Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypocrella_20siamensis_20[genbank_20GCA_5F000731825.1_202014-07-18] 2,034 sequences; 28,856,456 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1793 244 1e-59 seq1923 95.1 2e-14 >seq1793 Length=11804 Score = 244 bits (270), Expect = 1e-59 Identities = 632/949 (67%), Gaps = 28/949 (3%) Strand=Plus/Minus Query 71704 GATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAA 71763 || || || || || ||||| ||||| | | ||| |||| ||||| || ||||| Sbjct 7656 GAAGCAAGGTTGCAGACGGCCACCTCGTCCGGGGCGGAGTATTCGATAATCTCCGTGCAG 7597 Query 71764 AGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 71823 |||||| || |||||||||||| || | || || ||||| ||||| || |||||| Sbjct 7596 AGATTAGAACTTCTGATGGTTCCTAGGTTCTTCTGGTTGCTCTTCTTGTTGCAAGCATCC 7537 Query 71824 TTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 71883 || || || || || || | || || ||| |||||| ||| | ||| | | ||||| | Sbjct 7536 TTGTAGAGCATGAAGGGGTTGCCGGTCTCAGTCTGAGCTTCCAAAATGGAGTACCAGA-G 7478 Query 71884 ACTCGAGCCTTTATTATATTCTTGTATCTCTTT---TCTCTTTCGTATTGT--GTATATA 71938 || | | || ||||| | ||| || | ||||| | | ||| | | Sbjct 7477 CTTCTGGGCGCGG--ATGGTCTTGCGACCCTTGCCCTCACGCTCGTACTTTTCGTACAGA 7420 Query 71939 ATCGTTCGAACTCGTCTCCCCA-AGCATT-GTCTAATCCAGGACATTCATTCGGACACAT 71996 | || ||||| ||| ||| |||| | | | | || || || ||||| |||||||| Sbjct 7419 GCC--TCAAACTC--CTCACCATAGCAGTCGGCAAGGCCGGGGCACTCATTGGGACACAT 7364 Query 71997 CAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC 72056 | | ||| || || | | | || || ||||| ||||||||||| ||||| || || Sbjct 7363 GAGAGTCCAGTCGCCGTTCTTCTCGACACGCTTCATGAAGAGATCAGGGATCCACAGGGC 7304 Query 72057 TATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAA 72116 | || || || | | | | |||||| || || ||||| || |||||||| Sbjct 7303 GAGGAAAAGGTCCCGCGCGCGAACCTCCTCCTTGCCGTGGTTCTTACGTAGGTCGAGGAA 7244 Query 72117 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTT 72176 | | | | ||||| ||||| || |||| ||| ||||| | | || || || ||||| Sbjct 7243 CTCAAAGACATCAGCGTGCCAAGGCTCCAGGTAGATGGCAAAGGCACCTGGTCGCTTGTT 7184 Query 72177 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 72236 || ||||| |||| ||||| || ||||| || | |||| | ||| ||||| | || Sbjct 7183 GCCACCCTGGTCTACATATCTGGCCGTGTTGTTGAACACTCGGAGCATGGGAATGACGCC 7124 Query 72237 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTGCTAATT 72294 |||||| | ||| ||||| || | || || ||| ||||||| || || || Sbjct 7123 ATTGGAAGTACCGTTGGTGCCAGCAATGTATGAGCCAGTGGCACGGATGCGGTGGACGTT 7064 Query 72295 GATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAG 72354 | || || || || || |||||||| ||||| | ||||| || | ||| |||||| Sbjct 7063 G--AGGCCAATGCCGCCAGCCATTTTGGAGATCATGGCGCAGGTCTTGAGCGTGTCATAG 7006 Query 72355 ATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGA 72414 |||||||| || || |||||| |||||| | || || ||| |||| ||| | Sbjct 7005 ATGCCCTCGATGCTGTCATCCTTCATGTCGACGAGGAAGCAGGATGACAGCTGGGCCTGG 6946 Query 72415 CTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGA 72474 ||| || ||||| || | ||| ||||| ||||| || || | || |||| || Sbjct 6945 GGAGTACCAGCATTGAAAAGGGTCGGAGAGGCGTGGGTGAAGAACTTGCTGGACATGAGG 6886 Query 72475 TTGTACGTCTCAAT----AGCTGATTCTATATC-CCATTGATGTATTCCTACCGCGACAC 72529 |||||||| ||||| ||| | | | | || || |||| || || ||||||| Sbjct 6885 TTGTACGTTTCAATGACGCGCTCAATGT-TGTCGCCCCAGATG----CCGACAGCGACAC 6831 Query 72530 GCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATT 72589 |||| | ||||||||| |||| || || |||||| || | |||| | ||| ||| Sbjct 6830 GCATAATCATATGCTGGGGTCGCTCGACAATCTTGCCGTTGAGCTTCAGGAGGTACGATC 6771 Query 72590 TTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTA 72638 |||| ||| || || ||||| || | ||| ||||||| ||||| Sbjct 6770 GCTCCAGAGTCTTGAAGCCAAAGTACTGGTAATTGAAGTCTCTGTCGTA 6722 >seq1923 Length=107003 Score = 95.1 bits (104), Expect = 2e-14 Identities = 194/286 (68%), Gaps = 7/286 (2%) Strand=Plus/Plus Query 42335 TATGTATCGATCA--AAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAA 42392 ||||| ||||||| || || ||| | || || || ||||| || || ||||||| Sbjct 8104 TATGTGTCGATCAGCAACGAGTATG--TCTCAGAGTGGATGTTCTCCATCATGATCTGAA 8161 Query 42393 ATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAAT 42452 | |||||||| |||| ||| || | |||||| || || | ||||| || | | | Sbjct 8162 ACCCGTAGAAGCATCGGGCTTCTGGAACCTGAACCTCGCCGCTGAATCGCTCTACCAGGT 8221 Query 42453 TTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATT 42512 | ||||| || || |||||| ||| ||||| || |||| | || || || |||| Sbjct 8222 TCTCGTTGACGATGCCGTCAGAGGCGGCAAAGAAAGCCAGGATGTGAGAGATGAAGTATT 8281 Query 42513 TTTCGTCCGGTGTTAAT---TTATTCCAATCATTGATATCTTTAGATATATCTACTTCTT 42569 | ||||| | ||| ||||||||||| | | ||| || || | ||| | |||| Sbjct 8282 TCTCGTCATCATTCAATCGATTATTCCAATCGTGCAGATCCTTTGAGAGATCAATCTCTT 8341 Query 42570 CTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGAT 42615 | | ||||| || || || || || || || ||||| | ||| || Sbjct 8342 CGGCTGTCCAGAAGGAGGCCTCGGCTTTCTTGTACATTTGCCAAAT 8387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671122136285840