Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19] 2,591 sequences; 63,226,382 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq778 152 1e-31 seq1113 140 8e-28 seq2459 122 2e-22 >seq778 Length=242110 Score = 152 bits (168), Expect = 1e-31 Identities = 146/187 (78%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002 |||| || || || ||||||||||||||||| || ||||| ||||| |||||||| Sbjct 98847 TCACCGGTAAGACCATCACCCTCGAGGTGGAGTCTTCGGACACTATCGACAACGTCAAGA 98906 Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062 |||||||||||||| || || || || || ||||| ||||| |||||||| ||||||| Sbjct 98907 GCAAGATTCAGGACAAGGAGGGCATTCCCCCAGACCAACAACGCCTTATCTTTGCCGGAA 98966 Query 178063 AACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGC 178122 | |||||||| ||||| | || ||| ||||||| ||| |||| || || || || || | Sbjct 98967 AGCAGCTCGAGGATGGCCGCACCCTTTCCGATTACAACATCCAGAAGGAGTCGACTCTCC 99026 Query 178123 ATCTTGT 178129 | || || Sbjct 99027 ACCTCGT 99033 Score = 147 bits (162), Expect = 5e-30 Identities = 154/201 (77%), Gaps = 1/201 (0%) Strand=Plus/Plus Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990 |||| || ||| | || || || || ||||||||||||||||| || || ||||||| Sbjct 99119 TCGTCAAGACTTTGACTGGTAAGACCATCACCCTCGAGGTGGAGTCTTCCGATACCATCG 99178 Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050 | ||||||||| |||||||||||||| || || ||||| || ||||| || || |||| Sbjct 99179 ACAACGTCAAATCGAAGATTCAGGACAAGGAGGGTATCCCACCAGACCAACAGCGCCTTA 99238 Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110 |||| || || || ||||| || || || | || ||| ||||||| || |||| || | Sbjct 99239 TCTTTGCTGGCAAGCAGCTTGAGGACGGTCGCACACTTTCCGATTACAATATCCAGAAGG 99298 Query 178111 AATCAACACTGCATCTTGTTT 178131 |||| || ||||| |||| || Sbjct 99299 AATCCACTCTGCA-CTTGGTT 99318 Score = 123 bits (136), Expect = 6e-23 Identities = 140/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || ||||| || ||||| || ||||| | ||||| ||| |||||| Sbjct 99340 CAAATCTTCGTCAAGACTCTTACCGGAAAGACCATCACTTTGGAGGTCGAATCTTCAGAC 99399 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || || ||||||||||| || || || ||||| || ||||| || Sbjct 99400 ACAATCGACAATGTGAAGTCTAAGATTCAGGATAAGGAGGGTATCCCACCCGACCAACAG 99459 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || |||||||| || || || || ||||| | || || ||| |||||| || Sbjct 99460 CGCCTCATTTTCGCCGGCAAGCAACTTGAGGATGGCCGAACCCTCAGCGACTATAACATC 99519 Query 178104 CAAAAAGA 178111 ||||| || Sbjct 99520 CAAAAGGA 99527 >seq1113 Length=83002 Score = 140 bits (154), Expect = 8e-28 Identities = 141/182 (77%), Gaps = 6/182 (3%) Strand=Plus/Minus Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCAGACACC 177986 ||||| || || ||||| || || || |||||||||||||| ||| ||| ||||| Sbjct 57185 TTCGTCAAGACCCTCACGGGTAAGACCATCACCCTCGAGGTCGAATCTAGC---GACACT 57129 Query 177987 ATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGA 178046 ||||| || ||||| ||||| |||||||| || ||||| || |||||||| || || Sbjct 57128 ATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCACCGGACCAACAGCGT 57069 Query 178047 CTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAA 178106 | |||||||| ||||| || || ||||||||| | ||||| | ||||||||| ||||| Sbjct 57068 TTGATCTTCGCTGGAAAGCAACTTGAAGATGGACGCACTCTGTCAGATTATAACATCCAA 57009 Query 178107 AA 178108 || Sbjct 57008 AA 57007 >seq2459 Length=125150 Score = 122 bits (134), Expect = 2e-22 Identities = 141/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002 |||| || || || |||||||| ||||| || ||| ||||||||||| || ||||| Sbjct 17383 TCACGGGCAAGACCATCACCCTTGAGGTTGAGTCCTCGGACACCATCGACAATGTCAAGT 17324 Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062 ||||| |||||||| || ||||| || |||||||| || || | ||||| || |||| Sbjct 17323 CCAAGATCCAGGACAAGGAGGGAATTCCACCGGACCAACAGCGTTTGATCTTTGCTGGAA 17264 Query 178063 AACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGC 178122 | || || || ||||| | || ||| | || || ||| |||| || || || || || | Sbjct 17263 AGCAACTTGAGGATGGTCGTACCCTTTCGGACTACAACATCCAGAAGGAGTCGACCCTTC 17204 Query 178123 ATCTTGTTTT 178132 |||| || || Sbjct 17203 ATCTCGTCTT 17194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203691239509654