Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19]
2,591 sequences; 63,226,382 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq778 122 8e-23
seq1113 109 5e-19
seq2459 105 6e-18
>seq778
Length=242110
Score = 122 bits (134), Expect = 8e-23
Identities = 153/205 (75%), Gaps = 4/205 (2%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
||||| || ||||| | || || || || || ||||||||| ||||| || |||||
Sbjct 99051 CCGCCACGAAGACGGAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCGGAA 98992
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|||||||| | || ||||||||||| ||||| || || ||||| |||||||| | ||||
Sbjct 98991 AGGGTGCGGCCATCCTCGAGCTGCTTTCCGGCAAAGATAAGGCGTTGTTGGTCTGGGGGA 98932
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCT-TCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813
| || |||||||||| ||| | ||||| | ||| | | | |||||| |||||||
Sbjct 98931 ATGCCCTCCTTGTCC-TGA-ATCTTGCTCTTGACGTTGTCGATAGTGTCCGAAGACTCCA 98874
Query 41814 CCTCCACCGTTATCGTTTTACCCGT 41838
|||| | || || || ||||| ||
Sbjct 98873 CCTCGAGGGTGATGGTCTTACCGGT 98849
Score = 120 bits (132), Expect = 3e-22
Identities = 167/229 (73%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| ||||| ||||| | |||| || || || |||||||| || |||||||||||| |
Sbjct 99563 CCACCGCGGAGACGAAGGACCAAGTGAAGAGTACTCTCCTTTTGGATGTTATAGTCGCTG 99504
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
||||| || | || || || |||||||||||||| || |||||||||||||| | ||
Sbjct 99503 AGGGTTCGGCCATCCTCAAGTTGCTTGCCGGCGAAAATGAGGCGCTGTTGGTCGGGTGGG 99444
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813
| | |||||| ||| ||| | || | |||| || | | | ||||| || || |
Sbjct 99443 ATACCCTCCTTATCC-TGAATCTTAGACTTC-ACATTGTCGATTGTGTCTGAAGATTCGA 99386
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||||| || || || || || || || ||||| ||||| || |||||
Sbjct 99385 CCTCCAAAGTGATGGTCTTTCCGGTAAGAGTCTTGACGAAGATTTGCAT 99337
Score = 111 bits (122), Expect = 1e-19
Identities = 157/218 (72%), Gaps = 2/218 (1%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || || || | |||| ||||| ||| |||||||| || || || |||||
Sbjct 99335 CCACCACGGAGTCGGAGAACCAAGTGCAGAGTGGATTCCTTCTGGATATTGTAATCGGAA 99276
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| ||||| |||| || ||||||||||| || || || |||||||||||||| | ||
Sbjct 99275 AGTGTGCGACCGTCCTCAAGCTGCTTGCCAGCAAAGATAAGGCGCTGTTGGTCTGGTGGG 99216
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| | |||||||||| ||| | || | || ||| | | | || ||| ||||||||
Sbjct 99215 ATACCCTCCTTGTCC-TGAATCTTCGATTTGACGTTGTCGATGGTATCGGAAGACTCCAC 99157
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGA 41852
||| | || || || ||||| |||| ||||| ||||
Sbjct 99156 CTCGAGGGTGATGGTCTTACCAGTCAAAGTCTTGACGA 99119
Score = 111 bits (122), Expect = 1e-19
Identities = 163/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | |||||| |||| ||||||||||| |||||||| || ||| |
Sbjct 99791 CCTCCACGAAGACGAAGCACCAGGTGCAAAGTGCTCTCCTTTTGAATGTTGTAATCGCTG 99732
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
||||| || | || || | ||||||||| ||||| |||| |||||||| || | |||
Sbjct 99731 AGGGTACGACCATCCTCCAACTGCTTGCCTGCGAAGATCAATCGCTGTTGATCTGGTGGA 99672
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCA-ACGACGACACAGTGTCGCTCGACTCCAC 41814
| | |||||| ||| ||| ||| ||| | | | | | ||||| ||||| ||
Sbjct 99671 ATACCCTCCTTATCCTGGATCTTTGACTTGACATTATCA-ATCGTGTCCGAAGACTCAAC 99613
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| | || || || || || |||| ||||| || || ||||||||
Sbjct 99612 TTCTAATGTGATAGTCTTGCCAGTCAAAGTCTTAACAAAGATCTGCAT 99565
>seq1113
Length=83002
Score = 109 bits (120), Expect = 5e-19
Identities = 135/183 (74%), Gaps = 4/183 (2%)
Strand=Plus/Plus
Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732
|||| || |||||||| || || || ||||| | || || || ||||| || ||||| |
Sbjct 57005 CCTTTTGGATGTTATAATCTGACAGAGTGCGTCCATCTTCAAGTTGCTTTCCAGCGAAGA 57064
Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGA 41790
||| ||||||||||||| |||| | |||||||||| ||| || ||| || |
Sbjct 57065 TCAAACGCTGTTGGTCCGGTGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 57124
Query 41791 CGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850
|| | ||||||||| || || ||||| | || || || |||||||| || ||||| ||
Sbjct 57125 CG--ATAGTGTCGCTAGATTCGACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTGAC 57182
Query 41851 GAA 41853
|||
Sbjct 57183 GAA 57185
>seq2459
Length=125150
Score = 105 bits (116), Expect = 6e-18
Identities = 109/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || ||||||||||| || ||||| || || ||||||||| ||||| ||||| ||
Sbjct 17179 CCTCCACGTAGACGTAAGACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 17238
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
||||| || | || || || ||||| || || || |||| ||||||||||||| |||
Sbjct 17239 AGGGTACGACCATCCTCAAGTTGCTTTCCAGCAAAGATCAAACGCTGTTGGTCCGGTGGA 17298
Query 41756 ACGCTCTCCTTGTCCATGATTTT 41778
| | |||||||||| ||| ||
Sbjct 17299 ATTCCCTCCTTGTCCTGGATCTT 17321
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462289027129200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |