Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypocrella_20siamensis_20[genbank_20GCA_5F000731825.1_202014-07-18]
2,034 sequences; 28,856,456 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq1893 140 7e-28
seq1745 122 2e-22
seq1923 84.2 5e-11
>seq1893
Length=9943
Score = 140 bits (154), Expect = 7e-28
Identities = 158/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407
|| || ||||| | |||||||| ||||| || || ||||| || ||||| | || |||
Sbjct 787 AGGACGAGATGCAGCGTAGATTCCTTCTGGATGTTGTAGTCGGACAGAGTACGGCCATCT 728
Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467
|| ||||| || ||||| ||||| || | ||| || || ||||| || || || || |||
Sbjct 727 TCGAGTTGCTTGCCAGCGAAAATCAGTCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCC 668
Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527
|||||||||| || ||||| || | ||| ||| | || ||||| || || || |||
Sbjct 667 TGAATCTTTGACTTGACATTGTCGATGGTGTCGGATGACTCGACCTCAAGGGTGATGGTC 608
Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| || || ||||| || || || ||||||||
Sbjct 607 TTGCCGGTGAGTGTCTTCACGAAAATCTGCAT 576
Score = 116 bits (128), Expect = 9e-21
Identities = 141/192 (73%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 104356 ATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTG 104415
||| | ||| ||||| || ||||| || ||||| || || || | || ||||| |||||
Sbjct 1082 ATGAAGTGTTGATTCCTTTTGAATGTTGTAGTCGGAGAGGGTGCGCCCATCTTCAAGTTG 1023
Query 104416 TTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT 104475
|| ||||| ||||| || | || || || ||||| || ||||| ||||||||||||||
Sbjct 1022 CTTGCCAGCGAAAATCAGACGTTGCTGGTCCGGAGGGATCCCTTCCTTATCCTGAATCTT 963
Query 104476 TGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGT 104535
|| || || || || | || ||| | || ||||| || ||||| ||||| |||||
Sbjct 962 TGACTTGACGTTGTCAATAGTGTCGGAGGACTCAACCTCGAGGGTAATGGTCTTGCCAGT 903
Query 104536 AAGTGTTTTTAC 104547
|| || || ||
Sbjct 902 CAGGGTCTTGAC 891
Score = 111 bits (122), Expect = 4e-19
Identities = 139/191 (73%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428
|| ||||| || || || || ||||| | ||| ||||| | || ||||||||||||
Sbjct 1297 TCCTTCTGGATGTTGTAATCGCTCAGAGTGCGACCATCTTCCAACTGCTTTCCAGCAAAA 1238
Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488
|| || | || ||||| ||||| || ||||| ||||| ||||| || | || || ||
Sbjct 1237 ATGAGACGTTGCTGATCCGGAGGAATACCTTCCTTATCTTGAATTTTAGACTTGACGTTG 1178
Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548
|| | ||||| || | ||| ||||| | ||||| ||||| || || | ||||| |||
Sbjct 1177 TCAATAGTATCACTGGATTCCACCTCCAAGGTAATTGTCTTGCCTGTCAAGGTTTTGACA 1118
Query 104549 AATATCTGCAT 104559
|| || |||||
Sbjct 1117 AAAATTTGCAT 1107
>seq1745
Length=53961
Score = 122 bits (134), Expect = 2e-22
Identities = 144/195 (74%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428
|| |||||||| || ||||| || || | || || || || ||||| ||||||||
Sbjct 17040 TCCTTCTGAATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGTTTGCCAGCAAAG 17099
Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488
|| || | ||| ||||| || || |||||||| || ||||||||||| | || |||||
Sbjct 17100 ATGAGTCGCTGCTGATCCGGGGGGATTCCTTCCTTGTCCTGAATCTTGGACTTGACATTG 17159
Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548
|| | ||| ||| || || ||||| || || || ||||| || || || ||||| ||
Sbjct 17160 TCAATGGTGTCGGAAGACTCCACCTCGAGGGTGATCGTCTTCCCCGTCAGGGTTTTGACG 17219
Query 104549 AATATCTGCATTTTG 104563
|| |||||||| |||
Sbjct 17220 AAGATCTGCATCTTG 17234
>seq1923
Length=107003
Score = 84.2 bits (92), Expect = 5e-11
Identities = 108/149 (72%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 269135 TTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTT 269194
||||| || ||||||||||| || || || ||||| || | |||||| | ||||||
Sbjct 7903 TTAGTCGCCTTTGCCGCTGTTGAGGGCATCTTCTTCAGCGGCGCCTTTGCCTCCATCTTT 7844
Query 269195 TGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGG 269254
||| ||||||| | ||| | ||||| || | || |||||||||||| | || |
Sbjct 7843 TGGCTGAAGAAGCGGGGCTTGATGCCCGGCCTGACCTTCTCTAACGAACTCATCTCGCGC 7784
Query 269255 GACGAAGGTTTACACTGCGACTTCGCTTG 269283
||||| ||| | ||| |||||| || ||
Sbjct 7783 GACGAGGGTCTGCACACCGACTTTGCCTG 7755
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151368393838072
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |