Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypocrella_20siamensis_20[genbank_20GCA_5F000731825.1_202014-07-18]
2,034 sequences; 28,856,456 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq1923 158 2e-33
seq1793 147 3e-30
seq1154 86.0 9e-12
>seq1923
Length=107003
Score = 158 bits (174), Expect = 2e-33
Identities = 207/287 (72%), Gaps = 0/287 (0%)
Strand=Plus/Minus
Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078
|||||| |||||||||| || || |||||||||| ||||| | ||||||| | |||||
Sbjct 8387 ATTTGGCAAATGTACAAGAAAGCCGAGGCCTCCTTCTGGACAGCCGAAGAGATTGATCTC 8328
Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138
|| ||||| ||| |||||||| | | ||| |||| ||| ||| | | || || ||
Sbjct 8327 TCAAAGGATCTGCACGATTGGAATAATCGATTGAATGATGACGAGAAATACTTCATCTCT 8268
Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198
||||| |||| |||||||||| ||| || || ||||||||||| || ||| | |||
Sbjct 8267 CACATCCTGGCTTTCTTTGCCGCCTCTGACGGCATCGTCAACGAGAACCTGGTAGAGCGA 8208
Query 125199 TTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATT 125258
||| ||| | ||||||| | ||||| ||||| || || ||||||||
Sbjct 8207 TTCAGCGGCGAGGTTCAGGTTCCAGAAGCCCGATGCTTCTACGGGTTTCAGATCATGATG 8148
Query 125259 GAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACAT 125305
|||||| | ||||| || | ||||| ||||| |||| |||||
Sbjct 8147 GAGAACATCCACTCTGAGACATACTCGTTGCTGATCGACACATACAT 8101
Score = 122 bits (134), Expect = 1e-22
Identities = 349/527 (66%), Gaps = 25/527 (5%)
Strand=Plus/Minus
Query 125352 GTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCT 125411
|| || | ||| || || ||||| | |||| |||| ||||| | ||| | | ||
Sbjct 7978 GTTCCCTGTATTCGCAAGAAGGCGGACTGGGCTATTCACTGGATTCAGGACAAGGAATCC 7919
Query 125412 TCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGT 125471
| |||| | || | || || || ||||| || |||||||||||||| ||
Sbjct 7918 AGCTTCGCCCAGCGATTAGTCGCCTTTGCCGCTGTTGAGGGCATCTTCTTCAGCGGCGCC 7859
Query 125472 TTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAAC 125531
||||| ||||||||||||| |||||||| || | |||||||| ||||| | ||||
Sbjct 7858 TTTGCCTCCATCTTTTGGCTGAAGAAGCGGGGCTTGATGCCCGGCCTGACCTTCTCTAAC 7799
Query 125532 GAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTG-TTTCGCAA 125590
|| | || || || |||||||| || ||| ||||||||| || ||| |||||
Sbjct 7798 GAACTCATCTCGCGCGACGAGGGTCTGCACACCGACTTTGCCTGCCTGCTGCACTCGCAC 7739
Query 125591 CT--ATCTGCGT-CCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGA 125647
|| | | ||| || | ||||||| || ||| | ||||| | |||||
Sbjct 7738 CTGAAGCACCGTGCCAGCAAGCAGATC-----ATCAAA--GACATCA------TCACCGA 7692
Query 125648 TGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGC-ATGATTGGCA 125706
||||| | || || || ||||| || ||||| | | || || || | | ||||
Sbjct 7691 CGCCGTCACCATCGAGCAGGAGTTCCTGACCGAGGCTTTGCC-GTGTGCTCTACTCGGCA 7633
Query 125707 TGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGT 125766
||||| | || ||| ||||||| || || || || || || || ||| ||
Sbjct 7632 TGAACGCTACTCTGATGAAGCAGTACATTGAATTCGTCGCTGACCGCCTCCTGGTCG--- 7576
Query 125767 TGATTGGC--CG-CAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATAT 125823
| ||| || ||| | ||||| | || ||||||||||||||| | ||| |
Sbjct 7575 CTCTCGGCAACGAGAAGGTGTACAAGACGGCCAACCCCTTTGATTTCATGGAAAACATCT 7516
Query 125824 CACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870
|||| | || ||||||||||| || |||||| ||| ||||||||
Sbjct 7515 CACTGGGTGGCAAGACCAACTTCTTTGAGAAGCGAGTCGGCGAGTAC 7469
>seq1793
Length=11804
Score = 147 bits (162), Expect = 3e-30
Identities = 361/542 (67%), Gaps = 4/542 (1%)
Strand=Plus/Plus
Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGA 96866
|| ||||| | ||| |||| | | || |||||| || ||| ||| | | | ||
Sbjct 7106 ACCAACGGTACTTCCAATGGCGTCATTCCCATGCTCCGAGTGTTCAACAACACGGCCAGA 7165
Query 96867 TACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGG 96926
|| || ||||| ||||| || || ||||| || | ||| ||||| |||| ||||||
Sbjct 7166 TATGTAGACCAGGGTGGCAACAAGCGACCAGGTGCCTTTGCCATCTACCTGGAGCCTTGG 7225
Query 96927 CACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGA 96986
||||| || || ||||| || |||| | || || ||| ||| || |||| ||
Sbjct 7226 CACGCTGATGTCTTTGAGTTCCTCGACCTACGTAAGAACCACGGCAAGGAGGAGGTTCGC 7285
Query 96987 GCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGAC 97046
|| ||||| | || || || ||| | || ||| | ||||||||||| ||| | |
Sbjct 7286 GCGCGGGACCTTTTCCTCGCCCTGTGGATCCCTGATCTCTTCATGAAGCGTGTCGAGAAG 7345
Query 97047 GGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGC 97106
||| |||||| || ||||| ||| | || ||||| || |||| |||| ||
Sbjct 7346 AACGGCGACTGGACTCTCATGTGTCCCAATGAGTGCCCCGGCCTTGCCGACTGCTATGGT 7405
Query 97107 GAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGC-CGATACGTGAGACGAGT 97165
|| ||||||||||| |||| ||||||| |||||| | || |||| | |
Sbjct 7406 GAGGAGTTTGAGGCTCTGTACGAAAAGTACGAGCGTGAGGGCAAGGGTCGCAAGACCA-T 7464
Query 97166 CGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGT 97224
| || | |||| || ||| | |||| || |||||| ||||| || | || |
Sbjct 7465 CCGCGC-CCAGAAGCTCTGGTACTCCATTTTGGAAGCTCAGACTGAGACCGGCAACCCCT 7523
Query 97225 ACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCA 97284
||| |||||||||||| | || || |||||||| || | || |||||||
Sbjct 7524 TCATGCTCTACAAGGATGCTTGCAACAAGAAGAGCAACCAGAAGAACCTAGGAACCATCA 7583
Query 97285 AGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTT 97344
| || ||||| |||||||| ||| | || ||| || | ||||||||| ||| || |
Sbjct 7584 GAAGTTCTAATCTCTGCACGGAGATTATCGAATACTCCGCCCCGGACGAGGTGGCCGTCT 7643
Query 97345 GC 97346
||
Sbjct 7644 GC 7645
>seq1154
Length=35070
Score = 86.0 bits (94), Expect = 9e-12
Identities = 167/241 (69%), Gaps = 7/241 (3%)
Strand=Plus/Minus
Query 70067 GGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGAC 70126
|| ||||| || || |||||||| ||||| ||| | || | ||| || |||| || ||
Sbjct 3288 GGGGATCTTGGACCCGTGTACGGCTTCCAATGGCGCCATTTTGGCGCCGAGTACGTCGA- 3230
Query 70127 TGCGA-GACAGACTATTCGGGTCAGGGTGTTGATCAATT-GCAGACAATCATTGACACTC 70184
||| | ||| || || | || |||| || ||||| | || || | || |||| |
Sbjct 3229 TGCAAAGACGGATTACACTGGCAAGGGCGTCGATCAGCTCGCCGAGG-TAATCGACAAGC 3171
Query 70185 TCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGC 70244
||| | ||| || ||| |||| ||| | ||| || | ||||| | ||||||||
Sbjct 3170 TCAGAAACAAGCCGTACGATCGGAGAATCATCATGAGCGCGTGGAACGCGCGAGATTTGC 3111
Query 70245 ACCAAATGGCACTACCACCGTGTCACTGTTTGGCTCAGTTTTA---CTCGTACGATGGCA 70301
||| ||||| | || ||||||||| || ||||||||||| ||||||| ||||
Sbjct 3110 ACCTCATGGCGTTGCCGCCGTGTCACGTCTTTGCTCAGTTTTACGTCTCGTACCCGGGCA 3051
Query 70302 A 70302
|
Sbjct 3050 A 3050
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741040358569840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |