Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypocrella_20siamensis_20[genbank_20GCA_5F000731825.1_202014-07-18] 2,034 sequences; 28,856,456 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq1793 215 7e-51 >seq1793 Length=11804 Score = 215 bits (238), Expect = 7e-51 Identities = 623/947 (66%), Gaps = 24/947 (3%) Strand=Plus/Minus Query 65742 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAA 65801 || || || || || ||||| ||||| | | | | |||| || ||||| ||||| Sbjct 7656 GAAGCAAGGTTGCAGACGGCCACCTCGTCCGGGGCGGAGTATTCGATAATCTCCGTGCAG 7597 Query 65802 AGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 65861 |||||| || |||||||||||| || | || || ||||| ||||| || |||||| Sbjct 7596 AGATTAGAACTTCTGATGGTTCCTAGGTTCTTCTGGTTGCTCTTCTTGTTGCAAGCATCC 7537 Query 65862 TTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 65921 || || || ||||| || | || || ||| |||||| ||| | ||| | | ||||| | Sbjct 7536 TTGTAGAGCATGAAGGGGTTGCCGGTCTCAGTCTGAGCTTCCAAAATGGAGTACCAGA-G 7478 Query 65922 ACTCGAGCCTTTATTATAGATTTGTATCTCTTT---TCTCTTTCGTATAGTGTATACAAT 65978 || | | || | ||| | ||| || | ||||| | |||| Sbjct 7477 CTTCTGGGCGCGG--ATGGTCTTGCGACCCTTGCCCTCACGCTCGTACTTTTCGTACAGA 7420 Query 65979 CGTTCGAACTCGTCTCCCCAAA-CATTGTCCAAT-CCAGGACATTCATCCGGACACATCA 66036 || ||||| ||| ||| | || | ||| || || || |||| |||||||| | Sbjct 7419 GCCTCAAACTC--CTCACCATAGCAGTCGGCAAGGCCGGGGCACTCATTGGGACACATGA 7362 Query 66037 ACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTA 66096 | ||| || |||| | || || || ||||| ||||||||||| ||||| || || | Sbjct 7361 GAGTCCAGTCGCCGTTCTTCTCGACACGCTTCATGAAGAGATCAGGGATCCACAGGGCGA 7302 Query 66097 TAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACG 66156 || | || | | | | ||||| || || ||||| || ||||||||| Sbjct 7301 GGAAAAGGTCCCGCGCGCGAACCTCCTCCTTGCCGTGGTTCTTACGTAGGTCGAGGAACT 7242 Query 66157 CCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTC 66216 | | | |||| ||||| || |||| ||| ||||| | | || || || ||||| | Sbjct 7241 CAAAGACATCAGCGTGCCAAGGCTCCAGGTAGATGGCAAAGGCACCTGGTCGCTTGTTGC 7182 Query 66217 CTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCAT 66276 | ||||| |||| ||||| || ||||| || | |||| | ||| ||||| | |||| Sbjct 7181 CACCCTGGTCTACATATCTGGCCGTGTTGTTGAACACTCGGAGCATGGGAATGACGCCAT 7122 Query 66277 TGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAA--TTGA 66334 |||| ||||| ||||| || | || || ||| | ||||| || | |||| Sbjct 7121 TGGAAGTACCGTTGGTGCCAGCAATGTATGAGCCAGTGGCACGGATGCGGTGGACGTTGA 7062 Query 66335 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 66394 | || || || || |||||||| ||||| | ||||| || | ||| |||||||| Sbjct 7061 --GGCCAATGCCGCCAGCCATTTTGGAGATCATGGCGCAGGTCTTGAGCGTGTCATAGAT 7004 Query 66395 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT 66454 |||||| || || |||||| |||||| | || || ||| |||| ||| | Sbjct 7003 GCCCTCGATGCTGTCATCCTTCATGTCGACGAGGAAGCAGGATGACAGCTGGGCCTGGGG 6944 Query 66455 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 66514 ||| || ||||| || | ||| ||||| ||||| || || | || || | || || Sbjct 6943 AGTACCAGCATTGAAAAGGGTCGGAGAGGCGTGGGTGAAGAACTTGCTGGACATGAGGTT 6884 Query 66515 GTACGTCTCAAT----AGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGC 66569 |||||| ||||| ||| | | | | || || |||| || || ||||||||| Sbjct 6883 GTACGTTTCAATGACGCGCTCAATGT-TGTCGCCCCAGATG----CCGACAGCGACACGC 6829 Query 66570 ATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTT 66629 || | ||| ||||| |||| || || |||||| ||| | |||| | ||| ||| Sbjct 6828 ATAATCATATGCTGGGGTCGCTCGACAATCTTGCCGTTGAGCTTCAGGAGGTACGATCGC 6769 Query 66630 TCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTA 66676 |||| ||| || || ||||| || | ||| ||||||| ||||| Sbjct 6768 TCCAGAGTCTTGAAGCCAAAGTACTGGTAATTGAAGTCTCTGTCGTA 6722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658156065956560