Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypocrella_20siamensis_20[genbank_20GCA_5F000731825.1_202014-07-18] 2,034 sequences; 28,856,456 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1893 140 7e-28 seq1745 122 2e-22 seq1923 84.2 5e-11 >seq1893 Length=9943 Score = 140 bits (154), Expect = 7e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | |||||||| ||||| || || ||||| || ||||| | || ||| Sbjct 787 AGGACGAGATGCAGCGTAGATTCCTTCTGGATGTTGTAGTCGGACAGAGTACGGCCATCT 728 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || ||||| || ||||| ||||| || | ||| || || ||||| || || || || ||| Sbjct 727 TCGAGTTGCTTGCCAGCGAAAATCAGTCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCC 668 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 |||||||||| || ||||| || | ||| ||| | || ||||| || || || ||| Sbjct 667 TGAATCTTTGACTTGACATTGTCGATGGTGTCGGATGACTCGACCTCAAGGGTGATGGTC 608 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || ||||| || || || |||||||| Sbjct 607 TTGCCGGTGAGTGTCTTCACGAAAATCTGCAT 576 Score = 116 bits (128), Expect = 9e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 104356 ATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTG 104415 ||| | ||| ||||| || ||||| || ||||| || || || | || ||||| ||||| Sbjct 1082 ATGAAGTGTTGATTCCTTTTGAATGTTGTAGTCGGAGAGGGTGCGCCCATCTTCAAGTTG 1023 Query 104416 TTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT 104475 || ||||| ||||| || | || || || ||||| || ||||| |||||||||||||| Sbjct 1022 CTTGCCAGCGAAAATCAGACGTTGCTGGTCCGGAGGGATCCCTTCCTTATCCTGAATCTT 963 Query 104476 TGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGT 104535 || || || || || | || ||| | || ||||| || ||||| ||||| ||||| Sbjct 962 TGACTTGACGTTGTCAATAGTGTCGGAGGACTCAACCTCGAGGGTAATGGTCTTGCCAGT 903 Query 104536 AAGTGTTTTTAC 104547 || || || || Sbjct 902 CAGGGTCTTGAC 891 Score = 111 bits (122), Expect = 4e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || ||||| || || || || ||||| | ||| ||||| | || |||||||||||| Sbjct 1297 TCCTTCTGGATGTTGTAATCGCTCAGAGTGCGACCATCTTCCAACTGCTTTCCAGCAAAA 1238 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || || | || ||||| ||||| || ||||| ||||| ||||| || | || || || Sbjct 1237 ATGAGACGTTGCTGATCCGGAGGAATACCTTCCTTATCTTGAATTTTAGACTTGACGTTG 1178 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 || | ||||| || | ||| ||||| | ||||| ||||| || || | ||||| ||| Sbjct 1177 TCAATAGTATCACTGGATTCCACCTCCAAGGTAATTGTCTTGCCTGTCAAGGTTTTGACA 1118 Query 104549 AATATCTGCAT 104559 || || ||||| Sbjct 1117 AAAATTTGCAT 1107 >seq1745 Length=53961 Score = 122 bits (134), Expect = 2e-22 Identities = 144/195 (74%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || |||||||| || ||||| || || | || || || || ||||| |||||||| Sbjct 17040 TCCTTCTGAATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGTTTGCCAGCAAAG 17099 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || || | ||| ||||| || || |||||||| || ||||||||||| | || ||||| Sbjct 17100 ATGAGTCGCTGCTGATCCGGGGGGATTCCTTCCTTGTCCTGAATCTTGGACTTGACATTG 17159 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 || | ||| ||| || || ||||| || || || ||||| || || || ||||| || Sbjct 17160 TCAATGGTGTCGGAAGACTCCACCTCGAGGGTGATCGTCTTCCCCGTCAGGGTTTTGACG 17219 Query 104549 AATATCTGCATTTTG 104563 || |||||||| ||| Sbjct 17220 AAGATCTGCATCTTG 17234 >seq1923 Length=107003 Score = 84.2 bits (92), Expect = 5e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 269135 TTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTT 269194 ||||| || ||||||||||| || || || ||||| || | |||||| | |||||| Sbjct 7903 TTAGTCGCCTTTGCCGCTGTTGAGGGCATCTTCTTCAGCGGCGCCTTTGCCTCCATCTTT 7844 Query 269195 TGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGG 269254 ||| ||||||| | ||| | ||||| || | || |||||||||||| | || | Sbjct 7843 TGGCTGAAGAAGCGGGGCTTGATGCCCGGCCTGACCTTCTCTAACGAACTCATCTCGCGC 7784 Query 269255 GACGAAGGTTTACACTGCGACTTCGCTTG 269283 ||||| ||| | ||| |||||| || || Sbjct 7783 GACGAGGGTCTGCACACCGACTTTGCCTG 7755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151368393838072