAATCGGAAAGTGT 99271
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| || || || ||||||||||| || ||||||||||| |||||||| || || | ||
Sbjct 99270 GCGACCGTCCTCAAGCTGCTTGCCAGCAAAGATAAGGCGCTGTTGGTCTGGTGGGATACC 99211
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
||||||||||| ||||| ||| ||||| |||||||| || || || ||||||||
Sbjct 99210 CTCCTTGTCCTGAATCTTCGATTTGACGTTGTCGATGGTATCGGAAGACTCCACCTCGAG 99151
Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTAC 211102
||||| ||||| || || | |||||| ||
Sbjct 99150 GGTGATGGTCTTACCAGTCAAAGTCTTGAC 99121
Score = 152 bits (168), Expect = 1e-31
Identities = 161/212 (76%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| | ||||||||| ||| |||||||||||||| || ||||| | |||||
Sbjct 99548 AGGACCAAGTGAAGAGTACTCTCCTTTTGGATGTTATAGTCGCTGAGGGTTCGGCCATCC 99489
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| || |||||||| ||||| || ||||| |||||||| || || | || ||||| |||
Sbjct 99488 TCAAGTTGCTTGCCGGCGAAAATGAGGCGCTGTTGGTCGGGTGGGATACCCTCCTTATCC 99429
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|| ||||| ||||| || ||||| ||||| || ||| ||||| | |||||| |||
Sbjct 99428 TGAATCTTAGACTTCACATTGTCGATTGTGTCTGAAGATTCGACCTCCAAAGTGATGGTC 99369
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||||| || |||||||| || || | |||||
Sbjct 99368 TTTCCGGTAAGAGTCTTGACGAAGATTTGCAT 99337
Score = 145 bits (160), Expect = 2e-29
Identities = 167/225 (74%), Gaps = 0/225 (0%)
Strand=Plus/Minus
Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949
|| |||||| | || || ||||| | |||| ||| ||||| ||||| ||||| ||
Sbjct 99789 TCCACGAAGACGAAGCACCAGGTGCAAAGTGCTCTCCTTTTGAATGTTGTAATCGCTGAG 99730
Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009
||| | ||||| |||| |||||||||||||||||| | || ||||| || || ||||
Sbjct 99729 GGTACGACCATCCTCCAACTGCTTGCCTGCGAAGATCAATCGCTGTTGATCTGGTGGAAT 99670
Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069
|| ||||| |||||||||||| || || || || || ||||| || ||||| ||
Sbjct 99669 ACCCTCCTTATCCTGGATCTTTGACTTGACATTATCAATCGTGTCCGAAGACTCAACTTC 99610
Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
| ||||| ||||| || || | |||||| ||||| | ||||||
Sbjct 99609 TAATGTGATAGTCTTGCCAGTCAAAGTCTTAACAAAGATCTGCAT 99565
>seq2459
Length=125150
Score = 159 bits (176), Expect = 8e-34
Identities = 157/203 (77%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949
|| ||| || | || ||| || ||||| || ||||| || |||||||| || |||| |||
Sbjct 17181 TCCACGTAGACGTAAGACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAG 17240
Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009
||| | ||||| || || ||||| || || ||||| | || |||||||| || ||||
Sbjct 17241 GGTACGACCATCCTCAAGTTGCTTTCCAGCAAAGATCAAACGCTGTTGGTCCGGTGGAAT 17300
Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069
||| ||||||||||||||||| || || || ||||||||||| ||| ||||||||
Sbjct 17301 TCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCCGAGGACTCAACCTC 17360
Query 211070 GAGAGTGATCGTCTTTCCCGTGA 211092
|| ||||| ||||| |||||||
