Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19]
2,591 sequences; 63,226,382 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq778 98.7 2e-15
seq2459 89.7 1e-12
>seq778
Length=242110
Score = 98.7 bits (108), Expect = 2e-15
Identities = 149/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
||||| | ||||||||| ||| ||||||||||| || ||| | |||| |||||
Sbjct 99548 AGGACCAAGTGAAGAGTACTCTCCTTTTGGATGTTATAGTCGCTGAGGGTTCGGCCATCC 99489
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || || |||||||| || || | ||| ||||| | | ||| || ||||| ||
Sbjct 99488 TCAAGTTGCTTGCCGGCGAAAATGAGGCGCTGTTGGTCGGGTGGGATACCCTCCTTATCC 99429
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072
||||| || || ||| | || | |||||||| || || || | ||| || ||
Sbjct 99428 TGAATCTTAGACTTCACATTGTCGATTGTGTCTGAAGATTCGACCTCCAAAGTGATGGTC 99369
Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || || |||||||| ||||||| |||||
Sbjct 99368 TTTCCGGTAAGAGTCTTGACGAAGATTTGCAT 99337
Score = 86.0 bits (94), Expect = 1e-11
Identities = 136/193 (70%), Gaps = 4/193 (2%)
Strand=Plus/Minus
Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951
|||||| || || ||||| ||||| || |||||||||||||||| | || | |||||
Sbjct 99037 GAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCGGAAAGGGTGCGGCCATC 98978
Query 151952 TTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009
|| || ||||| ||||| |||||||| | || ||||| | | || || |||||
Sbjct 98977 CTCGAGCTGCTTT--CCGGCAAAGATAAGGCGTTGTTGGTCTGGGGGAATGCCCTCCTTG 98920
Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATA 152069
|| ||||| || ||||| | || | |||| ||| ||| || || || || ||
Sbjct 98919 TCCTGAATCTTGCTCTTGACGTTGTCGATAGTGTCCGAAGACTCCACCTCGAGGGTGATG 98860
Query 152070 GTTTTGCCCGTGA 152082
|| || || ||||
Sbjct 98859 GTCTTACCGGTGA 98847
>seq2459
Length=125150
Score = 89.7 bits (98), Expect = 1e-12
Identities = 135/190 (71%), Gaps = 4/190 (2%)
Strand=Plus/Plus
Query 151895 GACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTC 151954
||| |||||||| || ||||| || ||||||||||| || | | || | ||||| ||
Sbjct 17196 GACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGACCATCCTC 17255
Query 151955 TAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| ||||| || || ||||| | | ||| ||||||| | ||||| ||||| ||
Sbjct 17256 AAGTTGCTTT--CCAGCAAAGATCAAACGCTGTTGGTCCGGTGGAATTCCCTCCTTGTCC 17313
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072
|| || || |||||| | || | | |||| || ||| || ||||| || || ||
Sbjct 17314 TGGATCTTGGACTTGACATTGTCGATGGTGTCCGAGGACTCAACCTCAAGGGTGATGGTC 17373
Query 152073 TTGCCCGTGA 152082
||||||||||
Sbjct 17374 TTGCCCGTGA 17383
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153782496394561
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |