Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19] 2,591 sequences; 63,226,382 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq2371 306 5e-78 >seq2371 Length=131994 Score = 306 bits (338), Expect = 5e-78 Identities = 1154/1787 (65%), Gaps = 34/1787 (2%) Strand=Plus/Minus Query 76771 TCTT-ATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATA 76829 |||| ||| | ||| ||||| || || | || || | ||||||| ||||||||||| Sbjct 29146 TCTTGATCAACTGTGAACTGGATGGGTGCCGAGGCAGCCATTGTACGGAGATAGTACATT 29087 Query 76830 CCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTA 76889 ||||| || ||||||| |||| || ||||||||| || || | || | Sbjct 29086 CCAGTCTTAAGACCCAACTTCCAGCCTGCGAAATGCATACTGGTAATCTTCCCCATGGTT 29027 Query 76890 GGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCC 76949 ||||| || || || ||||| || ||| |||||| ||||| || || | || || Sbjct 29026 GGATCCTTCATGTGGATGTTCATTGATTGAGATTGATCAATGAACGCACCACGGTCGGCA 28967 Query 76950 GCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATA 77009 ||||| | | ||||| ||| | |||||||||| ||| ||| ||| |||||| Sbjct 28966 GCCATCTGAACGATGGTACGTTGTGAGATTTCCCAAACAGTCTTGTAAAGGGCCTTGATA 28907 Query 77010 TCATCTGGAAGGTTTGTA---TTTTGAATGGAACCACCATCTGATATAATTGTATTCTTT 77066 ||| |||| | ||||| | ||||||||||| ||||| || | || || || || Sbjct 28906 TCAGCTGGGATGTTTGGAACGTTTTGAATGGATCCACCGTCAGCAATGATACGGTTTTTC 28847 Query 77067 ATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAACTATT 77126 || | ||| ||||| | | | || | | | | || || ||||| || | | Sbjct 28846 ATGTTATCGGACCACAGTCCCATATCAACCAGATCCTTGAGAAGCCATGGATTGACAACT 28787 Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 || || ||||||| | || | |||| ||| || || ||| ||||| || | | Sbjct 28786 TGGAACTCTCCAGCAAGAACACGTCGAGAGTAGATGTTGGAGGTGTATGGCTCGAAGCAC 28727 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 || ||| ||| | ||||||| ||| |||||||||||||| || || | ||||| Sbjct 28726 TCGTTGAATCCAAGAATTTGACTGGTACTGGCAGTTGGCATAGGAGCGACGAGCAAACTG 28667 Query 77247 TTTCTGAGACCATGTGTTCTGATTTTAT-CTTTTAGATATTTCCAATCCCAAAGATCTGA 77305 || | || ||||||| || | | |||| || || ||||||||||||||| | Sbjct 28666 TTGCGGATACCATGTTGAGCAATCTGCTGCTTTAAGCTAGC-CCAATCCCAAAGATCCGT 28608 Query 77306 AGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCCATTATA 77365 |||| |||| |||| | || ||||| || || || ||| ||| || | || Sbjct 28607 AGGTGTAACACCCCACATGTCATATTGGAGCTCGCCCTTGGAGGCAGGTGAGCCTTGGTA 28548 Query 77366 TGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTAATA 77425 || ||||| | || | | | || | || || ||| || ||| || Sbjct 28547 AGTCTCATATGTACCATGAATCTTTGCCAACTCCATGGAAGCAGTCAAAGCAGCGTGGTA 28488 Query 77426 AATTGTTTCGAAAATCTTCTTATTGAGAT-CTTGTGCTTCAATACTATCAAACGGATAAT 77484 ||| |||||||| || | | ||||| | |||| || || || || ||| | Sbjct 28487 AATGGTTTCGAAGATTTGGATGTTGAGGTGCTTG-GCCTCTGGGGACTCGAATGGAAGAC 28429 Query 77485 GTAAAAG--AATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCT 77542 | || || || |||| |||| || | || || || |||| | |||||||||| || | Sbjct 28428 G-AAGAGCCAAGAAAG-CATCAGCAAGACCTTGGACACCAAGAGCAATAGGTCTGTGGCG 28371 Query 77543 CTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTGAG 77602 |||| || | || || || | ||| || || || || || ||||| || || | Sbjct 28370 GAAATTGCTCTTTCTTGCCTCGGGCACAGGGTAGTAGTTGATATCGATAATCTTGTTCAA 28311 Query 77603 ATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATCTTCCA-TCTA 77661 || | || || |||| || || | || || | || ||| | | || ||| Sbjct 