Sbjct 17361 AAGGGTGATGGTCTTGCCCGTGA 17383
>seq1113
Length=83002
Score = 149 bits (164), Expect = 1e-30
Identities = 143/182 (79%), Gaps = 6/182 (3%)
Strand=Plus/Plus
Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986
||||||||||||||||| | || || | ||||||||| || ||||| || ||||||||
Sbjct 57007 TTTTGGATGTTATAATCTGACAGAGTGCGTCCATCTTCAAGTTGCTTTCCAGCGAAGATC 57066
Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046
| || |||||||| || |||| ||| ||||||||||||||||| || || || |||
Sbjct 57067 AAACGCTGTTGGTCCGGTGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 57126
Query 211047 ATGGTGTC---AGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACA 211103
|| ||||| ||| ||| |||||||| ||||| ||||| |||||||| ||||| ||
Sbjct 57127 ATAGTGTCGCTAGA---TTCGACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTGACG 57183
Query 211104 AA 211105
||
Sbjct 57184 AA 57185
>seq2371
Length=131994
Score = 100 bits (110), Expect = 7e-16
Identities = 196/285 (69%), Gaps = 10/285 (4%)
Strand=Plus/Minus
Query 178088 CCAAAGTTCTTTTGGTTGCTCTTTC---TGCAAATGGCATCTTTGTACGCAATGAAGGGC 178144
|||| ||||||||||||||||||| ||||| ||||| ||||| ||||| ||
Sbjct 28141 CCAAGATTCTTTTGGTTGCTCTTTCGGTTGCAA---GCATCCTTGTAAAGCATGAAAGGG 28085
Query 178145 ATTCCCACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTC 178204
|||| ||| | ||||||| |||| || | |||||||| ||||| || ||
Sbjct 28084 TTTCCAGTCTCGGTTTGAGCCTCGAGGATAGAGTACCAAAGCTTTTGGGCCTTGATGCTC 28025
Query 178205 TTTTTGGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAG 178264
|| | | || || ||| |||||| || | ||| | |||||||||| || |||
Sbjct 28024 TTGCGGCCCTTGCCCTCAGACTCGTATTTCTCGTACAAAGCCTCGAATTCGTCACCGTAG 27965
Query 178265 ACATCATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCG-TCTTCCTT 178323
|| || | | ||| ||| |||||| ||||| | | |||| | | | |||| ||
Sbjct 27964 ACGTCGGCCAAACCAGGACACTCATTAGGGCACATCAATGTCCAGTCAAGGTTCTT--TT 27907
Query 178324 C-ACTCGTTTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAAAA 178367
| || || ||||||||||| || | |||||| ||| |||||||
Sbjct 27906 CAACACGCTTCATGAAGAGATCTGGAATCCAGAGGGCGTAGAAAA 27862
>seq2481
Length=279592
Score = 86.0 bits (94), Expect = 1e-11
Identities = 124/175 (71%), Gaps = 0/175 (0%)
Strand=Plus/Minus
Query 139807 CTTCCAAAGAAGCACGGAAGAGGAGGACAATCTGCTCTGCGTTTTGAAAGACTTCGAAAG 139866
|| || ||||||||||| | || ||||||||||| || ||||| | | | ||||| ||
Sbjct 39694 CTCCCCAAGAAGCACGGTCGTGGTGGACAATCTGCCCTTCGTTTCGCACGTCTTCGTGAG 39635
Query 139867 GAAAAGAGGCACAACTACTTGAGAAAAGTTGCAGAGAACGCAATACAGTGTTTTATCAAA 139926
|||||| | ||||| || | |||| ||||| ||| || | || ||||||||
Sbjct 39634 GAAAAGCGACACAATTATGTCCGAAAGGTTGCTGAGTTGGCTGTGCAAAATTTTATCACT 39575
Query 139927 GACAACAAGTGTTTTGTTTCTGGTATTGTTTTGGCAGGTTCCGCAGAGTTCAAGA 139981
| ||||| || | |||||| || | || ||||||||||| |||||||
Sbjct 39574 GCTGACAAGGTCAACGTGGCCGGTATTATTCTTGCTGGTTCCGCAGATTTCAAGA 39520
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159113519413715
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |