Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypocrella_20siamensis_20[genbank_20GCA_5F000731825.1_202014-07-18]
2,034 sequences; 28,856,456 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq1793 233 3e-56
seq1923 109 8e-19
>seq1793
Length=11804
Score = 233 bits (258), Expect = 3e-56
Identities = 633/955 (66%), Gaps = 28/955 (3%)
Strand=Plus/Minus
Query 79615 GCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCA 79674
|||| || || || || || ||||| ||||| | | | | |||| || || ||
Sbjct 7662 GCGAGCGAAGCAAGGTTGCAGACGGCCACCTCGTCCGGGGCGGAGTATTCGATAATCTCC 7603
Query 79675 GTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 79734
|||||||| ||| || | |||||||||| || | || || ||||| ||||| ||
Sbjct 7602 GTGCAGAGATTAGAACTTCTGATGGTTCCTAGGTTCTTCTGGTTGCTCTTCTTGTTGCAA 7543
Query 79735 GCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC 79794
|||||||| || || ||||| || | || || ||| |||||| ||| | ||| | | |
Sbjct 7542 GCATCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCAGTCTGAGCTTCCAAAATGGAGTAC 7483
Query 79795 CAGACGACTCGAGCCTTTATTATAGACTTGTATCTCTTT---TCTCTTTCGTATTGT--G 79849
|||| | || | | || | |||| | ||| || | ||||| | | |
Sbjct 7482 CAGA-GCTTCTGGGCGCGG--ATGGTCTTGCGACCCTTGCCCTCACGCTCGTACTTTTCG 7426
Query 79850 TATATAATCGTTCGAACTCGTCTCCCCAAA-CA-TCGTCTAATCCAGGACATTCGTCAGG 79907
|| | | | || ||||| ||| ||| | || ||| | | || || || || | ||
Sbjct 7425 TACAGAGCC--TCAAACTC--CTCACCATAGCAGTCGGCAAGGCCGGGGCACTCATTGGG 7370
Query 79908 ACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCA 79967
|||||| | | ||| || || | | || || || ||||| ||||||||||| |||||
Sbjct 7369 ACACATGAGAGTCCAGTCGCCGTTCTTCTCGACACGCTTCATGAAGAGATCAGGGATCCA 7310
Query 79968 AAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATC 80027
|| || | || || || | | | | |||||| || || ||||| || ||
Sbjct 7309 CAGGGCGAGGAAAAGGTCCCGCGCGCGAACCTCCTCCTTGCCGTGGTTCTTACGTAGGTC 7250
Query 80028 GAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCG 80087
||||||| | | | ||||| ||||| || |||| ||| ||||| | | || |||||
Sbjct 7249 GAGGAACTCAAAGACATCAGCGTGCCAAGGCTCCAGGTAGATGGCAAAGGCACCTGGTCG 7190
Query 80088 TTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAAT 80147
||||| || ||||| |||| ||||| || ||||| || | |||| | ||| |||||
Sbjct 7189 CTTGTTGCCACCCTGGTCTACATATCTGGCCGTGTTGTTGAACACTCGGAGCATGGGAAT 7130
Query 80148 AATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTA 80205
| |||||||| ||||| ||||| || | || || ||| ||||||| || |
Sbjct 7129 GACGCCATTGGAAGTACCGTTGGTGCCAGCAATGTATGAGCCAGTGGCACGGATGCGGTG 7070
Query 80206 CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTA 80265
||| || || || || || |||||||| ||||| | ||||| || | |||
Sbjct 7069 GACGTTG--AGGCCAATGCCGCCAGCCATTTTGGAGATCATGGCGCAGGTCTTGAGCGTG 7012
Query 80266 TCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGG 80325
|||||||||||||| ||||| ||||| |||||| | || || ||| |||| |||
Sbjct 7011 TCATAGATGCCCTCGATGCTGTCATCCTTCATGTCGACGAGGAAGCAGGATGACAGCTGG 6952
Query 80326 TGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAC 80385
| ||| || ||||| || | ||| ||||| ||||| || || | || |||
Sbjct 6951 GCCTGGGGAGTACCAGCATTGAAAAGGGTCGGAGAGGCGTGGGTGAAGAACTTGCTGGAC 6892
Query 80386 AGTAGATTGTACGTCTCAAT----AGCTGATTCTATATC-CCATTGATGAATTCCTACCG 80440
| || |||||||| ||||| ||| | | | | || || |||| || || |
Sbjct 6891 ATGAGGTTGTACGTTTCAATGACGCGCTCAATGT-TGTCGCCCCAGATG----CCGACAG 6837
Query 80441 CGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGT 80500
|||||||||| | ||| ||||| |||| || || |||||| || | |||| | ||
Sbjct 6836 CGACACGCATAATCATATGCTGGGGTCGCTCGACAATCTTGCCGTTGAGCTTCAGGAGGT 6777
Query 80501 AAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTA 80555
| ||| |||| ||| || || ||||| || | ||| ||||||| |||||
Sbjct 6776 ACGATCGCTCCAGAGTCTTGAAGCCAAAGTACTGGTAATTGAAGTCTCTGTCGTA 6722
>seq1923
Length=107003
Score = 109 bits (120), Expect = 8e-19
Identities = 150/209 (72%), Gaps = 3/209 (1%)
Strand=Plus/Plus
Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019
|| || || ||| ||||||||||||||| | || |||||||| || || || ||
Sbjct 7755 CAGGCAAAGTCGGTGTGCAGACCCTCGTCGCGCGAGATGAGTTCGTTAGAGAAGGTCAGG 7814
Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079
|||||||| | ||| ||||| || |||||||| ||||| ||||| | || ||||||
Sbjct 7815 CCGGGCATCAAGCCCCGCTTCTTCAGCCAAAAGATGGAGGCAAAGGCGCCGCTGAAGAAG 7874
Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG---CGCTGTCATGT 50136
|| || || || ||||||||||| || | || || | | |||| | |||| ||
Sbjct 7875 ATGCCCTCAACAGCGGCAAAGGCGACTAATCGCTGGGCGAAGCTGGATTCCTTGTCCTGA 7934
Query 50137 ATCCACTTTTGAGCCCAATCGGCCTTCTT 50165
||||| | |||||| || ||||||||
Sbjct 7935 ATCCAGTGAATAGCCCAGTCCGCCTTCTT 7963
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718250538015760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |