Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19] 2,591 sequences; 63,226,382 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq778 176 9e-39 seq1113 152 1e-31 seq2459 145 2e-29 seq2036 105 1e-17 >seq778 Length=242110 Score = 176 bits (194), Expect = 9e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||| || ||||| ||||| || || ||||| || ||||| |||||||| || Sbjct 99791 CCTCCACGAAGACGAAGCACCAGGTGCAAAGTGCTCTCCTTTTGAATGTTGTAATCGCTG 99732 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || || |||||||| | || || || || |||||||| || ||||| || ||| Sbjct 99731 AGGGTACGACCATCCTCCAACTGCTTGCCTGCGAAGATCAATCGCTGTTGATCTGGTGGA 99672 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 ||||||||||| || |||||||||| || || |||| || |||||||||| || ||| Sbjct 99671 ATACCCTCCTTATCCTGGATCTTTGACTTGACATTATCAATCGTGTCCGAAGACTCAACT 99612 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||||| ||||| || |||||||||||||| || |||||||| Sbjct 99611 TCTAATGTGATAGTCTTGCCAGTCAAAGTCTTAACAAAGATCTGCAT 99565 Score = 159 bits (176), Expect = 7e-34 Identities = 166/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || |||| || | ||| ||| || ||||| ||||| || | Sbjct 99336 ACCACCACGGAGTCGGAGAACCAAGTGCAGAGTGGATTCCTTCTGGATATTGTAATCGGA 99277 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| ||||| || ||||| || || || || |||||||| | || |||||||| || Sbjct 99276 AAGTGTGCGACCGTCCTCAAGCTGCTTGCCAGCAAAGATAAGGCGCTGTTGGTCTGGTGG 99217 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||||||||| || ||||| | ||| ||| | ||||| || || |||| || || Sbjct 99216 GATACCCTCCTTGTCCTGAATCTTCGATTTGACGTTGTCGATGGTATCGGAAGACTCCAC 99157 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGA 283089 ||||| ||||| |||||||| ||||||||||| |||| Sbjct 99156 CTCGAGGGTGATGGTCTTACCAGTCAAAGTCTTGACGA 99119 Score = 156 bits (172), Expect = 9e-33 Identities = 159/205 (78%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| || || || || || || | || || || ||||||||||| || | Sbjct 99052 ACCGCCACGAAGACGGAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCGGA 98993 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| |||||||||||||| || || || ||||||||||| | ||||||||||| || Sbjct 98992 AAGGGTGCGGCCATCCTCGAGCTGCTTTCCGGCAAAGATAAGGCGTTGTTGGTCTGGGGG 98933 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTT-ACGGTATCGATAGTGTCCGAAGCTTCGA 283050 ||| ||||||||||| || ||||| ||| || ||| | |||||||||||||||| || | Sbjct 98932 AATGCCCTCCTTGTCCTGAATCTT-GCTCTTGACGTTGTCGATAGTGTCCGAAGACTCCA 98874 Query 283051 CTTCGAGAGTGATCGTCTTACCCGT 283075 | ||||| ||||| |||||||| || Sbjct 98873 CCTCGAGGGTGATGGTCTTACCGGT 98849 Score = 154 bits (170), Expect = 3e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| || || ||||| |||| || | || || || ||||||||||| ||||| Sbjct 99564 ACCACCGCGGAGACGAAGGACCAAGTGAAGAGTACTCTCCTTTTGGATGTTATAGTCGCT 99505 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || ||||||||||| ||||| || ||||| || || | || |||||||| || Sbjct 99504 GAGGGTTCGGCCATCCTCAAGTTGCTTGCCGGCGAAAATGAGGCGCTGTTGGTCGGGTGG 99445 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||||||||| || || ||||| | || || | ||||| ||||| |||| |||||| Sbjct 99444 GATACCCTCCTTATCCTGAATCTTAGACTTCACATTGTCGATTGTGTCTGAAGATTCGAC 99385 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | |||||| ||||| || || | |||||| ||||| || ||||| Sbjct 99384 CTCCAAAGTGATGGTCTTTCCGGTAAGAGTCTTGACGAAGATTTGCAT 99337 >seq1113 Length=83002 Score = 152 bits (168), Expect = 1e-31 Identities = 141/179 (79%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 ||||||||||| || || | || ||||| ||||| || ||||| || || || |||||| Sbjct 57007 TTTTGGATGTTATAATCTGACAGAGTGCGTCCATCTTCAAGTTGCTTTCCAGCGAAGATC 57066 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 ||||| |||||||| ||||| ||||||||||| |||||||| | || || | ||| Sbjct 57067 AAACGCTGTTGGTCCGGTGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 57126 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 |||||||| || |||||| ||||| ||||| ||||||||||| | ||||| ||||| Sbjct 57127 ATAGTGTCGCTAGATTCGACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTGACGAA 57185 >seq2459 Length=125150 Score = 145 bits (160), Expect = 2e-29 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||| || || | || ||||| | || || || |||||||||||||| | | Sbjct 17179 CCTCCACGTAGACGTAAGACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 17238 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || || |||||||| ||||| || || |||||||||||||| |||||||| ||| Sbjct 17239 AGGGTACGACCATCCTCAAGTTGCTTTCCAGCAAAGATCAAACGCTGTTGGTCCGGTGGA 17298 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| |||||||| | || || | ||||| |||||||| | || || Sbjct 17299 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCCGAGGACTCAACC 17358 Query 283053 TCGAGAGTGATCGTCTTACCCGT 283075 || || ||||| ||||| ||||| Sbjct 17359 TCAAGGGTGATGGTCTTGCCCGT 17381 >seq2036 Length=314316 Score = 105 bits (116), Expect = 1e-17 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 230205 GACGCTATTCCTTGCCGTCTTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAA 230264 || ||| |||||||| ||| ||||||||||||| | || ||| |||||| || || Sbjct 235808 GAGGCTCTTCCTTGCGCGCTTCTCGGCATGAATGCCAACCTGATGAAGCAATACATTGAG 235749 Query 230265 TTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAAC 230324 || || || |||||| || || | | || || | ||||| || || || ||| Sbjct 235748 TTTGTCGCCGATCGTCTTCTCCTTTCTCTCGGCAATGAGAAGGTTTACAAGGTTGCCAAC 235689 Query 230325 CCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGT 230384 || |||| || |||||| ||| || ||| || || || ||||||||||| |||||| Sbjct 235688 CCATTCGACTTCATGGAGAACATCTCTCTCGCCGGAAAGACCAACTTCTTCGAGAAGCGT 235629 Query 230385 GTCAGCGATTATCAAAGGCCCGGTGT 230410 ||| ||||| |||| | ||||||| Sbjct 235628 GTCGCTGATTACCAAAAGGCCGGTGT 235603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046704451202514