Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19] 2,591 sequences; 63,226,382 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq1906 149 1e-30 seq778 140 8e-28 seq2459 114 3e-20 seq1113 111 4e-19 >seq1906 Length=51260 Score = 149 bits (164), Expect = 1e-30 Identities = 210/289 (73%), Gaps = 7/289 (2%) Strand=Plus/Minus Query 7441 ACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGG-TACTATATTTTCTATGAT 7499 || |||||||||||||||| | |||||||| ||||| || ||| |||||| | | Sbjct 48852 ACATTATATTTAATATTTGCTTTATTTTCTGG-ATTATTGGGTACAGCTTTTTCTGTTCT 48794 Query 7500 TATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAA-ATATTGAGTGGTAATAGCCAACTTT 7558 |||||| ||||||||| | || ||| |||| |||||| | |||| ||||| | Sbjct 48793 TATAAGATTAGAATTAAGCGGACCTGGTGTTCAATATATTGCA-GATAAT---CAACTAT 48738 Query 7559 ACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTA 7618 | || | ||| || || || || || | | ||||| |||||| | || ||||| | | Sbjct 48737 ATAATGCTATCATAACTGCCCACGCTATATTAATGATATTCTTTATGGTCATGCCAGCTT 48678 Query 7619 TGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTT 7678 | ||||| || |||||||| | || || || ||| | | || | ||| |||||||| | Sbjct 48677 TAATAGGAGGATTCGGAAACTTTTTAGTACCATTATTAGTAGGGGGTCCAGATATGGCAT 48618 Query 7679 TTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATT 7727 | ||||| ||||| ||||||||||| |||||| |||| ||| ||||| Sbjct 48617 TCCCAAGACTTAATAATATAAGTTTCTGATTATTACCACCTAGTTTATT 48569 >seq778 Length=242110 Score = 140 bits (154), Expect = 8e-28 Identities = 155/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| |||| || || | ||| ||||||||||| || |||| ||||||||||| | || Sbjct 99330 ACGGAGTCGGAGAACCAAGTGCAGAGTGGATTCCTTCTGGATATTGTAATCGGAAAGTGT 99271 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| ||||| |||||||| || |||||||| || || ||||| Sbjct 99270 GCGACCGTCCTCAAGCTGCTTGCCAGCAAAGATAAGGCGCTGTTGGTCTGGTGGGATACC 99211 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| || ||||| || || |||||||| || || | ||||| || | Sbjct 99210 CTCCTTGTCCTGAATCTTCGATTTGACGTTGTCGATGGTATCGGAAGACTCCACCTCGAG 99151 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698 ||||| ||||| || |||||||| || Sbjct 99150 GGTGATGGTCTTACCAGTCAAAGTCTT 99124 Score = 136 bits (150), Expect = 9e-27 Identities = 149/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||||| ||||||||||| || || || |||| |||||||||| | || Sbjct 99046 ACGAAGACGGAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCGGAAAGGGT 98987 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || |||||||| || || |||||||| ||||||||||| || ||||| || Sbjct 98986 GCGGCCATCCTCGAGCTGCTTTCCGGCAAAGATAAGGCGTTGTTGGTCTGGGGGAATGCC 98927 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| || ||||| ||| || ||||| ||||| || | ||||| || | Sbjct 98926 CTCCTTGTCCTGAATCTTGCTCTTGACGTTGTCGATAGTGTCCGAAGACTCCACCTCGAG 98867 Query 225672 CGTGATCGTCTTGCCCGT 225689 ||||| ||||| || || Sbjct 98866 GGTGATGGTCTTACCGGT 98849 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | ||| ||||| || ||||||| || || ||| | |||| ||||| Sbjct 99548 AGGACCAAGTGAAGAGTACTCTCCTTTTGGATGTTATAGTCGCTGAGGGTTCGGCCATCC 99489 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || ||||| || ||||| || || || ||||||||||| || ||||| ||||| || Sbjct 99488 TCAAGTTGCTTGCCGGCGAAAATGAGGCGCTGTTGGTCGGGTGGGATACCCTCCTTATCC 99429 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||||||| ||||| |||||||| | ||| || || || ||||| ||| Sbjct 99428 TGAATCTTAGACTTCACATTGTCGATTGTGTCTGAAGATTCGACCTCCAAAGTGATGGTC 99369 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || | ||| || | ||| | |||||| Sbjct 99368 TTTCCGGTAAGAGTCTTGACGAAGATTTGCAT 99337 >seq2459 Length=125150 Score = 114 bits (126), Expect = 3e-20 Identities = 137/186 (74%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 225504 GACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTC 225563 ||| || || || || || || || |||| ||||| || | | || | ||||| || Sbjct 17196 GACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGACCATCCTC 17255 Query 225564 TAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTG 225623 || ||||| ||||| ||||| | || |||||||| || ||||| || |||||||| || Sbjct 17256 AAGTTGCTTTCCAGCAAAGATCAAACGCTGTTGGTCCGGTGGAATTCCCTCCTTGTCCTG 17315 Query 225624 GATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTT 225683 |||||| ||| ||| ||||||||||| |||| || || || | ||||| ||||| Sbjct 17316 GATCTTGGACTTGACATTGTCGATGGTGTCCGAGGACTCAACCTCAAGGGTGATGGTCTT 17375 Query 225684 GCCCGT 225689 |||||| Sbjct 17376 GCCCGT 17381 >seq1113 Length=83002 Score = 111 bits (122), Expect = 4e-19 Identities = 123/164 (75%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 ||||||| || ||||| | || ||| | |||||||| || ||||| ||||||||||| Sbjct 57007 TTTTGGATGTTATAATCTGACAGAGTGCGTCCATCTTCAAGTTGCTTTCCAGCGAAGATC 57066 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 | || |||||||| || ||||| || |||||||| |||||||| ||| ||| ||| Sbjct 57067 AAACGCTGTTGGTCCGGTGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 57126 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 || ||||| | ||| || || | ||||| ||||| ||||| Sbjct 57127 ATAGTGTCGCTAGATTCGACCTCGAGGGTGATGGTCTTACCCGT 57170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192491611318154