Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19] 2,591 sequences; 63,226,382 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq778 172 1e-37 seq2459 159 8e-34 seq1113 149 1e-30 seq2371 100 7e-16 seq2481 86.0 1e-11 >seq778 Length=242110 Score = 172 bits (190), Expect = 1e-37 Identities = 158/200 (79%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | ||||| ||||| ||||| ||||| || |||||||| ||||| | |||||| Sbjct 99046 ACGAAGACGGAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCGGAAAGGGT 98987 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| || |||||||| || || |||||||||||||||||||| || |||| || Sbjct 98986 GCGGCCATCCTCGAGCTGCTTTCCGGCAAAGATAAGGCGTTGTTGGTCTGGGGGAATGCC 98927 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||| ||||| || ||||| ||||| ||||| || || |||||||| Sbjct 98926 CTCCTTGTCCTGAATCTTGCTCTTGACGTTGTCGATAGTGTCCGAAGACTCCACCTCGAG 98867 Query 211073 AGTGATCGTCTTTCCCGTGA 211092 ||||| ||||| || |||| Sbjct 98866 GGTGATGGTCTTACCGGTGA 98847 Score = 154 bits (170), Expect = 3e-32 Identities = 160/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| |||| || || | ||| |||||||| || || ||||| || ||||| | ||| || Sbjct 99330 ACGGAGTCGGAGAACCAAGTGCAGAGTGGATTCCTTCTGGATATTGTAATCGGAAAGTGT 99271 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || || || ||||||||||| || ||||||||||| |||||||| || || | || Sbjct 99270 GCGACCGTCCTCAAGCTGCTTGCCAGCAAAGATAAGGCGCTGTTGGTCTGGTGGGATACC 99211 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||| ||||| ||| ||||| |||||||| || || || |||||||| Sbjct 99210 CTCCTTGTCCTGAATCTTCGATTTGACGTTGTCGATGGTATCGGAAGACTCCACCTCGAG 99151 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTAC 211102 ||||| ||||| || || | |||||| || Sbjct 99150 GGTGATGGTCTTACCAGTCAAAGTCTTGAC 99121 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | ||||||||| ||| |||||||||||||| || ||||| | ||||| Sbjct 99548 AGGACCAAGTGAAGAGTACTCTCCTTTTGGATGTTATAGTCGCTGAGGGTTCGGCCATCC 99489 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || |||||||| ||||| || ||||| |||||||| || || | || ||||| ||| Sbjct 99488 TCAAGTTGCTTGCCGGCGAAAATGAGGCGCTGTTGGTCGGGTGGGATACCCTCCTTATCC 99429 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| ||||| || ||||| ||||| || ||| ||||| | |||||| ||| Sbjct 99428 TGAATCTTAGACTTCACATTGTCGATTGTGTCTGAAGATTCGACCTCCAAAGTGATGGTC 99369 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || |||||||| || || | ||||| Sbjct 99368 TTTCCGGTAAGAGTCTTGACGAAGATTTGCAT 99337 Score = 145 bits (160), Expect = 2e-29 Identities = 167/225 (74%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || |||||| | || || ||||| | |||| ||| ||||| ||||| ||||| || Sbjct 99789 TCCACGAAGACGAAGCACCAGGTGCAAAGTGCTCTCCTTTTGAATGTTGTAATCGCTGAG 99730 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 ||| | ||||| |||| |||||||||||||||||| | || ||||| || || |||| Sbjct 99729 GGTACGACCATCCTCCAACTGCTTGCCTGCGAAGATCAATCGCTGTTGATCTGGTGGAAT 99670 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 || ||||| |||||||||||| || || || || || ||||| || ||||| || Sbjct 99669 ACCCTCCTTATCCTGGATCTTTGACTTGACATTATCAATCGTGTCCGAAGACTCAACTTC 99610 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 | ||||| ||||| || || | |||||| ||||| | |||||| Sbjct 99609 TAATGTGATAGTCTTGCCAGTCAAAGTCTTAACAAAGATCTGCAT 99565 >seq2459 Length=125150 Score = 159 bits (176), Expect = 8e-34 Identities = 157/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | || ||| || ||||| || ||||| || |||||||| || |||| ||| Sbjct 17181 TCCACGTAGACGTAAGACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAG 17240 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 ||| | ||||| || || ||||| || || ||||| | || |||||||| || |||| Sbjct 17241 GGTACGACCATCCTCAAGTTGCTTTCCAGCAAAGATCAAACGCTGTTGGTCCGGTGGAAT 17300 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 ||| ||||||||||||||||| || || || ||||||||||| ||| |||||||| Sbjct 17301 TCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCCGAGGACTCAACCTC 17360 Query 211070 GAGAGTGATCGTCTTTCCCGTGA 211092 || ||||| ||||| ||||||| Sbjct 17361 AAGGGTGATGGTCTTGCCCGTGA 17383 >seq1113 Length=83002 Score = 149 bits (164), Expect = 1e-30 Identities = 143/182 (79%), Gaps = 6/182 (3%) Strand=Plus/Plus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 ||||||||||||||||| | || || | ||||||||| || ||||| || |||||||| Sbjct 57007 TTTTGGATGTTATAATCTGACAGAGTGCGTCCATCTTCAAGTTGCTTTCCAGCGAAGATC 57066 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 | || |||||||| || |||| ||| ||||||||||||||||| || || || ||| Sbjct 57067 AAACGCTGTTGGTCCGGTGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 57126 Query 211047 ATGGTGTC---AGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACA 211103 || ||||| ||| ||| |||||||| ||||| ||||| |||||||| ||||| || Sbjct 57127 ATAGTGTCGCTAGA---TTCGACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTGACG 57183 Query 211104 AA 211105 || Sbjct 57184 AA 57185 >seq2371 Length=131994 Score = 100 bits (110), Expect = 7e-16 Identities = 196/285 (69%), Gaps = 10/285 (4%) Strand=Plus/Minus Query 178088 CCAAAGTTCTTTTGGTTGCTCTTTC---TGCAAATGGCATCTTTGTACGCAATGAAGGGC 178144 |||| ||||||||||||||||||| ||||| ||||| ||||| ||||| || Sbjct 28141 CCAAGATTCTTTTGGTTGCTCTTTCGGTTGCAA---GCATCCTTGTAAAGCATGAAAGGG 28085 Query 178145 ATTCCCACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTC 178204 |||| ||| | ||||||| |||| || | |||||||| ||||| || || Sbjct 28084 TTTCCAGTCTCGGTTTGAGCCTCGAGGATAGAGTACCAAAGCTTTTGGGCCTTGATGCTC 28025 Query 178205 TTTTTGGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAG 178264 || | | || || ||| |||||| || | ||| | |||||||||| || ||| Sbjct 28024 TTGCGGCCCTTGCCCTCAGACTCGTATTTCTCGTACAAAGCCTCGAATTCGTCACCGTAG 27965 Query 178265 ACATCATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCG-TCTTCCTT 178323 || || | | ||| ||| |||||| ||||| | | |||| | | | |||| || Sbjct 27964 ACGTCGGCCAAACCAGGACACTCATTAGGGCACATCAATGTCCAGTCAAGGTTCTT--TT 27907 Query 178324 C-ACTCGTTTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAAAA 178367 | || || ||||||||||| || | |||||| ||| ||||||| Sbjct 27906 CAACACGCTTCATGAAGAGATCTGGAATCCAGAGGGCGTAGAAAA 27862 >seq2481 Length=279592 Score = 86.0 bits (94), Expect = 1e-11 Identities = 124/175 (71%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 139807 CTTCCAAAGAAGCACGGAAGAGGAGGACAATCTGCTCTGCGTTTTGAAAGACTTCGAAAG 139866 || || ||||||||||| | || ||||||||||| || ||||| | | | ||||| || Sbjct 39694 CTCCCCAAGAAGCACGGTCGTGGTGGACAATCTGCCCTTCGTTTCGCACGTCTTCGTGAG 39635 Query 139867 GAAAAGAGGCACAACTACTTGAGAAAAGTTGCAGAGAACGCAATACAGTGTTTTATCAAA 139926 |||||| | ||||| || | |||| ||||| ||| || | || |||||||| Sbjct 39634 GAAAAGCGACACAATTATGTCCGAAAGGTTGCTGAGTTGGCTGTGCAAAATTTTATCACT 39575 Query 139927 GACAACAAGTGTTTTGTTTCTGGTATTGTTTTGGCAGGTTCCGCAGAGTTCAAGA 139981 | ||||| || | |||||| || | || ||||||||||| ||||||| Sbjct 39574 GCTGACAAGGTCAACGTGGCCGGTATTATTCTTGCTGGTTCCGCAGATTTCAAGA 39520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159113519413715