Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypocrella_20siamensis_20[genbank_20GCA_5F000731825.1_202014-07-18] 2,034 sequences; 28,856,456 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq1745 152 4e-32 seq1893 127 2e-24 seq1479 95.1 1e-14 >seq1745 Length=53961 Score = 152 bits (168), Expect = 4e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || ||||| | || || ||||||||||| || ||| || ||||||||||| |||||| Sbjct 17004 CCCCCGCGCAGTCGCAGCACCAAGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCGCTC 17063 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||||| ||||||||||||||| ||||| ||||||| ||||||||||| || || Sbjct 17064 AGGGTGCGGCCATCCTCGAGCTGTTTGCCAGCAAAGATGAGTCGCTGCTGATCCGGGGGG 17123 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 || || |||||||| ||| || || || | || | |||||| | ||| ||| Sbjct 17124 ATTCCTTCCTTGTCCTGAATCTTGGACTTGACATTGTCAATGGTGTCGGAAGACTCCACC 17183 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| ||| | ||| || || ||||| ||||| || || |||||||| Sbjct 17184 TCGAGGGTGATCGTCTTCCCCGTCAGGGTTTTGACGAAGATCTGCAT 17230 >seq1893 Length=9943 Score = 127 bits (140), Expect = 2e-24 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 ||||| || || || |||||||| ||| || ||| || ||| ||||| || || ||| Sbjct 772 GTAGATTCCTTCTGGATGTTGTAGTCGGACAGAGTACGGCCATCTTCGAGTTGCTTGCCA 713 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| | || || |||||||| || ||||| |||||||||||||| ||| ||| || Sbjct 712 GCGAAAATCAGTCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGAATCTTTGACTTG 653 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| |||||| | ||||||||| | ||| | || |||||||| || || Sbjct 652 ACATTGTCGATGGTGTCGGATGACTCGACCTCAAGGGTGATGGTCTTGCCGGTGAGTGTC 593 Query 118722 TTTACAAAAATCTGCATG 118739 || || |||||||||||| Sbjct 592 TTCACGAAAATCTGCATG 575 Score = 118 bits (130), Expect = 9e-22 Identities = 142/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 118547 CTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTA 118606 ||| || || |||||||||||||||| |||||| ||| || | ||| |||||||| | Sbjct 1298 CTCCTTCTGGATGTTGTAATCGCTCAGAGTGCGACCATCTTCCAACTGCTTTCCAGCAAA 1239 Query 118607 GATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTG 118666 |||||||| |||||||| ||||| || || ||||| ||| |||||| || || | Sbjct 1238 AATGAGACGTTGCTGATCCGGAGGAATACCTTCCTTATCTTGAATTTTAGACTTGACGTT 1179 Query 118667 TTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 118726 || | || || || || ||||| | ||| | || ||||| |||| ||||| || Sbjct 1178 GTCAATAGTATCACTGGATTCCACCTCCAAGGTAATTGTCTTGCCTGTCAAGGTTTTGAC 1119 Query 118727 AAAAATCTGCATG 118739 |||||| |||||| Sbjct 1118 AAAAATTTGCATG 1106 Score = 105 bits (116), Expect = 6e-18 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 ||||||||| || | ||| || || |||||||||||||| ||| | |||||| ||| Sbjct 1091 CAACACCAAATGAAGTGTTGATTCCTTTTGAATGTTGTAGTCGGAGAGGGTGCGCCCATC 1032 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || || || || |||||| | || ||||| ||||| || ||||| || || ||||| || Sbjct 1031 TTCAAGTTGCTTGCCAGCGAAAATCAGACGTTGCTGGTCCGGAGGGATCCCTTCCTTATC 972 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 ||| ||| || || | || | ||||| | | ||| ||||||| ||| | || Sbjct 971 CTGAATCTTTGACTTGACGTTGTCAATAGTGTCGGAGGACTCAACCTCGAGGGTAATGGT 912 Query 118706 TTTGCCGGTCAGAGTTTTTAC 118726 ||||| ||||| || || || Sbjct 911 CTTGCCAGTCAGGGTCTTGAC 891 >seq1479 Length=130260 Score = 95.1 bits (104), Expect = 1e-14 Identities = 129/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 ||||| || ||||| ||| || || || ||||||||| || || || ||| | || Sbjct 49447 TTTTGGATATTGTAGTCGGACAGGGTTCGGCCATCCTCGAGTTGCTTGCCGGCGAAAATC 49506 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 | |||||||| || ||||| || ||||||||||| ||||| || || | ||| Sbjct 49507 AATCGCTGCTGGTCAGGAGGAATACCCTCCTTGTCCTGGATTTTAGACTTGACATTGTCG 49566 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730 | |||||| | | ||||||||||| ||| | ||||| || ||||| || || || ||| Sbjct 49567 ATGGTGTCAGAGGACTCGACCTCGAGGGTGATGGTTTTACCCGTCAGCGTCTTCACGAAA 49626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433819645615528