Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypocrella_20siamensis_20[genbank_20GCA_5F000731825.1_202014-07-18]
2,034 sequences; 28,856,456 total letters
Query= NC_002687.1
Length=335593
Score E
Sequences producing significant alignments: (Bits) Value
seq1793 131 4e-25
seq1446 96.9 7e-15
>seq1793
Length=11804
Score = 131 bits (144), Expect = 4e-25
Identities = 424/654 (65%), Gaps = 11/654 (2%)
Strand=Plus/Plus
Query 248791 GCGATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAA 248850
|| || | ||||| || ||| || | ||| | | ||||| ||||| || |||||| |
Sbjct 6713 GCCATAGTCTACGACAGAGACTTCAATTACCAGTACTTTGGCTTCAAGACTCTGGAGCGA 6772
Query 248851 TCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGA 248910
||||| ||||| || | | |||||||| || || ||| ||||| ||| | |||||
Sbjct 6773 TCGTACCTCCTGAAGCTCAACGGCAAGATTGTCGAGCGACCCCAGCATATGATTATGCGT 6832
Query 248911 GTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATG 248970
|| |||||||| || || |||| ||| |||| | || ||||||| | |||
Sbjct 6833 GTCGCTGTCGGCATCTGGGGCGACAACATTGAGCGCGTCATTGAAACGTACAACCTCATG 6892
Query 248971 ---AGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGGTACCGTCAAC 249027
|| | || | || || ||| | ||||| || ||||| || ||||| | |
Sbjct 6893 TCCAGCAAGTTCT---TCACCCACGCCTCTCCGACCCTTTTCAATGCTGGTACTCCCCAG 6949
Query 249028 AATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTTAT 249087
|||||| || ||||| || | | |||| | || ||| |||| ||||| |||
Sbjct 6950 GCCCAGCTGTCATCCTGCTTCCTCGTCGACATGAAGGATGACAGCATCGAGGGCATCTAT 7009
Query 249088 GACACGCTTAA-ACAGACGGCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGT 249146
|||||||| || || | || | ||| || ||| | || ||||| || || ||| |||
Sbjct 7010 GACACGCTCAAGACCTGC-GCCATGATCTCCAAAATGGCTGGCGGCATTGGCCTCAACGT 7068
Query 249147 CTCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAATGGGGTCAGTGATGGTAT 249206
| | |||||| || | || || ||||| || || || || |||| |
Sbjct 7069 CCACCGCATCCGTGCCACTGGCTCATACATTGCTGGCACCAACGGTACTTCCAATGGCGT 7128
Query 249207 CGTACCCCTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCATCAACCAGGCCGGGCGC-- 249264
| | ||| | || ||| || | ||| ||||| | | |||||| || |
Sbjct 7129 CATTCCCATGCTCCGAGTGTTCAACAACACGGCCAGATATGTAGACCAGGGTGGCAACAA 7188
Query 249265 -CGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCT 249323
||| || | || ||||| || |||| |||||||| ||| | || ||||||||
Sbjct 7189 GCGACCAGGTGCCTTTGCCATCTACCTGGAGCCTTGGCACGCTGATGTCTTTGAGTTCCT 7248
Query 249324 GGACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCT 249383
||| | |||||| ||||||| ||| | | ||||| ||||| ||| || |||
Sbjct 7249 CGACCTACGTAAGAACCACGGCAAGGAGGAGGTTCGCGCGCGGGACCTTTTCCTCGCCCT 7308
Query 249384 GTGGGTCTCCGACTTGTTCATGCGCCGCGTCAAGGCCGACGGCGATTGGACGCT 249437
|||| || | || | |||||| || ||| || ||||||| ||||| ||
Sbjct 7309 GTGGATCCCTGATCTCTTCATGAAGCGTGTCGAGAAGAACGGCGACTGGACTCT 7362
>seq1446
Length=20280
Score = 96.9 bits (106), Expect = 7e-15
Identities = 261/397 (66%), Gaps = 18/397 (5%)
Strand=Plus/Minus
Query 254001 CTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCG 254060
|| ||||| |||| ||| |||| |||||||| ||||| ||||| || || |||| ||
Sbjct 3859 CTCCCTCACATGCTCTTCTACGGCCCTCCCGGGACAGGGAAGACATCGACAGTCCTTGCC 3800
Query 254061 CTGGCCCGAACCCTGTTGGGCGAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACGCT 254120
|||| || || || | || |||| | || || |||||| |||| ||
Sbjct 3799 TTGGCTAAGGAGCTCTTCGGACCCGAGATGATGAAATCTCGAGTTCTCGAGTTGAATGCG 3740
Query 254121 TCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTTCTC---CAAGA-- 254175
|| |||||||| || | | |||| || || ||| |||| | ||| | || |
Sbjct 3739 TCCGACGAACGTGGCATCTCCATCGTTCGAGAGAAGGTCAAAAATTTTGCACGCATGCAA 3680
Query 254176 -TGTCGATTTCGTCGT-----TCCAACCC--GGC-----TGTCCGCCTTTCAAGCTCGTG 254222
|| | | ||| ||| | ||| | || |||||||| |||||| || |
Sbjct 3679 CTGACCAATTCCTCGACAGGGTACAAGCAAAGGTATCCTTGTCCGCCGTTCAAGATCATC 3620
Query 254223 ATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGATG 254282
||||| ||||| || || ||||||| |||||||| ||| || || |||||||||
Sbjct 3619 ATCCTCGACGAAGCCGATTCCATGACCCAAGACGCGCAAAGCGCACTGCGACGAACGATG 3560
Query 254283 GAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAACTACGTGTCGAAGATCATC 254342
|||||| | | | || || || |||||| | ||||| |||||| | |||||
Sbjct 3559 GAGACGTATAGCAAAATCACTCGATTCTGCCTGATATGCAATTACGTGACTCGCATCATA 3500
Query 254343 GCCCCGCTGGCTTCTCGGTGCGCCAAGTTTCGATTCA 254379
| ||| || || ||| ||| ||||||| | ||||
Sbjct 3499 GACCCTCTCGCCAGTCGCTGCAGCAAGTTTAGGTTCA 3463
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1073738416976512
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |