Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19]
2,591 sequences; 63,226,382 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq2371 306 5e-78
>seq2371
Length=131994
Score = 306 bits (338), Expect = 5e-78
Identities = 1154/1787 (65%), Gaps = 34/1787 (2%)
Strand=Plus/Minus
Query 76771 TCTT-ATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATA 76829
|||| ||| | ||| ||||| || || | || || | ||||||| |||||||||||
Sbjct 29146 TCTTGATCAACTGTGAACTGGATGGGTGCCGAGGCAGCCATTGTACGGAGATAGTACATT 29087
Query 76830 CCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTA 76889
||||| || ||||||| |||| || ||||||||| || || | || |
Sbjct 29086 CCAGTCTTAAGACCCAACTTCCAGCCTGCGAAATGCATACTGGTAATCTTCCCCATGGTT 29027
Query 76890 GGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCC 76949
||||| || || || ||||| || ||| |||||| ||||| || || | || ||
Sbjct 29026 GGATCCTTCATGTGGATGTTCATTGATTGAGATTGATCAATGAACGCACCACGGTCGGCA 28967
Query 76950 GCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATA 77009
||||| | | ||||| ||| | |||||||||| ||| ||| ||| ||||||
Sbjct 28966 GCCATCTGAACGATGGTACGTTGTGAGATTTCCCAAACAGTCTTGTAAAGGGCCTTGATA 28907
Query 77010 TCATCTGGAAGGTTTGTA---TTTTGAATGGAACCACCATCTGATATAATTGTATTCTTT 77066
||| |||| | ||||| | ||||||||||| ||||| || | || || || ||
Sbjct 28906 TCAGCTGGGATGTTTGGAACGTTTTGAATGGATCCACCGTCAGCAATGATACGGTTTTTC 28847
Query 77067 ATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAACTATT 77126
|| | ||| ||||| | | | || | | | | || || ||||| || | |
Sbjct 28846 ATGTTATCGGACCACAGTCCCATATCAACCAGATCCTTGAGAAGCCATGGATTGACAACT 28787
Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186
|| || ||||||| | || | |||| ||| || || ||| ||||| || | |
Sbjct 28786 TGGAACTCTCCAGCAAGAACACGTCGAGAGTAGATGTTGGAGGTGTATGGCTCGAAGCAC 28727
Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246
|| ||| ||| | ||||||| ||| |||||||||||||| || || | |||||
Sbjct 28726 TCGTTGAATCCAAGAATTTGACTGGTACTGGCAGTTGGCATAGGAGCGACGAGCAAACTG 28667
Query 77247 TTTCTGAGACCATGTGTTCTGATTTTAT-CTTTTAGATATTTCCAATCCCAAAGATCTGA 77305
|| | || ||||||| || | | |||| || || ||||||||||||||| |
Sbjct 28666 TTGCGGATACCATGTTGAGCAATCTGCTGCTTTAAGCTAGC-CCAATCCCAAAGATCCGT 28608
Query 77306 AGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCCATTATA 77365
|||| |||| |||| | || ||||| || || || ||| ||| || | ||
Sbjct 28607 AGGTGTAACACCCCACATGTCATATTGGAGCTCGCCCTTGGAGGCAGGTGAGCCTTGGTA 28548
Query 77366 TGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTAATA 77425
|| ||||| | || | | | || | || || ||| || ||| ||
Sbjct 28547 AGTCTCATATGTACCATGAATCTTTGCCAACTCCATGGAAGCAGTCAAAGCAGCGTGGTA 28488
Query 77426 AATTGTTTCGAAAATCTTCTTATTGAGAT-CTTGTGCTTCAATACTATCAAACGGATAAT 77484
||| |||||||| || | | ||||| | |||| || || || || ||| |
Sbjct 28487 AATGGTTTCGAAGATTTGGATGTTGAGGTGCTTG-GCCTCTGGGGACTCGAATGGAAGAC 28429
Query 77485 GTAAAAG--AATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCT 77542
| || || || |||| |||| || | || || || |||| | |||||||||| || |
Sbjct 28428 G-AAGAGCCAAGAAAG-CATCAGCAAGACCTTGGACACCAAGAGCAATAGGTCTGTGGCG 28371
Query 77543 CTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTGAG 77602
|||| || | || || || | ||| || || || || || ||||| || || |
Sbjct 28370 GAAATTGCTCTTTCTTGCCTCGGGCACAGGGTAGTAGTTGATATCGATAATCTTGTTCAA 28311
Query 77603 ATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATCTTCCA-TCTA 77661
|| | || || |||| || || | || || | || ||| | | || |||
Sbjct 28310 GTTCTTGACGACAACTTGGCAGACCTCGTGAAGCTTCTGGAAGTCATAAGTGGCAGTCTT 28251
Query 77662 T--AACAA-ACATGTTC--AAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGC 77716
| ||| | ||||| | ||| | ||||| | || ||||| || ||||||| ||
Sbjct 28250 CTCATCAACATATGTTGGGAGAGCCAGCGATGCCAAGTTGCAAACAGCAACCTCATCAG- 28192
Query 77717 GTTGGCA-TATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTT 77775
|| || |||| | || || ||||| | || | | ||| || || ||||| |
Sbjct 28191 GTGCACAGTATTCGACAATTTCAGTACACAAGTTGGAGCTTCGGATGGTACCAAGATTCT 28132
Query 77776 GTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAA 77835
||||||||||||| ||||| | ||||| ||||| || || || | || || ||
Sbjct 28131 TTTGGTTGCTCTTTCGGTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCAGTCTCGG 28072
Query 77836 TCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATCATAGATTTGTATCGCC 77895
| || | |||| ||||| | ||| | | || || || | ||| | |
Sbjct 28071 TTTGAGCCTCGAGGATAGAGTACCAAAGCTTTTGGGCCTTGATGCTC---TTGCGGCCCT 28015
Query 77896 T---CTCTCTTTCATATTGA--GTATATAGCCGTTCAAATTCATCTCCCCAAACATCATC 77950
| ||| || |||| ||| | |||| || ||||| || || | || || |
Sbjct 28014 TGCCCTCAGACTCGTATTTCTCGTACAAAGCC--TCGAATTCGTCACCGTAGACGTCGGC 27957
Query 77951 CAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTT--AACTCGT 78008
||| ||||| || ||||| ||||||||||||| ||||||| | ||| || ||| ||
Sbjct 27956 CAAACCAGGACACTCATTAGGGCACATCAATGTCCAGTCA--AGGTTCTTTTCAACACGC 27899
Query 78009 TTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCA 78068
||||| |||||||| || ||||| || || || ||||| |||| | | || ||
Sbjct 27898 TTCATGAAGAGATCTGGAATCCAGAGGGCGTAGAAAAGATCACGGGCACGAACCTCCTCC 27839
Query 78069 TTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGA 78128
||||| |||||| || ||||| ||||| | || ||| | |||||||| || ||
Sbjct 27838 TTTCCGTGGTTCTTTCGGAGGTCGAGGAACTCGAAAACATCGGCGTGCCATGGCTCGAGG 27779
Query 78129 TATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTA 78188
|| || || | | | |||||||| || ||||| || ||||| | ||||| ||||||||
Sbjct 27778 TAGATGGCGAAAGCACCAGGTCGCTTGTTACCACCTTGATCAACATATCGAGCGGTGTTG 27719
Query 78189 TTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAA 78248
|| |||| | | ||| |||| || ||||| || |||| ||||| || | ||| |||
Sbjct 27718 TTGAAAACCCGAAGCATAGGAACGATTCCGTTGGAGTTTCCGTTTGTACCGGCAATGTAA 27659
Query 78249 CTTCCACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATT 78308
||| | ||||| || | || | || || || ||||| |||| || ||
Sbjct 27658 GCACCAGTGGCGCGGATTCTGTGAACATTGAGTCCGATACCACCTGCGTTCTTTGAAATC 27599
Query 78309 AGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGA 78368
| || ||| ||||| || ||||||||||| || || ||||| ||| |||||| |
Sbjct 27598 ATGGCACAAATCTTCAAAGTGTCGTAGATACCATCAATGCTGTCCTCCTTCATGTCGATG 27539
Query 78369 AGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCA 78428
|| || || ||| | ||| || || || ||| ||| | ||| || || ||
Sbjct 27538 AGGAAGCATGAAGAAAGTTGTGCCTGTGGTGTACCAGCAGCAAAAAGTGTTGGTGAGGCG 27479
Query 78429 TGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCAT 78488
|| || || | || || | | ||||| ||||| || || | || || |||
Sbjct 27478 TGGGTGAAGTACTTGCTGGACATCAAGTTGTAAGTTTCGATGGCAGCCTCAATATCCTCG 27419
Query 78489 TGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTC 78535
|| ||||| || || |||||||| | |||||| || || | |||
Sbjct 27418 CCGTGTATTCCGACAGCGACACGCATGATCATATGTTGTGGACGTTC 27372
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694646301414240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |