Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19] 2,591 sequences; 63,226,382 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq778 120 2e-22 seq1113 102 6e-17 seq2459 89.7 4e-13 >seq778 Length=242110 Score = 120 bits (132), Expect = 2e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| |||||| || ||||||||||||||||| || ||| ||| || | || || Sbjct 99545 ACCAAGTGAAGAGTACTCTCCTTTTGGATGTTATAGTCGCTGAGGGTTCGGCCATCCTCA 99486 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || ||||| ||||| || || | ||||| || || | || | ||| ||||| ||| Sbjct 99485 AGTTGCTTGCCGGCGAAAATGAGGCGCTGTTGGTCGGGTGGGATACCCTCCTTATCCTGA 99426 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||||| | | || ||||| | ||||| ||||||| || || |||||| Sbjct 99425 ATCTTAGACTTCACATTGTCGATTGTGTCTGAAGATTCGACCTCCAAAGTGATGGTCTTT 99366 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || ||||| |||||||||||||| Sbjct 99365 CCGGTAAGAGTCTTGACGAAGATTTGCAT 99337 Score = 113 bits (124), Expect = 3e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||||||| | |||||||||||||| |||||||||||| ||| || | || || Sbjct 99774 CACCAGGTGCAAAGTGCTCTCCTTTTGAATGTTGTAATCGCTGAGGGTACGACCATCCTC 99715 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 || |||||| || || |||||||| ||||| ||||||| || | ||| ||||| ||| Sbjct 99714 CAACTGCTTGCCTGCGAAGATCAATCGCTGTTGATCTGGTGGAATACCCTCCTTATCCTG 99655 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||| | | | || ||||| | || || || || | || || ||||| Sbjct 99654 GATCTTTGACTTGACATTATCAATCGTGTCCGAAGACTCAACTTCTAATGTGATAGTCTT 99595 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || | ||||| || ||||| ||||| Sbjct 99594 GCCAGTCAAAGTCTTAACAAAGATCTGCAT 99565 Score = 86.0 bits (94), Expect = 5e-12 Identities = 131/187 (70%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| || || |||||| |||||||||||||||| || ||| | || || Sbjct 99033 ACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCGGAAAGGGTGCGGCCATCCTCG 98974 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||||||||| | || || || |||| || | || ||||| ||| Sbjct 98973 AGCTGCTTTCCGGCAAAGATAAGGCGTTGTTGGTCTGGGGGAATGCCCTCCTTGTCCTGA 98914 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | || ||||| | || |||||||| | || || ||||| Sbjct 98913 ATCTTGCTCTTGACGTTGTCGATAGTGTCCGAAGACTCCACCTCGAGGGTGATGGTCTTA 98854 Query 44309 CCCGTGA 44315 || |||| Sbjct 98853 CCGGTGA 98847 >seq1113 Length=83002 Score = 102 bits (112), Expect = 6e-17 Identities = 134/184 (73%), Gaps = 4/184 (2%) Strand=Plus/Plus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 ||||||||||||| ||||| | || ||| | || || || ||||| || || |||| Sbjct 57005 CCTTTTGGATGTTATAATCTGACAGAGTGCGTCCATCTTCAAGTTGCTTTCCAGCGAAGA 57064 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265 |||||||||| || || | || | || ||||| ||| ||||| ||| || ||| Sbjct 57065 TCAAACGCTGTTGGTCCGGTGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 57124 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | || |||||| ||||| ||||| | || || ||||| |||||||||||||| || Sbjct 57125 --CGATAGTGTCGCTAGATTCGACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTGAC 57182 Query 44326 GAAG 44329 |||| Sbjct 57183 GAAG 57186 >seq2459 Length=125150 Score = 89.7 bits (98), Expect = 4e-13 Identities = 136/192 (71%), Gaps = 4/192 (2%) Strand=Plus/Plus Query 44126 AACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCG 44185 || || || ||||| || |||||| ||||||||||| || | || || | || Sbjct 17194 AAGACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGACCATCC 17253 Query 44186 TCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCC 44245 || || ||||| || ||||||||||||||||| || || | || | || ||||| ||| Sbjct 17254 TCAAGTTGCTTTCCAGCAAAGATCAAACGCTGTTGGTCCGGTGGAATTCCCTCCTTGTCC 17313 Query 44246 GTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCG 44303 ||||| ||| || ||| | |||||||| | ||| || ||||| | || || | Sbjct 17314 TGGATCTTGGACTTGACATTGT--CGATGGTGTCCGAGGACTCAACCTCAAGGGTGATGG 17371 Query 44304 TCTTTCCCGTGA 44315 |||| ||||||| Sbjct 17372 TCTTGCCCGTGA 17383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359979032290647