Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19]
2,591 sequences; 63,226,382 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq1906 149 1e-30
seq778 140 8e-28
seq2459 114 3e-20
seq1113 111 4e-19
>seq1906
Length=51260
Score = 149 bits (164), Expect = 1e-30
Identities = 210/289 (73%), Gaps = 7/289 (2%)
Strand=Plus/Minus
Query 7441 ACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGG-TACTATATTTTCTATGAT 7499
|| |||||||||||||||| | |||||||| ||||| || ||| |||||| | |
Sbjct 48852 ACATTATATTTAATATTTGCTTTATTTTCTGG-ATTATTGGGTACAGCTTTTTCTGTTCT 48794
Query 7500 TATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAA-ATATTGAGTGGTAATAGCCAACTTT 7558
|||||| ||||||||| | || ||| |||| |||||| | |||| ||||| |
Sbjct 48793 TATAAGATTAGAATTAAGCGGACCTGGTGTTCAATATATTGCA-GATAAT---CAACTAT 48738
Query 7559 ACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTA 7618
| || | ||| || || || || || | | ||||| |||||| | || ||||| | |
Sbjct 48737 ATAATGCTATCATAACTGCCCACGCTATATTAATGATATTCTTTATGGTCATGCCAGCTT 48678
Query 7619 TGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTT 7678
| ||||| || |||||||| | || || || ||| | | || | ||| |||||||| |
Sbjct 48677 TAATAGGAGGATTCGGAAACTTTTTAGTACCATTATTAGTAGGGGGTCCAGATATGGCAT 48618
Query 7679 TTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATT 7727
| ||||| ||||| ||||||||||| |||||| |||| ||| |||||
Sbjct 48617 TCCCAAGACTTAATAATATAAGTTTCTGATTATTACCACCTAGTTTATT 48569
>seq778
Length=242110
Score = 140 bits (154), Expect = 8e-28
Identities = 155/207 (75%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
||| |||| || || | ||| ||||||||||| || |||| ||||||||||| | ||
Sbjct 99330 ACGGAGTCGGAGAACCAAGTGCAGAGTGGATTCCTTCTGGATATTGTAATCGGAAAGTGT 99271
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| || || || |||||||| ||||| |||||||| || |||||||| || || |||||
Sbjct 99270 GCGACCGTCCTCAAGCTGCTTGCCAGCAAAGATAAGGCGCTGTTGGTCTGGTGGGATACC 99211
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
|||||||| || ||||| || || |||||||| || || | ||||| || |
Sbjct 99210 CTCCTTGTCCTGAATCTTCGATTTGACGTTGTCGATGGTATCGGAAGACTCCACCTCGAG 99151
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698
||||| ||||| || |||||||| ||
Sbjct 99150 GGTGATGGTCTTACCAGTCAAAGTCTT 99124
Score = 136 bits (150), Expect = 9e-27
Identities = 149/198 (75%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
|||||| | ||||| ||||||||||| || || || |||| |||||||||| | ||
Sbjct 99046 ACGAAGACGGAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCGGAAAGGGT 98987
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| ||||| || |||||||| || || |||||||| ||||||||||| || ||||| ||
Sbjct 98986 GCGGCCATCCTCGAGCTGCTTTCCGGCAAAGATAAGGCGTTGTTGGTCTGGGGGAATGCC 98927
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
|||||||| || ||||| ||| || ||||| ||||| || | ||||| || |
Sbjct 98926 CTCCTTGTCCTGAATCTTGCTCTTGACGTTGTCGATAGTGTCCGAAGACTCCACCTCGAG 98867
Query 225672 CGTGATCGTCTTGCCCGT 225689
||||| ||||| || ||
Sbjct 98866 GGTGATGGTCTTACCGGT 98849
Score = 125 bits (138), Expect = 2e-23
Identities = 155/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||| | ||| ||||| || ||||||| || || ||| | |||| |||||
Sbjct 99548 AGGACCAAGTGAAGAGTACTCTCCTTTTGGATGTTATAGTCGCTGAGGGTTCGGCCATCC 99489
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| || ||||| || ||||| || || || ||||||||||| || ||||| ||||| ||
Sbjct 99488 TCAAGTTGCTTGCCGGCGAAAATGAGGCGCTGTTGGTCGGGTGGGATACCCTCCTTATCC 99429
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|| ||||| ||||||| ||||| |||||||| | ||| || || || ||||| |||
Sbjct 99428 TGAATCTTAGACTTCACATTGTCGATTGTGTCTGAAGATTCGACCTCCAAAGTGATGGTC 99369
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|| || || | ||| || | ||| | ||||||
Sbjct 99368 TTTCCGGTAAGAGTCTTGACGAAGATTTGCAT 99337
>seq2459
Length=125150
Score = 114 bits (126), Expect = 3e-20
Identities = 137/186 (74%), Gaps = 0/186 (0%)
Strand=Plus/Plus
Query 225504 GACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTC 225563
||| || || || || || || || |||| ||||| || | | || | ||||| ||
Sbjct 17196 GACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGACCATCCTC 17255
Query 225564 TAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTG 225623
|| ||||| ||||| ||||| | || |||||||| || ||||| || |||||||| ||
Sbjct 17256 AAGTTGCTTTCCAGCAAAGATCAAACGCTGTTGGTCCGGTGGAATTCCCTCCTTGTCCTG 17315
Query 225624 GATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTT 225683
|||||| ||| ||| ||||||||||| |||| || || || | ||||| |||||
Sbjct 17316 GATCTTGGACTTGACATTGTCGATGGTGTCCGAGGACTCAACCTCAAGGGTGATGGTCTT 17375
Query 225684 GCCCGT 225689
||||||
Sbjct 17376 GCCCGT 17381
>seq1113
Length=83002
Score = 111 bits (122), Expect = 4e-19
Identities = 123/164 (75%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585
||||||| || ||||| | || ||| | |||||||| || ||||| |||||||||||
Sbjct 57007 TTTTGGATGTTATAATCTGACAGAGTGCGTCCATCTTCAAGTTGCTTTCCAGCGAAGATC 57066
Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645
| || |||||||| || ||||| || |||||||| |||||||| ||| ||| |||
Sbjct 57067 AAACGCTGTTGGTCCGGTGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 57126
Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689
|| ||||| | ||| || || | ||||| ||||| |||||
Sbjct 57127 ATAGTGTCGCTAGATTCGACCTCGAGGGTGATGGTCTTACCCGT 57170
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192491611318154
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |