Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypocrella_20siamensis_20[genbank_20GCA_5F000731825.1_202014-07-18] 2,034 sequences; 28,856,456 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq1745 113 4e-20 seq1893 109 5e-19 >seq1745 Length=53961 Score = 113 bits (124), Expect = 4e-20 Identities = 156/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||| || ||||| | || ||| || |||||||| || ||||||| |||| Sbjct 17016 CGCAGCACCAAGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCGCTCAGGGTGCGGCCA 17075 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 || ||||||||||| |||||| |||| || || |||||||| || || || ||||| ||| Sbjct 17076 TCCTCGAGCTGTTTGCCAGCAAAGATGAGTCGCTGCTGATCCGGGGGGATTCCTTCCTTG 17135 Query 139670 TCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 || ||| | || | || | | || | ||||||| | ||||||||| | ||| | Sbjct 17136 TC-CTGAATCTTGGACTTGACATTGTCAATGGTGTCGGAAGACTCCACCTCGAGGGTGAT 17194 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||| || |||| ||||| ||||| || ||||| Sbjct 17195 CGTCTTCCCCGTCAGGGTTTTGACGAAGATCTGCAT 17230 >seq1893 Length=9943 Score = 109 bits (120), Expect = 5e-19 Identities = 159/222 (72%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| ||||| | |||||| || || |||| || || || ||||||||||| || ||| Sbjct 1106 GCCACCTCGGAGACGCAACACCAAATGAAGTGTTGATTCCTTTTGAATGTTGTAGTCGGA 1047 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| | ||||| || || || ||||| | |||||||||||||| || ||||| Sbjct 1046 GAGGGTGCGCCCATCTTCAAGTTGCTTGCCAGCGAAAATCAGACGTTGCTGGTCCGGAGG 987 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 || ||||| || || ||| | |||| || | | || | ||||||| || ||| | Sbjct 986 GATCCCTTCCTTATC-CTGAATCTTTGACTTGACGTTGTCAATAGTGTCGGAGGACTCAA 928 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATA 139757 |||| | ||| | |||||||| |||| || || |||| || Sbjct 927 CCTCGAGGGTAATGGTCTTGCCAGTCAGGGTCTTGACGACTA 886 Score = 107 bits (118), Expect = 2e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 139573 CTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATA 139632 ||| || || ||||| |||||||||| |||| ||||| | ||| || |||||| | Sbjct 1298 CTCCTTCTGGATGTTGTAATCGCTCAGAGTGCGACCATCTTCCAACTGCTTTCCAGCAAA 1239 Query 139633 GATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCT 139691 || |||||||||||||| ||||| || ||||| || || ||| |||| | || | | Sbjct 1238 AATGAGACGTTGCTGATCCGGAGGAATACCTTCCTTATC-TTGAATTTTAGACTTGACGT 1180 Query 139692 GTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTA 139751 || | || || ||| |||||||| | ||| | |||||||| ||||| ||||| | Sbjct 1179 TGTCAATAGTATCACTGGATTCCACCTCCAAGGTAATTGTCTTGCCTGTCAAGGTTTTGA 1120 Query 139752 CGAATATTTGCAT 139764 | || |||||||| Sbjct 1119 CAAAAATTTGCAT 1107 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||||| || | || | |||||| || || || ||||| || ||| Sbjct 803 GCCACCCCGAAGACGCAGGACGAGATGCAGCGTAGATTCCTTCTGGATGTTGTAGTCGGA 744 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || || | |||||||| || || ||||| | ||||| || ||||| || ||||| Sbjct 743 CAGAGTACGGCCATCTTCGAGTTGCTTGCCAGCGAAAATCAGTCGCTGCTGGTCCGGAGG 684 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTCCA 139715 ||||| || ||||| ||| | |||| || | | || | ||||||| | ||| | Sbjct 683 GATGCCCTCCTTGTCC-TGAATCTTTGACTTGACATTGTCGATGGTGTCGGATGACTCGA 625 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||| ||| | ||||||||||| | || || ||||| || ||||| Sbjct 624 CCTCAAGGGTGATGGTCTTGCCGGTGAGTGTCTTCACGAAAATCTGCAT 576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496051387572800