Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19]
2,591 sequences; 63,226,382 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq778 176 9e-39
seq1113 152 1e-31
seq2459 145 2e-29
seq2036 105 1e-17
>seq778
Length=242110
Score = 176 bits (194), Expect = 9e-39
Identities = 175/227 (77%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|| ||||| || ||||| ||||| || || ||||| || ||||| |||||||| ||
Sbjct 99791 CCTCCACGAAGACGAAGCACCAGGTGCAAAGTGCTCTCCTTTTGAATGTTGTAATCGCTG 99732
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| || || |||||||| | || || || || |||||||| || ||||| || |||
Sbjct 99731 AGGGTACGACCATCCTCCAACTGCTTGCCTGCGAAGATCAATCGCTGTTGATCTGGTGGA 99672
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
||||||||||| || |||||||||| || || |||| || |||||||||| || |||
Sbjct 99671 ATACCCTCCTTATCCTGGATCTTTGACTTGACATTATCAATCGTGTCCGAAGACTCAACT 99612
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| | ||||| ||||| || |||||||||||||| || ||||||||
Sbjct 99611 TCTAATGTGATAGTCTTGCCAGTCAAAGTCTTAACAAAGATCTGCAT 99565
Score = 159 bits (176), Expect = 7e-34
Identities = 166/218 (76%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| || || || |||| || | ||| ||| || ||||| ||||| || |
Sbjct 99336 ACCACCACGGAGTCGGAGAACCAAGTGCAGAGTGGATTCCTTCTGGATATTGTAATCGGA 99277
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||| ||||| || ||||| || || || || |||||||| | || |||||||| ||
Sbjct 99276 AAGTGTGCGACCGTCCTCAAGCTGCTTGCCAGCAAAGATAAGGCGCTGTTGGTCTGGTGG 99217
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|||||||||||||| || ||||| | ||| ||| | ||||| || || |||| || ||
Sbjct 99216 GATACCCTCCTTGTCCTGAATCTTCGATTTGACGTTGTCGATGGTATCGGAAGACTCCAC 99157
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGA 283089
||||| ||||| |||||||| ||||||||||| ||||
Sbjct 99156 CTCGAGGGTGATGGTCTTACCAGTCAAAGTCTTGACGA 99119
Score = 156 bits (172), Expect = 9e-33
Identities = 159/205 (78%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||| ||||| || || || || || || | || || || ||||||||||| || |
Sbjct 99052 ACCGCCACGAAGACGGAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCGGA 98993
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||| |||||||||||||| || || || ||||||||||| | ||||||||||| ||
Sbjct 98992 AAGGGTGCGGCCATCCTCGAGCTGCTTTCCGGCAAAGATAAGGCGTTGTTGGTCTGGGGG 98933
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTT-ACGGTATCGATAGTGTCCGAAGCTTCGA 283050
||| ||||||||||| || ||||| ||| || ||| | |||||||||||||||| || |
Sbjct 98932 AATGCCCTCCTTGTCCTGAATCTT-GCTCTTGACGTTGTCGATAGTGTCCGAAGACTCCA 98874
Query 283051 CTTCGAGAGTGATCGTCTTACCCGT 283075
| ||||| ||||| |||||||| ||
Sbjct 98873 CCTCGAGGGTGATGGTCTTACCGGT 98849
Score = 154 bits (170), Expect = 3e-32
Identities = 171/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
|||||| || || ||||| |||| || | || || || ||||||||||| |||||
Sbjct 99564 ACCACCGCGGAGACGAAGGACCAAGTGAAGAGTACTCTCCTTTTGGATGTTATAGTCGCT 99505
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| || ||||||||||| ||||| || ||||| || || | || |||||||| ||
Sbjct 99504 GAGGGTTCGGCCATCCTCAAGTTGCTTGCCGGCGAAAATGAGGCGCTGTTGGTCGGGTGG 99445
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||||||||||| || || ||||| | || || | ||||| ||||| |||| ||||||
Sbjct 99444 GATACCCTCCTTATCCTGAATCTTAGACTTCACATTGTCGATTGTGTCTGAAGATTCGAC 99385
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| | |||||| ||||| || || | |||||| ||||| || |||||
Sbjct 99384 CTCCAAAGTGATGGTCTTTCCGGTAAGAGTCTTGACGAAGATTTGCAT 99337
>seq1113
Length=83002
Score = 152 bits (168), Expect = 1e-31
Identities = 141/179 (79%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971
||||||||||| || || | || ||||| ||||| || ||||| || || || ||||||
Sbjct 57007 TTTTGGATGTTATAATCTGACAGAGTGCGTCCATCTTCAAGTTGCTTTCCAGCGAAGATC 57066
Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031
||||| |||||||| ||||| ||||||||||| |||||||| | || || | |||
Sbjct 57067 AAACGCTGTTGGTCCGGTGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 57126
Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090
|||||||| || |||||| ||||| ||||| ||||||||||| | ||||| |||||
Sbjct 57127 ATAGTGTCGCTAGATTCGACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTGACGAA 57185
>seq2459
Length=125150
Score = 145 bits (160), Expect = 2e-29
Identities = 154/203 (76%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|| ||||| || || | || ||||| | || || || |||||||||||||| | |
Sbjct 17179 CCTCCACGTAGACGTAAGACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 17238
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| || || |||||||| ||||| || || |||||||||||||| |||||||| |||
Sbjct 17239 AGGGTACGACCATCCTCAAGTTGCTTTCCAGCAAAGATCAAACGCTGTTGGTCCGGTGGA 17298
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
|| ||||||||||| |||||||| | || || | ||||| |||||||| | || ||
Sbjct 17299 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCCGAGGACTCAACC 17358
Query 283053 TCGAGAGTGATCGTCTTACCCGT 283075
|| || ||||| ||||| |||||
Sbjct 17359 TCAAGGGTGATGGTCTTGCCCGT 17381
>seq2036
Length=314316
Score = 105 bits (116), Expect = 1e-17
Identities = 147/206 (71%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 230205 GACGCTATTCCTTGCCGTCTTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAA 230264
|| ||| |||||||| ||| ||||||||||||| | || ||| |||||| || ||
Sbjct 235808 GAGGCTCTTCCTTGCGCGCTTCTCGGCATGAATGCCAACCTGATGAAGCAATACATTGAG 235749
Query 230265 TTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAAC 230324
|| || || |||||| || || | | || || | ||||| || || || |||
Sbjct 235748 TTTGTCGCCGATCGTCTTCTCCTTTCTCTCGGCAATGAGAAGGTTTACAAGGTTGCCAAC 235689
Query 230325 CCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGT 230384
|| |||| || |||||| ||| || ||| || || || ||||||||||| ||||||
Sbjct 235688 CCATTCGACTTCATGGAGAACATCTCTCTCGCCGGAAAGACCAACTTCTTCGAGAAGCGT 235629
Query 230385 GTCAGCGATTATCAAAGGCCCGGTGT 230410
||| ||||| |||| | |||||||
Sbjct 235628 GTCGCTGATTACCAAAAGGCCGGTGT 235603
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046704451202514
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |