Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19] 2,591 sequences; 63,226,382 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq778 100 2e-16 seq1113 93.3 3e-14 >seq778 Length=242110 Score = 100 bits (110), Expect = 2e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || ||||| || | || || || || ||||| | |||||||| || || Sbjct 99565 ATGCAGATCTTTGTTAAGACTTTGACTGGCAAGACTATCACATTAGAAGTTGAGTCTTCG 99624 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || |||| | | || || || ||| | || |||||||| Sbjct 99625 GACACGATTGATAATGTCAAGTCAAAGA-TCCAGGATAAGGAGGGTATTCCACCAGATCA 99683 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| || || || || ||||| || |||| || | || || | |||||||||| Sbjct 99684 ACAGCGATTGATCTTCGCAGGCAAGCAGTTGGAGGATGGTCGTACCCTCAGCGATTACAA 99743 Query 23790 CATACAAAAAGAGTCCACATTACA 23813 ||| ||||| ||| ||| || || Sbjct 99744 CATTCAAAAGGAGAGCACTTTGCA 99767 >seq1113 Length=83002 Score = 93.3 bits (102), Expect = 3e-14 Identities = 130/180 (72%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 23620 TTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTT 23679 ||||| || ||||||||||| || || ||||| ||||| || || || | |||||| | Sbjct 57185 TTCGTCAAGACCCTCACGGGTAAGACCATCACCCTCGAGGTCGAATCTAGCGACACTATC 57126 Query 23680 GA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTT 23738 || ||| | || | || | | ||||| || || | || || || ||||||||||| Sbjct 57125 GACAATGTCAAGTCCAAGA-TCCAGGACAAGGAGGGAATTCCACCGGACCAACAGCGTTT 57067 Query 23739 AATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAA 23798 || || || || || ||||| ||||| | ||||||| | ||||| ||||| ||||| Sbjct 57066 GATCTTCGCTGGAAAGCAACTTGAAGATGGACGCACTCTGTCAGATTATAACATCCAAAA 57007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337998926396228