Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypocrella_20siamensis_20[genbank_20GCA_5F000731825.1_202014-07-18]
2,034 sequences; 28,856,456 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq1793 215 6e-51
seq1923 82.4 9e-11
>seq1793
Length=11804
Score = 215 bits (238), Expect = 6e-51
Identities = 622/947 (66%), Gaps = 24/947 (3%)
Strand=Plus/Minus
Query 53711 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAA 53770
|| || || || || ||||| ||||| | | | | |||| || ||||| |||||
Sbjct 7656 GAAGCAAGGTTGCAGACGGCCACCTCGTCCGGGGCGGAGTATTCGATAATCTCCGTGCAG 7597
Query 53771 AGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 53830
|||||| || |||||||||||| || | || || ||||| ||||| || ||||||
Sbjct 7596 AGATTAGAACTTCTGATGGTTCCTAGGTTCTTCTGGTTGCTCTTCTTGTTGCAAGCATCC 7537
Query 53831 TTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACG 53890
|| || || ||||| || | || || ||| |||| | ||| | ||| | | |||||
Sbjct 7536 TTGTAGAGCATGAAGGGGTTGCCGGTCTCAGTCTGAGCTTCCAAAATGGAGTACCAGAGC 7477
Query 53891 ACACGAGCCTTTATTATAGATTTGTATCTCTTT---TCTCTTTCGTATAGTGTATACAAT 53947
| || || | ||| | ||| || | ||||| | ||||
Sbjct 7476 TTCTGGGCGCGGATGGTC---TTGCGACCCTTGCCCTCACGCTCGTACTTTTCGTACAGA 7420
Query 53948 CGTTCAAACTCGTCTCCCCAAA-CATTGTCCAAT-CCAGGACATTCATCCGGACACATCA 54005
|||||||| ||| ||| | || | ||| || || || |||| |||||||| |
Sbjct 7419 GCCTCAAACTC--CTCACCATAGCAGTCGGCAAGGCCGGGGCACTCATTGGGACACATGA 7362
Query 54006 ACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTA 54065
| ||| || |||| | || || || ||||| ||||||||||| ||||| || || |
Sbjct 7361 GAGTCCAGTCGCCGTTCTTCTCGACACGCTTCATGAAGAGATCAGGGATCCACAGGGCGA 7302
Query 54066 TAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACG 54125
|| || || | | | | ||||| || || ||||| || |||||||||
Sbjct 7301 GGAAAAGGTCCCGCGCGCGAACCTCCTCCTTGCCGTGGTTCTTACGTAGGTCGAGGAACT 7242
Query 54126 CCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTC 54185
| | | ||||| ||||| || |||| ||| |||| | | || || || ||||| |
Sbjct 7241 CAAAGACATCAGCGTGCCAAGGCTCCAGGTAGATGGCAAAGGCACCTGGTCGCTTGTTGC 7182
Query 54186 CTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCAT 54245
| ||||| |||| ||||| || ||||| || | |||| | ||| ||||| | ||||
Sbjct 7181 CACCCTGGTCTACATATCTGGCCGTGTTGTTGAACACTCGGAGCATGGGAATGACGCCAT 7122
Query 54246 TGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTACTAATTGA 54303
|||| | ||| ||||| || | || || ||| ||||||| || | |||
Sbjct 7121 TGGAAGTACCGTTGGTGCCAGCAATGTATGAGCCAGTGGCACGGATGCGGTGGACGTTG- 7063
Query 54304 TAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 54363
|| || || || || |||||||| ||||| | ||||| || | ||| ||||||||
Sbjct 7062 -AGGCCAATGCCGCCAGCCATTTTGGAGATCATGGCGCAGGTCTTGAGCGTGTCATAGAT 7004
Query 54364 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT 54423
|||||| || || |||||| |||||| | || || ||| |||| ||| |
Sbjct 7003 GCCCTCGATGCTGTCATCCTTCATGTCGACGAGGAAGCAGGATGACAGCTGGGCCTGGGG 6944
Query 54424 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 54483
||| || ||||| || | ||| ||||| ||||| || || | || || | || ||
Sbjct 6943 AGTACCAGCATTGAAAAGGGTCGGAGAGGCGTGGGTGAAGAACTTGCTGGACATGAGGTT 6884
Query 54484 GTACGTCTCGAT----AGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGC 54538
|||||| || || ||| | | | | || || |||| || || |||||||||
Sbjct 6883 GTACGTTTCAATGACGCGCTCAATGT-TGTCGCCCCAGATG----CCGACAGCGACACGC 6829
Query 54539 ATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTT 54598
|| | ||| ||||| |||| || || |||||| ||| | ||||| | ||| |||
Sbjct 6828 ATAATCATATGCTGGGGTCGCTCGACAATCTTGCCGTTGAGCTTCAGGAGGTACGATCGC 6769
Query 54599 TCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTA 54645
|||| ||| || || ||||| || | ||| ||||||| |||||
Sbjct 6768 TCCAGAGTCTTGAAGCCAAAGTACTGGTAATTGAAGTCTCTGTCGTA 6722
>seq1923
Length=107003
Score = 82.4 bits (90), Expect = 9e-11
Identities = 104/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194
|| || || ||| ||| ||||||||||| | || | |||||| || || || ||
Sbjct 7755 CAGGCAAAGTCGGTGTGCAGACCCTCGTCGCGCGAGATGAGTTCGTTAGAGAAGGTCAGG 7814
Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 24254
|||||||| | ||| ||||| || |||||||| ||||| ||||| | || |||||
Sbjct 7815 CCGGGCATCAAGCCCCGCTTCTTCAGCCAAAAGATGGAGGCAAAGGCGCCGCTGAAGAAG 7874
Query 24255 ATTCCTTCTACTGCCGCAAAGGC 24277
|| || || || || ||||||||
Sbjct 7875 ATGCCCTCAACAGCGGCAAAGGC 7897
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593706504628320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |