Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypocrella_20siamensis_20[genbank_20GCA_5F000731825.1_202014-07-18] 2,034 sequences; 28,856,456 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1793 208 1e-48 seq1923 96.9 4e-15 >seq1793 Length=11804 Score = 208 bits (230), Expect = 1e-48 Identities = 625/950 (66%), Gaps = 30/950 (3%) Strand=Plus/Minus Query 62949 GATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAA 63008 || || || || || ||||| ||||| | | | | |||| || ||||| ||||| Sbjct 7656 GAAGCAAGGTTGCAGACGGCCACCTCGTCCGGGGCGGAGTATTCGATAATCTCCGTGCAG 7597 Query 63009 AGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 63068 |||||| || |||| ||||||| || | || || ||||| ||||| || |||||| Sbjct 7596 AGATTAGAACTTCTGATGGTTCCTAGGTTCTTCTGGTTGCTCTTCTTGTTGCAAGCATCC 7537 Query 63069 TTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 63128 || || || ||||| || | || || ||| |||||| ||| | ||| | | ||||| | Sbjct 7536 TTGTAGAGCATGAAGGGGTTGCCGGTCTCAGTCTGAGCTTCCAAAATGGAGTACCAGA-G 7478 Query 63129 ACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTT----TCGTA--TAGAGTATAC 63182 || | | || | ||| | |||| | || ||||| | ||| | Sbjct 7477 CTTCTGGGCGCGG--ATGGTCTTGCGAC-CCTTGCCCTCACGCTCGTACTTTTCGTACAG 7421 Query 63183 AATCGTTCGAACTCGTCTCCCCAAA-CATTGTCCAAT-CTAGGACATTCATCCGGACACA 63240 | | || ||||| ||| ||| | || | ||| | || || |||| ||||||| Sbjct 7420 AGCC--TCAAACTC--CTCACCATAGCAGTCGGCAAGGCCGGGGCACTCATTGGGACACA 7365 Query 63241 TCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAG 63300 | | | ||| || |||| | || || || ||||| ||||||||||| ||||| || | Sbjct 7364 TGAGAGTCCAGTCGCCGTTCTTCTCGACACGCTTCATGAAGAGATCAGGGATCCACAGGG 7305 Query 63301 CTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGA 63360 | | || || || | | | | ||||| || || ||||| || ||||||| Sbjct 7304 CGAGGAAAAGGTCCCGCGCGCGAACCTCCTCCTTGCCGTGGTTCTTACGTAGGTCGAGGA 7245 Query 63361 ACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGT 63420 || | | | ||||| ||||| || |||| ||| ||||| | | || || || |||| Sbjct 7244 ACTCAAAGACATCAGCGTGCCAAGGCTCCAGGTAGATGGCAAAGGCACCTGGTCGCTTGT 7185 Query 63421 TTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATAC 63480 | || ||||| |||| ||||| || ||||| || | |||| | ||| ||||| | | Sbjct 7184 TGCCACCCTGGTCTACATATCTGGCCGTGTTGTTGAACACTCGGAGCATGGGAATGACGC 7125 Query 63481 CGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAAT--ATTACTAAT 63538 | || || |||| ||||| || | || || ||| ||||||| || | | Sbjct 7124 CATTGGAAGTACCGTTGGTGCCAGCAATGTATGAGCCAGTGGCACGGATGCGGTGGACGT 7065 Query 63539 TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATA 63598 || || || || || || |||||||| ||||| | ||||| || | ||||||||| Sbjct 7064 TG--AGGCCAATGCCGCCAGCCATTTTGGAGATCATGGCGCAGGTCTTGAGCGTGTCATA 7007 Query 63599 GATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACG 63658 |||||| || ||||| ||||| |||||| | || || ||| |||| ||| | Sbjct 7006 GATGCCCTCGATGCTGTCATCCTTCATGTCGACGAGGAAGCAGGATGACAGCTGGGCCTG 6947 Query 63659 AGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAG 63718 | ||| || ||||| || | ||| ||||| ||||| || || | || || | || Sbjct 6946 GGGAGTACCAGCATTGAAAAGGGTCGGAGAGGCGTGGGTGAAGAACTTGCTGGACATGAG 6887 Query 63719 ATTGTACGTCTCAAT----AGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACA 63773 |||||||| ||||| ||| | | | | || || |||| || || |||||| Sbjct 6886 GTTGTACGTTTCAATGACGCGCTCAATGT-TGTCGCCCCAGATG----CCGACAGCGACA 6832 Query 63774 CGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGAT 63833 ||||| | ||| ||||| |||| || ||||| ||| ||| | |||| | ||| ||| Sbjct 6831 CGCATAATCATATGCTGGGGTCGCTCGACAATCTTGCCGTTGAGCTTCAGGAGGTACGAT 6772 Query 63834 TTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTA 63883 |||| ||| || || ||||| || | ||| ||||||| ||||| Sbjct 6771 CGCTCCAGAGTCTTGAAGCCAAAGTACTGGTAATTGAAGTCTCTGTCGTA 6722 >seq1923 Length=107003 Score = 96.9 bits (106), Expect = 4e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || || || ||| ||||||||||||||| | || | ||||||||| || || || Sbjct 7755 CAGGCAAAGTCGGTGTGCAGACCCTCGTCGCGCGAGATGAGTTCGTTAGAGAAGGTCAGG 7814 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 |||||||| | ||| ||||| || |||||||| ||||| || || | ||| |||||| Sbjct 7815 CCGGGCATCAAGCCCCGCTTCTTCAGCCAAAAGATGGAGGCAAAGGCGCCGCTGAAGAAG 7874 Query 33702 ATTCCTTCTACTGCAGCAAAGGC 33724 || || || || || |||||||| Sbjct 7875 ATGCCCTCAACAGCGGCAAAGGC 7897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629801586887520