Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypocrella_20siamensis_20[genbank_20GCA_5F000731825.1_202014-07-18] 2,034 sequences; 28,856,456 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1793 452 4e-122 seq1923 150 2e-31 seq1893 113 4e-20 seq1745 95.1 1e-14 >seq1793 Length=11804 Score = 452 bits (500), Expect = 4e-122 Identities = 1243/1889 (66%), Gaps = 40/1889 (2%) Strand=Plus/Minus Query 22105 CTTGTCCACTGTAAACTGTAT-GGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGC 22163 || ||| || || ||||| || |||| ||||| | | ||||| | || ||||||| Sbjct 8578 CTGGTCGACGGTGAACTGGATCGGCGCG-GCGGCAGCCTGCGTGCGCAAGTAGTACATGC 8520 Query 22164 CCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCG 22223 ||||||| ||||||| |||||| || ||| || ||||| || | ||| || | | Sbjct 8519 CCGTCTTGAGACCCAGCTTCCAGCCGGCAAAGTGCATCGAGGTGATTTTGCCCATCGTGG 8460 Query 22224 GCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGG 22283 | | ||||| | || | |||||| ||| || || || || || || ||||||| Sbjct 8459 GGTCTTTCATGTGGATGTTCAGCGACTGCGACTGGTCAATGAAGGCGCCGCGGTCGGCGG 8400 Query 22284 CCATATTTATCAATGT-ACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATC 22342 |||| | | ||| | |||| ||| || ||||| ||||||||||| || | |||| Sbjct 8399 CCATCTGAA-CAACCTGACGCTGCGAAATCTCCCAAACGGTCTTGTAGAGCGCCTTGATG 8341 Query 22343 TCTAACGGTATCGATTCGA-TCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTT 22401 || || || | | || | | |||| ||| ||||| | | ||||| || || Sbjct 8340 TCGGCAGGGAT-GTTGGGAATGTTTTGGATGGATCCGTTCTCGGCAATGATGCGGTTCTT 8282 Query 22402 AATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCAC 22461 || | |||| ||||| ||| ||| || || || |||| || ||||||| || Sbjct 8281 CATGGCATCGGACCACAGACCCATGTCGACCAGGTCCTTGAGGAGCCACGGGTTCACGAC 8222 Query 22462 TTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGA 22521 || ||||| || | |||||| ||||| ||||| |||||||| ||| | || |||||| | Sbjct 8221 CTGGAACTCCCCAGCCAAGACACGGCGCTGGTAGATGTTGGACGTGTATGGCTCGAAACA 8162 Query 22522 TTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGA 22581 |||||||| || || ||||||| |||||| || || ||||| || || | || | || Sbjct 8161 CTCATTGTTGCCGAGGATCTGAGAGGTCGAGGCCGTGGGCATGGGAGCAAGCAACAAGGA 8102 Query 22582 GTTTCTCAAGCCGTGCT--TTGAAATTTTACTC-TTGAGCATCGACCAGTCCCACAGATC 22638 ||| | | || |||| |||| ||| ||| || || | ||| |||||||| || Sbjct 8101 GTTGCGGATACCATGCTCCTTGA---TTTGCTCCTTCAGATTGTCCCATTCCCACAGTTC 8045 Query 22639 GGACGGCGTCACATTGTCCCACATATCGTATTGCA--ACACGCCGCGACTCGCCGGGCTG 22696 || ||| | || || |||||| || | || | | || | ||| || || Sbjct 8044 AGAAGGCTTGACGTT---CCACATGTCAAACTGGAGAATACCCTCCGAG--GCAGGTGAT 7990 Query 22697 CCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCG 22756 ||||| | || || ||||| | | |||||| || | ||| ||| | | Sbjct 7989 CCTTCAAAGGTGGAATAAGGACCCTGCTCCTTGGCAAGCTCCATGGACGCAGTCAAGGAG 7930 Query 22757 CCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGC----GGCGACGCTTTC 22812 ||| || | |||||||| || | ||||||||| || || || ||| || Sbjct 7929 GCGTGGTAGACGGTCTCGAAAATCTGCTTGTTCAACTCACGAGCCTCGGGTGAC----TC 7874 Query 22813 GTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGG 22872 | |||| ||| | | ||| ||||| || | ||||||||| || | |||||| || Sbjct 7873 AAAGGGCAGACGGAGAGCGAGGAAGGCGTCGGCAAGACCCTGAACACCGACACCGATGGG 7814 Query 22873 TCGGTTTTTCAGATTCGACACTTTTGC----CTCGGGCAAAGGATACCAATTCGAATCGA 22928 || || || || || |||| ||| ||| || || || |||| Sbjct 7813 TCTGTGGCGCATGTTG----CTGTTGCGAGCCTCCTGCACGGGGTAATGGTTGACGTCGA 7758 Query 22929 TTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGT 22988 | | |||| | ||| | | ||| | | || | | |||||| | Sbjct 7757 TGATCTTGTTTAGGTTGCGGACCACGACCTGAGTCACGTCATGCAGCTTCTGAAAGTCAT 7698 Query 22989 AAAC-GCCCGATTGTA--CAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGG 23045 | ||| ||||| ||||||| | ||||| ||| ||||| ||||| |||| Sbjct 7697 ATCGAGCCTCGTTGTAGTCAACAAAGGCAGGAAGGGCGAGCGAAGCAAGGTTGCAGACGG 7638 Query 23046 CCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCG 23105 |||||||||| || | ||| || | ||| || || || ||||| || | || | Sbjct 7637 CCACCTCGTCCGGGGCGGAGTATTCGATAATCTCCGTGCAGAGATTAGAACTTCTGATGG 7578 Query 23106 TGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCG 23165 | || | || |||||||||| || ||||| | |||||||||||||||| | || Sbjct 7577 TTCCTAGGTTCTTCTGGTTGCTCTTCTTGTTGCAAGCATCCTTGTAGAGCATGAAGGGGT 7518 Query 23166 TGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTC 23225 |||| ||||| ||| | || | || | ||| | |||| ||| | | ||| Sbjct 7517 TGCCGGTCTCAGTCTGAGCTTCCAAAATGGAGTACCAGAGCTTCTGGGCGCGGATG-GTC 7459 Query 23226 GCACGTACCT-GCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAA 23284 || ||| ||| || ||||||||||| ||||| || ||||| || |||| || Sbjct 7458 TTGCGACCCTTGCCCTCACGCTCGTACTTTTCGTACAGAGCCTCAAACTCCTCACCATAG 7399 Query 23285 CAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCA 23344 |||||||| |||||||| | | | |||||||||||| |||| || || || Sbjct 7398 CAGTCGGCAAGGCCGGGGCACTCATTGGGACACATGAGAGTCCAGTCGCCGTTCTTCTCG 7339 Query 23345 ACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACC 23404 || || |||| || ||||| || ||||| || ||| ||| || || || ||||| ||| Sbjct 7338 ACACGCTTCATGAAGAGATCAGGGATCCACAGGGCGAGGAAAAGGTCCCGCGCGCGAACC 7279 Query 23405 TCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGC 23464 ||||| |||||| |||||| | || | || || || || || || ||||| ||| Sbjct 7278 TCCTCCTTGCCGTGGTTCTTACGTAGGTCGAGGAACTCAAAGACATCAGCGTGCCAAGGC 7219 Query 23465 TCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCC 23524 || ||||| | |||||| || || |||| ||| ||||| ||||| || || || | |||| Sbjct 7218 TCCAGGTAGATGGCAAAGGCACCTGGTCGCTTGTTGCCACCCTGGTCTACATATCTGGCC 7159 Query 23525 GTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCC 23584 ||||||||| |||||| ||||| || | || || ||||| | ||| ||| || Sbjct 7158 GTGTTGTTGAACACTCGGAGCATGGGAATGACGCCATTGGAAGTACCGTTGGTGCCAGCA 7099 Query 23585 ACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTC 23644 | || || | || || | | ||| |||| || || ||||| || || ||| Sbjct 7098 ATGTATGAGCCAGTGGCACGGATGCGGTGGACGTTGAGGCCAATGCCGCCAGCCATTTTG 7039 Query 23645 GATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTC 23704 || ||||| ||||| || || ||||| |||||||||||||||||||| || || | Sbjct 7038 GAGATCATGGCGCAGGTCTTGAGCGTGTCATAGATGCCCTCGATGCTGTCATCCTTCATG 6979 Query 23705 GCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGG 23764 |||| | ||| || || |||| || || | ||| ||| | || ||| || ||||| Sbjct 6978 TCGACGAGGAAGCAGGATGACAGCTGGGCCTGGGGAGTACCAGCATTGAAAAGGGTCGGA 6919 Query 23765 CTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATG 23824 |||||| || ||| | | ||||| || |||||||| || ||| || |||||| Sbjct 6918 GAGGCGTGGGTGAAGAACTTGCTGGACATGAGGTTGTACGTTTCAATGACGCGCTCAATG 6859 Query 23825 TCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTG 23884 | || || || |||| ||||| ||||| ||||| | || |||| |||||| | Sbjct 6858 TTGTCGCCCCAGATGCCGACAGCGACACGCATAATCATATGCTGGGGTCGCTCGACAATC 6799 Query 23885 ACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAG 23944 |||||| | || | || || || || | || || || || ||||| || | || Sbjct 6798 TTGCCGTTGAGCTTCAGGAGGTACGATCGCTCCAGAGTCTTGAAGCCAAAGTACTGGTAA 6739 Query 23945 TTAAAGTCACGATCGTGCACTATGGCCGA 23973 || ||||| | |||| |||||||| || Sbjct 6738 TTGAAGTCTCTGTCGTAGACTATGGCAGA 6710 >seq1923 Length=107003 Score = 150 bits (166), Expect = 2e-31 Identities = 319/473 (67%), Gaps = 16/473 (3%) Strand=Plus/Minus Query 57963 TTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTT 58022 |||||| || | || |||| || ||||| || || || || ||||| ||| |||| Sbjct 7915 TTCGCCCAGCGATTAGTCGCCTTTGCCGCTGTTGAGGGCATCTTCTTCAGCGGCGCCTTT 7856 Query 58023 GCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAG 58082 || | || |||||| ||||||| || ||| |||||||||||||||| || ||||| Sbjct 7855 GCCTCCATCTTTTGGCTGAAGAAGCGGGGCTTGATGCCCGGCCTGACCTTCTCTAACGAA 7796 Query 58083 TTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATT 58142 | || ||||||||||||||||| || || || ||||| ||||| || |||| ||| | Sbjct 7795 CTCATCTCGCGCGACGAGGGTCTGCACACCGACTTTGCCTGCCTGCTGCACTCGCACCT- 7737 Query 58143 GTCAATAAACCGACGCGG------GATCGCATCTTGGACATTATCACCGAGGCGGTCGCG 58196 | |||| | | ||| |||| ||||| |||||||| || ||| | Sbjct 7736 ---GAAGCACCGTGCCAGCAAGCAGAT--CATCAAAGACATCATCACCGACGCCGTCACC 7682 Query 58197 ATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGAT 58256 ||||| | ||||| | ||||| || | ||| || | ||||| |||||| | | Sbjct 7681 ATCGAGCAGGAGTTCCTGACCGAGGCTTTGCCGTGTGCTCTACTCGGCATGAACGCTACT 7622 Query 58257 TTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACT--GATTGGAG 58314 ||||| |||||||||| || || || ||| | || || ||| || | ||| Sbjct 7621 CTGATGAAGCAGTACATTGAATTCGTCGCTGACCGCCTCCTGGTCGCTCTCGGCAACGAG 7562 Query 58315 AGCGTCATTACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCA 58374 | || ||||| ||| || || |||||||| ||| | ||||| || | |||| Sbjct 7561 AAGGT--GTACAAGACGGCCAACCCCTTTGATTTCATGGAAAACATCTCACTGGGTGGCA 7504 Query 58375 AGACAAACTTTTTCGaaaaaaaaGTTAGCGAATATCAAAAATACGGCGTGATG 58427 |||| ||||| || || || ||| |||| || || || ||| || ||| Sbjct 7503 AGACCAACTTCTTTGAGAAGCGAGTCGGCGAGTACCAGAAGGCCGGTGTCATG 7451 >seq1893 Length=9943 Score = 113 bits (124), Expect = 4e-20 Identities = 155/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| |||||||| ||||| || || ||||| || |||||| | || || || | || Sbjct 575 CATGCAGATTTTCGTGAAGACACTCACCGGCAAGACCATCACCCTTGAGGTCGAGTCATC 634 Query 31252 CGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 ||||| |||| | ||||| || ||| | ||||||||| ||| | || || |||| Sbjct 635 CGACACCATCGACAATGTCAAGTCAAAGATTCA-GGACAAGGAGGGCATCCCTCCGGACC 693 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATA 31370 ||||||| || || ||||||||||| || | ||||| ||| || ||| || | Sbjct 694 AGCAGCGACTGATTTTCGCTGGCAAGCAACTCGAAGATGGCCGTACTCTGTCCGACTACA 753 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||| || || ||||| || || ||||| || || Sbjct 754 ACATCCAGAAGGAATCTACGCTGCATCTCGTCCT 787 Score = 105 bits (116), Expect = 6e-18 Identities = 145/200 (73%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 31203 TCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCG 31262 |||| ||||| ||||| ||||| || || ||| |||| ||||| | ||||||| | | | Sbjct 889 TCGTCAAGACCCTGACTGGCAAGACCATTACCCTCGAGGTTGAGTCCTCCGACACTATTG 948 Query 31263 AAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTA 31321 | | ||||| || ||| | ||| |||||||| | || || |||||||| ||||| Sbjct 949 ACAACGTCAAGTCAAAGATTCA-GGATAAGGAAGGGATCCCTCCGGACCAGCAACGTCTG 1007 Query 31322 ATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAA 31381 || ||||||||||| || | ||||| || | ||| || ||||||||||| Sbjct 1008 ATTTTCGCTGGCAAGCAACTTGAAGATGGGCGCACCCTCTCCGACTACAACATTCAAAAG 1067 Query 31382 GAATCGACTCTTCATCTGGT 31401 ||||| || |||||| |||| Sbjct 1068 GAATCAACACTTCATTTGGT 1087 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||||||||| || || || |||||||||| || || ||| | || || ||| | Sbjct 1106 CATGCAAATTTTTGTCAAAACCTTGACAGGCAAGACAATTACCTTGGAGGTGGAATCCAG 1165 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | | || | ||||| | ||| || |||||||| | || || || || Sbjct 1166 TGATACTATTGACAACGTCAAGTCTAAAATTCAAGATAAGGAAGGTATTCCTCCGGATCA 1225 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| ||||| || || ||||| || ||||||||||| | ||| |||||||||| || Sbjct 1226 GCAACGTCTCATTTTTGCTGGAAAGCAGTTGGAAGATGGTCGCACTCTGAGCGATTACAA 1285 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || || || || || ||||| || ||| | ||| | || || Sbjct 1286 CATCCAGAAGGAGAGCACCCTGCATCTCGTTCTTCGCCTGCGTGGAGG 1333 >seq1745 Length=53961 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| || || ||||| || || ||||||||| |||| || || | Sbjct 17233 AAGATGCAGATCTTCGTCAAAACCCTGACGGGGAAGACGATCACCCTCGAGGTGGAGTCT 17174 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||||| | || | ||||| | || |||||||||||| | || || || Sbjct 17173 TCCGACACCATTGACAATGTCAAGTCCAAGATTCAGGACAAGGAAGGAATCCCCCCGGAT 17114 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||||| || || || |||||||||||| | || || || ||||||| || Sbjct 17113 CAGCAGCGACTCATCTTTGCTGGCAAACAGCTCGAGGATGGCCGCACCCTGAGCGACTAC 17054 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||||||| || || || || || |||| || ||||| | || || Sbjct 17053 AACATTCAGAAGGAGAGCACCCTCCACTTGGTGCTGCGACTGCGCGGGGG 17004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445755066389280