Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypocrella_20siamensis_20[genbank_20GCA_5F000731825.1_202014-07-18] 2,034 sequences; 28,856,456 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq1793 131 4e-25 seq1446 96.9 7e-15 >seq1793 Length=11804 Score = 131 bits (144), Expect = 4e-25 Identities = 424/654 (65%), Gaps = 11/654 (2%) Strand=Plus/Plus Query 248791 GCGATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAA 248850 || || | ||||| || ||| || | ||| | | ||||| ||||| || |||||| | Sbjct 6713 GCCATAGTCTACGACAGAGACTTCAATTACCAGTACTTTGGCTTCAAGACTCTGGAGCGA 6772 Query 248851 TCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGA 248910 ||||| ||||| || | | |||||||| || || ||| ||||| ||| | ||||| Sbjct 6773 TCGTACCTCCTGAAGCTCAACGGCAAGATTGTCGAGCGACCCCAGCATATGATTATGCGT 6832 Query 248911 GTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATG 248970 || |||||||| || || |||| ||| |||| | || ||||||| | ||| Sbjct 6833 GTCGCTGTCGGCATCTGGGGCGACAACATTGAGCGCGTCATTGAAACGTACAACCTCATG 6892 Query 248971 ---AGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGGTACCGTCAAC 249027 || | || | || || ||| | ||||| || ||||| || ||||| | | Sbjct 6893 TCCAGCAAGTTCT---TCACCCACGCCTCTCCGACCCTTTTCAATGCTGGTACTCCCCAG 6949 Query 249028 AATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTTAT 249087 |||||| || ||||| || | | |||| | || ||| |||| ||||| ||| Sbjct 6950 GCCCAGCTGTCATCCTGCTTCCTCGTCGACATGAAGGATGACAGCATCGAGGGCATCTAT 7009 Query 249088 GACACGCTTAA-ACAGACGGCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGT 249146 |||||||| || || | || | ||| || ||| | || ||||| || || ||| ||| Sbjct 7010 GACACGCTCAAGACCTGC-GCCATGATCTCCAAAATGGCTGGCGGCATTGGCCTCAACGT 7068 Query 249147 CTCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAATGGGGTCAGTGATGGTAT 249206 | | |||||| || | || || ||||| || || || || |||| | Sbjct 7069 CCACCGCATCCGTGCCACTGGCTCATACATTGCTGGCACCAACGGTACTTCCAATGGCGT 7128 Query 249207 CGTACCCCTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCATCAACCAGGCCGGGCGC-- 249264 | | ||| | || ||| || | ||| ||||| | | |||||| || | Sbjct 7129 CATTCCCATGCTCCGAGTGTTCAACAACACGGCCAGATATGTAGACCAGGGTGGCAACAA 7188 Query 249265 -CGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCT 249323 ||| || | || ||||| || |||| |||||||| ||| | || |||||||| Sbjct 7189 GCGACCAGGTGCCTTTGCCATCTACCTGGAGCCTTGGCACGCTGATGTCTTTGAGTTCCT 7248 Query 249324 GGACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCT 249383 ||| | |||||| ||||||| ||| | | ||||| ||||| ||| || ||| Sbjct 7249 CGACCTACGTAAGAACCACGGCAAGGAGGAGGTTCGCGCGCGGGACCTTTTCCTCGCCCT 7308 Query 249384 GTGGGTCTCCGACTTGTTCATGCGCCGCGTCAAGGCCGACGGCGATTGGACGCT 249437 |||| || | || | |||||| || ||| || ||||||| ||||| || Sbjct 7309 GTGGATCCCTGATCTCTTCATGAAGCGTGTCGAGAAGAACGGCGACTGGACTCT 7362 >seq1446 Length=20280 Score = 96.9 bits (106), Expect = 7e-15 Identities = 261/397 (66%), Gaps = 18/397 (5%) Strand=Plus/Minus Query 254001 CTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCG 254060 || ||||| |||| ||| |||| |||||||| ||||| ||||| || || |||| || Sbjct 3859 CTCCCTCACATGCTCTTCTACGGCCCTCCCGGGACAGGGAAGACATCGACAGTCCTTGCC 3800 Query 254061 CTGGCCCGAACCCTGTTGGGCGAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACGCT 254120 |||| || || || | || |||| | || || |||||| |||| || Sbjct 3799 TTGGCTAAGGAGCTCTTCGGACCCGAGATGATGAAATCTCGAGTTCTCGAGTTGAATGCG 3740 Query 254121 TCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTTCTC---CAAGA-- 254175 || |||||||| || | | |||| || || ||| |||| | ||| | || | Sbjct 3739 TCCGACGAACGTGGCATCTCCATCGTTCGAGAGAAGGTCAAAAATTTTGCACGCATGCAA 3680 Query 254176 -TGTCGATTTCGTCGT-----TCCAACCC--GGC-----TGTCCGCCTTTCAAGCTCGTG 254222 || | | ||| ||| | ||| | || |||||||| |||||| || | Sbjct 3679 CTGACCAATTCCTCGACAGGGTACAAGCAAAGGTATCCTTGTCCGCCGTTCAAGATCATC 3620 Query 254223 ATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGATG 254282 ||||| ||||| || || ||||||| |||||||| ||| || || ||||||||| Sbjct 3619 ATCCTCGACGAAGCCGATTCCATGACCCAAGACGCGCAAAGCGCACTGCGACGAACGATG 3560 Query 254283 GAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAACTACGTGTCGAAGATCATC 254342 |||||| | | | || || || |||||| | ||||| |||||| | ||||| Sbjct 3559 GAGACGTATAGCAAAATCACTCGATTCTGCCTGATATGCAATTACGTGACTCGCATCATA 3500 Query 254343 GCCCCGCTGGCTTCTCGGTGCGCCAAGTTTCGATTCA 254379 | ||| || || ||| ||| ||||||| | |||| Sbjct 3499 GACCCTCTCGCCAGTCGCTGCAGCAAGTTTAGGTTCA 3463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073738416976512