Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypocrella_20siamensis_20[genbank_20GCA_5F000731825.1_202014-07-18] 2,034 sequences; 28,856,456 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1793 233 3e-56 seq1923 109 8e-19 >seq1793 Length=11804 Score = 233 bits (258), Expect = 3e-56 Identities = 633/955 (66%), Gaps = 28/955 (3%) Strand=Plus/Minus Query 79615 GCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCA 79674 |||| || || || || || ||||| ||||| | | | | |||| || || || Sbjct 7662 GCGAGCGAAGCAAGGTTGCAGACGGCCACCTCGTCCGGGGCGGAGTATTCGATAATCTCC 7603 Query 79675 GTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 79734 |||||||| ||| || | |||||||||| || | || || ||||| ||||| || Sbjct 7602 GTGCAGAGATTAGAACTTCTGATGGTTCCTAGGTTCTTCTGGTTGCTCTTCTTGTTGCAA 7543 Query 79735 GCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC 79794 |||||||| || || ||||| || | || || ||| |||||| ||| | ||| | | | Sbjct 7542 GCATCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCAGTCTGAGCTTCCAAAATGGAGTAC 7483 Query 79795 CAGACGACTCGAGCCTTTATTATAGACTTGTATCTCTTT---TCTCTTTCGTATTGT--G 79849 |||| | || | | || | |||| | ||| || | ||||| | | | Sbjct 7482 CAGA-GCTTCTGGGCGCGG--ATGGTCTTGCGACCCTTGCCCTCACGCTCGTACTTTTCG 7426 Query 79850 TATATAATCGTTCGAACTCGTCTCCCCAAA-CA-TCGTCTAATCCAGGACATTCGTCAGG 79907 || | | | || ||||| ||| ||| | || ||| | | || || || || | || Sbjct 7425 TACAGAGCC--TCAAACTC--CTCACCATAGCAGTCGGCAAGGCCGGGGCACTCATTGGG 7370 Query 79908 ACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCA 79967 |||||| | | ||| || || | | || || || ||||| ||||||||||| ||||| Sbjct 7369 ACACATGAGAGTCCAGTCGCCGTTCTTCTCGACACGCTTCATGAAGAGATCAGGGATCCA 7310 Query 79968 AAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATC 80027 || || | || || || | | | | |||||| || || ||||| || || Sbjct 7309 CAGGGCGAGGAAAAGGTCCCGCGCGCGAACCTCCTCCTTGCCGTGGTTCTTACGTAGGTC 7250 Query 80028 GAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCG 80087 ||||||| | | | ||||| ||||| || |||| ||| ||||| | | || ||||| Sbjct 7249 GAGGAACTCAAAGACATCAGCGTGCCAAGGCTCCAGGTAGATGGCAAAGGCACCTGGTCG 7190 Query 80088 TTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAAT 80147 ||||| || ||||| |||| ||||| || ||||| || | |||| | ||| ||||| Sbjct 7189 CTTGTTGCCACCCTGGTCTACATATCTGGCCGTGTTGTTGAACACTCGGAGCATGGGAAT 7130 Query 80148 AATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTA 80205 | |||||||| ||||| ||||| || | || || ||| ||||||| || | Sbjct 7129 GACGCCATTGGAAGTACCGTTGGTGCCAGCAATGTATGAGCCAGTGGCACGGATGCGGTG 7070 Query 80206 CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTA 80265 ||| || || || || || |||||||| ||||| | ||||| || | ||| Sbjct 7069 GACGTTG--AGGCCAATGCCGCCAGCCATTTTGGAGATCATGGCGCAGGTCTTGAGCGTG 7012 Query 80266 TCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGG 80325 |||||||||||||| ||||| ||||| |||||| | || || ||| |||| ||| Sbjct 7011 TCATAGATGCCCTCGATGCTGTCATCCTTCATGTCGACGAGGAAGCAGGATGACAGCTGG 6952 Query 80326 TGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAC 80385 | ||| || ||||| || | ||| ||||| ||||| || || | || ||| Sbjct 6951 GCCTGGGGAGTACCAGCATTGAAAAGGGTCGGAGAGGCGTGGGTGAAGAACTTGCTGGAC 6892 Query 80386 AGTAGATTGTACGTCTCAAT----AGCTGATTCTATATC-CCATTGATGAATTCCTACCG 80440 | || |||||||| ||||| ||| | | | | || || |||| || || | Sbjct 6891 ATGAGGTTGTACGTTTCAATGACGCGCTCAATGT-TGTCGCCCCAGATG----CCGACAG 6837 Query 80441 CGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGT 80500 |||||||||| | ||| ||||| |||| || || |||||| || | |||| | || Sbjct 6836 CGACACGCATAATCATATGCTGGGGTCGCTCGACAATCTTGCCGTTGAGCTTCAGGAGGT 6777 Query 80501 AAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTA 80555 | ||| |||| ||| || || ||||| || | ||| ||||||| ||||| Sbjct 6776 ACGATCGCTCCAGAGTCTTGAAGCCAAAGTACTGGTAATTGAAGTCTCTGTCGTA 6722 >seq1923 Length=107003 Score = 109 bits (120), Expect = 8e-19 Identities = 150/209 (72%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || || || ||| ||||||||||||||| | || |||||||| || || || || Sbjct 7755 CAGGCAAAGTCGGTGTGCAGACCCTCGTCGCGCGAGATGAGTTCGTTAGAGAAGGTCAGG 7814 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079 |||||||| | ||| ||||| || |||||||| ||||| ||||| | || |||||| Sbjct 7815 CCGGGCATCAAGCCCCGCTTCTTCAGCCAAAAGATGGAGGCAAAGGCGCCGCTGAAGAAG 7874 Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG---CGCTGTCATGT 50136 || || || || ||||||||||| || | || || | | |||| | |||| || Sbjct 7875 ATGCCCTCAACAGCGGCAAAGGCGACTAATCGCTGGGCGAAGCTGGATTCCTTGTCCTGA 7934 Query 50137 ATCCACTTTTGAGCCCAATCGGCCTTCTT 50165 ||||| | |||||| || |||||||| Sbjct 7935 ATCCAGTGAATAGCCCAGTCCGCCTTCTT 7963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718250538015760