Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19]
2,591 sequences; 63,226,382 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq778 152 1e-31
seq1113 140 8e-28
seq2459 122 2e-22
>seq778
Length=242110
Score = 152 bits (168), Expect = 1e-31
Identities = 146/187 (78%), Gaps = 0/187 (0%)
Strand=Plus/Plus
Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002
|||| || || || ||||||||||||||||| || ||||| ||||| ||||||||
Sbjct 98847 TCACCGGTAAGACCATCACCCTCGAGGTGGAGTCTTCGGACACTATCGACAACGTCAAGA 98906
Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062
|||||||||||||| || || || || || ||||| ||||| |||||||| |||||||
Sbjct 98907 GCAAGATTCAGGACAAGGAGGGCATTCCCCCAGACCAACAACGCCTTATCTTTGCCGGAA 98966
Query 178063 AACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGC 178122
| |||||||| ||||| | || ||| ||||||| ||| |||| || || || || || |
Sbjct 98967 AGCAGCTCGAGGATGGCCGCACCCTTTCCGATTACAACATCCAGAAGGAGTCGACTCTCC 99026
Query 178123 ATCTTGT 178129
| || ||
Sbjct 99027 ACCTCGT 99033
Score = 147 bits (162), Expect = 5e-30
Identities = 154/201 (77%), Gaps = 1/201 (0%)
Strand=Plus/Plus
Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990
|||| || ||| | || || || || ||||||||||||||||| || || |||||||
Sbjct 99119 TCGTCAAGACTTTGACTGGTAAGACCATCACCCTCGAGGTGGAGTCTTCCGATACCATCG 99178
Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050
| ||||||||| |||||||||||||| || || ||||| || ||||| || || ||||
Sbjct 99179 ACAACGTCAAATCGAAGATTCAGGACAAGGAGGGTATCCCACCAGACCAACAGCGCCTTA 99238
Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110
|||| || || || ||||| || || || | || ||| ||||||| || |||| || |
Sbjct 99239 TCTTTGCTGGCAAGCAGCTTGAGGACGGTCGCACACTTTCCGATTACAATATCCAGAAGG 99298
Query 178111 AATCAACACTGCATCTTGTTT 178131
|||| || ||||| |||| ||
Sbjct 99299 AATCCACTCTGCA-CTTGGTT 99318
Score = 123 bits (136), Expect = 6e-23
Identities = 140/188 (74%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| ||||| || ||||| || ||||| || ||||| | ||||| ||| ||||||
Sbjct 99340 CAAATCTTCGTCAAGACTCTTACCGGAAAGACCATCACTTTGGAGGTCGAATCTTCAGAC 99399
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| || || || ||||||||||| || || || ||||| || ||||| ||
Sbjct 99400 ACAATCGACAATGTGAAGTCTAAGATTCAGGATAAGGAGGGTATCCCACCCGACCAACAG 99459
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || || |||||||| || || || || ||||| | || || ||| |||||| ||
Sbjct 99460 CGCCTCATTTTCGCCGGCAAGCAACTTGAGGATGGCCGAACCCTCAGCGACTATAACATC 99519
Query 178104 CAAAAAGA 178111
||||| ||
Sbjct 99520 CAAAAGGA 99527
>seq1113
Length=83002
Score = 140 bits (154), Expect = 8e-28
Identities = 141/182 (77%), Gaps = 6/182 (3%)
Strand=Plus/Minus
Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCAGACACC 177986
||||| || || ||||| || || || |||||||||||||| ||| ||| |||||
Sbjct 57185 TTCGTCAAGACCCTCACGGGTAAGACCATCACCCTCGAGGTCGAATCTAGC---GACACT 57129
Query 177987 ATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGA 178046
||||| || ||||| ||||| |||||||| || ||||| || |||||||| || ||
Sbjct 57128 ATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCACCGGACCAACAGCGT 57069
Query 178047 CTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAA 178106
| |||||||| ||||| || || ||||||||| | ||||| | ||||||||| |||||
Sbjct 57068 TTGATCTTCGCTGGAAAGCAACTTGAAGATGGACGCACTCTGTCAGATTATAACATCCAA 57009
Query 178107 AA 178108
||
Sbjct 57008 AA 57007
>seq2459
Length=125150
Score = 122 bits (134), Expect = 2e-22
Identities = 141/190 (74%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002
|||| || || || |||||||| ||||| || ||| ||||||||||| || |||||
Sbjct 17383 TCACGGGCAAGACCATCACCCTTGAGGTTGAGTCCTCGGACACCATCGACAATGTCAAGT 17324
Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062
||||| |||||||| || ||||| || |||||||| || || | ||||| || ||||
Sbjct 17323 CCAAGATCCAGGACAAGGAGGGAATTCCACCGGACCAACAGCGTTTGATCTTTGCTGGAA 17264
Query 178063 AACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGC 178122
| || || || ||||| | || ||| | || || ||| |||| || || || || || |
Sbjct 17263 AGCAACTTGAGGATGGTCGTACCCTTTCGGACTACAACATCCAGAAGGAGTCGACCCTTC 17204
Query 178123 ATCTTGTTTT 178132
|||| || ||
Sbjct 17203 ATCTCGTCTT 17194
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203691239509654
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |