Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypocrella_20siamensis_20[genbank_20GCA_5F000731825.1_202014-07-18] 2,034 sequences; 28,856,456 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1923 158 2e-33 seq1793 147 3e-30 seq1154 86.0 9e-12 >seq1923 Length=107003 Score = 158 bits (174), Expect = 2e-33 Identities = 207/287 (72%), Gaps = 0/287 (0%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 |||||| |||||||||| || || |||||||||| ||||| | ||||||| | ||||| Sbjct 8387 ATTTGGCAAATGTACAAGAAAGCCGAGGCCTCCTTCTGGACAGCCGAAGAGATTGATCTC 8328 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 || ||||| ||| |||||||| | | ||| |||| ||| ||| | | || || || Sbjct 8327 TCAAAGGATCTGCACGATTGGAATAATCGATTGAATGATGACGAGAAATACTTCATCTCT 8268 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198 ||||| |||| |||||||||| ||| || || ||||||||||| || ||| | ||| Sbjct 8267 CACATCCTGGCTTTCTTTGCCGCCTCTGACGGCATCGTCAACGAGAACCTGGTAGAGCGA 8208 Query 125199 TTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATT 125258 ||| ||| | ||||||| | ||||| ||||| || || |||||||| Sbjct 8207 TTCAGCGGCGAGGTTCAGGTTCCAGAAGCCCGATGCTTCTACGGGTTTCAGATCATGATG 8148 Query 125259 GAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACAT 125305 |||||| | ||||| || | ||||| ||||| |||| ||||| Sbjct 8147 GAGAACATCCACTCTGAGACATACTCGTTGCTGATCGACACATACAT 8101 Score = 122 bits (134), Expect = 1e-22 Identities = 349/527 (66%), Gaps = 25/527 (5%) Strand=Plus/Minus Query 125352 GTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCT 125411 || || | ||| || || ||||| | |||| |||| ||||| | ||| | | || Sbjct 7978 GTTCCCTGTATTCGCAAGAAGGCGGACTGGGCTATTCACTGGATTCAGGACAAGGAATCC 7919 Query 125412 TCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGT 125471 | |||| | || | || || || ||||| || |||||||||||||| || Sbjct 7918 AGCTTCGCCCAGCGATTAGTCGCCTTTGCCGCTGTTGAGGGCATCTTCTTCAGCGGCGCC 7859 Query 125472 TTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAAC 125531 ||||| ||||||||||||| |||||||| || | |||||||| ||||| | |||| Sbjct 7858 TTTGCCTCCATCTTTTGGCTGAAGAAGCGGGGCTTGATGCCCGGCCTGACCTTCTCTAAC 7799 Query 125532 GAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTG-TTTCGCAA 125590 || | || || || |||||||| || ||| ||||||||| || ||| ||||| Sbjct 7798 GAACTCATCTCGCGCGACGAGGGTCTGCACACCGACTTTGCCTGCCTGCTGCACTCGCAC 7739 Query 125591 CT--ATCTGCGT-CCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGA 125647 || | | ||| || | ||||||| || ||| | ||||| | ||||| Sbjct 7738 CTGAAGCACCGTGCCAGCAAGCAGATC-----ATCAAA--GACATCA------TCACCGA 7692 Query 125648 TGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGC-ATGATTGGCA 125706 ||||| | || || || ||||| || ||||| | | || || || | | |||| Sbjct 7691 CGCCGTCACCATCGAGCAGGAGTTCCTGACCGAGGCTTTGCC-GTGTGCTCTACTCGGCA 7633 Query 125707 TGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGT 125766 ||||| | || ||| ||||||| || || || || || || || ||| || Sbjct 7632 TGAACGCTACTCTGATGAAGCAGTACATTGAATTCGTCGCTGACCGCCTCCTGGTCG--- 7576 Query 125767 TGATTGGC--CG-CAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATAT 125823 | ||| || ||| | ||||| | || ||||||||||||||| | ||| | Sbjct 7575 CTCTCGGCAACGAGAAGGTGTACAAGACGGCCAACCCCTTTGATTTCATGGAAAACATCT 7516 Query 125824 CACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 |||| | || ||||||||||| || |||||| ||| |||||||| Sbjct 7515 CACTGGGTGGCAAGACCAACTTCTTTGAGAAGCGAGTCGGCGAGTAC 7469 >seq1793 Length=11804 Score = 147 bits (162), Expect = 3e-30 Identities = 361/542 (67%), Gaps = 4/542 (1%) Strand=Plus/Plus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGA 96866 || ||||| | ||| |||| | | || |||||| || ||| ||| | | | || Sbjct 7106 ACCAACGGTACTTCCAATGGCGTCATTCCCATGCTCCGAGTGTTCAACAACACGGCCAGA 7165 Query 96867 TACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGG 96926 || || ||||| ||||| || || ||||| || | ||| ||||| |||| |||||| Sbjct 7166 TATGTAGACCAGGGTGGCAACAAGCGACCAGGTGCCTTTGCCATCTACCTGGAGCCTTGG 7225 Query 96927 CACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGA 96986 ||||| || || ||||| || |||| | || || ||| ||| || |||| || Sbjct 7226 CACGCTGATGTCTTTGAGTTCCTCGACCTACGTAAGAACCACGGCAAGGAGGAGGTTCGC 7285 Query 96987 GCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGAC 97046 || ||||| | || || || ||| | || ||| | ||||||||||| ||| | | Sbjct 7286 GCGCGGGACCTTTTCCTCGCCCTGTGGATCCCTGATCTCTTCATGAAGCGTGTCGAGAAG 7345 Query 97047 GGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGC 97106 ||| |||||| || ||||| ||| | || ||||| || |||| |||| || Sbjct 7346 AACGGCGACTGGACTCTCATGTGTCCCAATGAGTGCCCCGGCCTTGCCGACTGCTATGGT 7405 Query 97107 GAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGC-CGATACGTGAGACGAGT 97165 || ||||||||||| |||| ||||||| |||||| | || |||| | | Sbjct 7406 GAGGAGTTTGAGGCTCTGTACGAAAAGTACGAGCGTGAGGGCAAGGGTCGCAAGACCA-T 7464 Query 97166 CGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGT 97224 | || | |||| || ||| | |||| || |||||| ||||| || | || | Sbjct 7465 CCGCGC-CCAGAAGCTCTGGTACTCCATTTTGGAAGCTCAGACTGAGACCGGCAACCCCT 7523 Query 97225 ACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCA 97284 ||| |||||||||||| | || || |||||||| || | || ||||||| Sbjct 7524 TCATGCTCTACAAGGATGCTTGCAACAAGAAGAGCAACCAGAAGAACCTAGGAACCATCA 7583 Query 97285 AGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTT 97344 | || ||||| |||||||| ||| | || ||| || | ||||||||| ||| || | Sbjct 7584 GAAGTTCTAATCTCTGCACGGAGATTATCGAATACTCCGCCCCGGACGAGGTGGCCGTCT 7643 Query 97345 GC 97346 || Sbjct 7644 GC 7645 >seq1154 Length=35070 Score = 86.0 bits (94), Expect = 9e-12 Identities = 167/241 (69%), Gaps = 7/241 (3%) Strand=Plus/Minus Query 70067 GGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGAC 70126 || ||||| || || |||||||| ||||| ||| | || | ||| || |||| || || Sbjct 3288 GGGGATCTTGGACCCGTGTACGGCTTCCAATGGCGCCATTTTGGCGCCGAGTACGTCGA- 3230 Query 70127 TGCGA-GACAGACTATTCGGGTCAGGGTGTTGATCAATT-GCAGACAATCATTGACACTC 70184 ||| | ||| || || | || |||| || ||||| | || || | || |||| | Sbjct 3229 TGCAAAGACGGATTACACTGGCAAGGGCGTCGATCAGCTCGCCGAGG-TAATCGACAAGC 3171 Query 70185 TCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGC 70244 ||| | ||| || ||| |||| ||| | ||| || | ||||| | |||||||| Sbjct 3170 TCAGAAACAAGCCGTACGATCGGAGAATCATCATGAGCGCGTGGAACGCGCGAGATTTGC 3111 Query 70245 ACCAAATGGCACTACCACCGTGTCACTGTTTGGCTCAGTTTTA---CTCGTACGATGGCA 70301 ||| ||||| | || ||||||||| || ||||||||||| ||||||| |||| Sbjct 3110 ACCTCATGGCGTTGCCGCCGTGTCACGTCTTTGCTCAGTTTTACGTCTCGTACCCGGGCA 3051 Query 70302 A 70302 | Sbjct 3050 A 3050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741040358569840