28310 GTTCTTGACGACAACTTGGCAGACCTCGTGAAGCTTCTGGAAGTCATAAGTGGCAGTCTT 28251 Query 77662 T--AACAA-ACATGTTC--AAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGC 77716 | ||| | ||||| | ||| | ||||| | || ||||| || ||||||| || Sbjct 28250 CTCATCAACATATGTTGGGAGAGCCAGCGATGCCAAGTTGCAAACAGCAACCTCATCAG- 28192 Query 77717 GTTGGCA-TATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTT 77775 || || |||| | || || ||||| | || | | ||| || || ||||| | Sbjct 28191 GTGCACAGTATTCGACAATTTCAGTACACAAGTTGGAGCTTCGGATGGTACCAAGATTCT 28132 Query 77776 GTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAA 77835 ||||||||||||| ||||| | ||||| ||||| || || || | || || || Sbjct 28131 TTTGGTTGCTCTTTCGGTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCAGTCTCGG 28072 Query 77836 TCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATCATAGATTTGTATCGCC 77895 | || | |||| ||||| | ||| | | || || || | ||| | | Sbjct 28071 TTTGAGCCTCGAGGATAGAGTACCAAAGCTTTTGGGCCTTGATGCTC---TTGCGGCCCT 28015 Query 77896 T---CTCTCTTTCATATTGA--GTATATAGCCGTTCAAATTCATCTCCCCAAACATCATC 77950 | ||| || |||| ||| | |||| || ||||| || || | || || | Sbjct 28014 TGCCCTCAGACTCGTATTTCTCGTACAAAGCC--TCGAATTCGTCACCGTAGACGTCGGC 27957 Query 77951 CAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTT--AACTCGT 78008 ||| ||||| || ||||| ||||||||||||| ||||||| | ||| || ||| || Sbjct 27956 CAAACCAGGACACTCATTAGGGCACATCAATGTCCAGTCA--AGGTTCTTTTCAACACGC 27899 Query 78009 TTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCA 78068 ||||| |||||||| || ||||| || || || ||||| |||| | | || || Sbjct 27898 TTCATGAAGAGATCTGGAATCCAGAGGGCGTAGAAAAGATCACGGGCACGAACCTCCTCC 27839 Query 78069 TTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGA 78128 ||||| |||||| || ||||| ||||| | || ||| | |||||||| || || Sbjct 27838 TTTCCGTGGTTCTTTCGGAGGTCGAGGAACTCGAAAACATCGGCGTGCCATGGCTCGAGG 27779 Query 78129 TATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTA 78188 || || || | | | |||||||| || ||||| || ||||| | ||||| |||||||| Sbjct 27778 TAGATGGCGAAAGCACCAGGTCGCTTGTTACCACCTTGATCAACATATCGAGCGGTGTTG 27719 Query 78189 TTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAA 78248 || |||| | | ||| |||| || ||||| || |||| ||||| || | ||| ||| Sbjct 27718 TTGAAAACCCGAAGCATAGGAACGATTCCGTTGGAGTTTCCGTTTGTACCGGCAATGTAA 27659 Query 78249 CTTCCACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATT 78308 ||| | ||||| || | || | || || || ||||| |||| || || Sbjct 27658 GCACCAGTGGCGCGGATTCTGTGAACATTGAGTCCGATACCACCTGCGTTCTTTGAAATC 27599 Query 78309 AGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGA 78368 | || ||| ||||| || ||||||||||| || || ||||| ||| |||||| | Sbjct 27598 ATGGCACAAATCTTCAAAGTGTCGTAGATACCATCAATGCTGTCCTCCTTCATGTCGATG 27539 Query 78369 AGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCA 78428 || || || ||| | ||| || || || ||| ||| | ||| || || || Sbjct 27538 AGGAAGCATGAAGAAAGTTGTGCCTGTGGTGTACCAGCAGCAAAAAGTGTTGGTGAGGCG 27479 Query 78429 TGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCAT 78488 || || || | || || | | ||||| ||||| || || | || || ||| Sbjct 27478 TGGGTGAAGTACTTGCTGGACATCAAGTTGTAAGTTTCGATGGCAGCCTCAATATCCTCG 27419 Query 78489 TGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTC 78535 || ||||| || || |||||||| | |||||| || || | ||| Sbjct 27418 CCGTGTATTCCGACAGCGACACGCATGATCATATGTTGTGGACGTTC 27372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694646301414240