Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypocrella_20siamensis_20[genbank_20GCA_5F000731825.1_202014-07-18] 2,034 sequences; 28,856,456 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq1745 105 6e-18 >seq1745 Length=53961 Score = 105 bits (116), Expect = 6e-18 Identities = 166/235 (71%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 || ||||||| | | ||| || || || ||||||||||| ||||||||||| || || Sbjct 17004 CCCCCGCGCAGTCGCAGCACCAAGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTC-GCT 17062 Query 48560 AATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 | || || | ||||| ||||| || || | | || | |||||||||||| || Sbjct 17063 CAGGGTGCGGCCATCCTCGAGCTGTTTGCCAGCAAAGATGAGTCGCTGCTGATCCGGGGG 17122 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | |||||||||| ||| || ||||| | | ||||| |||| ||||||| Sbjct 17123 GATTCCTTCCTTGTCCTGAATCTTGGACTTGACATTGTCAATGGTGTCGGAAGACTCCAC 17182 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTGTCT 48733 ||||| || || || || || || || ||||| || || ||||||||| || || Sbjct 17183 CTCGAGGGTGATCGTCTTCCCCGTCAGGGTTTTGACGAAGATCTGCATCTTGCCT 17237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421240757446034