Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypocrella_20siamensis_20[genbank_20GCA_5F000731825.1_202014-07-18] 2,034 sequences; 28,856,456 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq1893 140 2e-28 seq1745 111 1e-19 >seq1893 Length=9943 Score = 140 bits (154), Expect = 2e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || | ||| || || || | ||| ||| ||||| ||||||||||||||| Sbjct 802 CCACCCCGAAGACGCAGGACGAGATGCAGCGTAGATTCCTTCTGGATGTTGTAGTCGGAC 743 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || |||| | || || | |||||||| |||||||| || ||||||||||| || Sbjct 742 AGAGTACGGCCATCTTCGAGTTGCTTGCCAGCGAAAATCAGTCGCTGCTGGTCCGGAGGG 683 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| |||||| ||| | || | | || | |||| || ||||| Sbjct 682 ATGCCCTCCTTGTCCTGAATCTTTGACTTGACATTGTCGATGGTGTCGGATGACTCGACC 623 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| ||||||||||| || ||||| || |||||||| Sbjct 622 TCAAGGGTGATGGTCTTGCCGGTGAGTGTCTTCACGAAAATCTGCAT 576 >seq1745 Length=53961 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| |||||||| | |||||||| ||| | || || || ||||| |||||||||||| Sbjct 17003 TCCCCCGCGCAGTCGCAGCACCAAGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCGCT 17062 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 ||| ||| | || || | ||| ||||| || || ||||| |||||||| || ||| Sbjct 17063 CAGGGTGCGGCCATCCTCGAGCTGTTTGCCAGCAAAGATGAGTCGCTGCTGATCCGGGGG 17122 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | |||||||| ||||| ||| | || | | || | |||| || || || Sbjct 17123 GATTCCTTCCTTGTCCTGAATCTTGGACTTGACATTGTCAATGGTGTCGGAAGACTCCAC 17182 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | ||||| || || || || || ||||| || |||||||||||| Sbjct 17183 CTCGAGGGTGATCGTCTTCCCCGTCAGGGTTTTGACGAAGATCTGCATC 17231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323063991247040