Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypocrella_20siamensis_20[genbank_20GCA_5F000731825.1_202014-07-18]
2,034 sequences; 28,856,456 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq1745 111 1e-19
seq1893 105 6e-18
seq1479 89.7 5e-13
>seq1745
Length=53961
Score = 111 bits (122), Expect = 1e-19
Identities = 162/229 (71%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 94779 CTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGC 94838
|||| || | || ||||| ||||||||| | || ||||| || | ||| || ||||
Sbjct 17002 CTCCCCCGCGCAGTCGCAGCACCAAGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCGC 17061
Query 94839 TCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898
||| ||| | |||||| |||||||| || ||||||| | || |||||||| || |
Sbjct 17062 TCAGGGTGCGGCCATCCTCGAGCTGTTTGCCAGCAAAGATGAGTCGCTGCTGATCCGGGG 17121
Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958
| || ||||| ||||| | ||| || | |||||| | | | ||||| | || |
Sbjct 17122 GGATTCCTTCCTTGTCCTGAATCTTGGACTTGACATTGTCAATGGTGTCGGAAGACTCCA 17181
Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
| || | ||||| || || || || || ||||| || |||||||||||
Sbjct 17182 CCTCGAGGGTGATCGTCTTCCCCGTCAGGGTTTTGACGAAGATCTGCAT 17230
>seq1893
Length=9943
Score = 105 bits (116), Expect = 6e-18
Identities = 139/193 (72%), Gaps = 0/193 (0%)
Strand=Plus/Minus
Query 94817 TCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAG 94876
||||| || | ||| |||||||||| |||| ||| |||| ||| ||||| ||||
Sbjct 1297 TCCTTCTGGATGTTGTAATCGCTCAGAGTGCGACCATCTTCCAACTGCTTTCCAGCAAAA 1238
Query 94877 ATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCG 94936
|| | | ||||||||| |||||||||||||| || || | |||||| | ||||||| |
Sbjct 1237 ATGAGACGTTGCTGATCCGGAGGAATACCTTCCTTATCTTGAATTTTAGACTTGACGTTG 1178
Query 94937 CCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACA 94996
| | ||| ||| | || || || | || || || || || || | ||||| |||
Sbjct 1177 TCAATAGTATCACTGGATTCCACCTCCAAGGTAATTGTCTTGCCTGTCAAGGTTTTGACA 1118
Query 94997 AAGATCTGCATGC 95009
|| || |||||||
Sbjct 1117 AAAATTTGCATGC 1105
Score = 93.3 bits (102), Expect = 4e-14
Identities = 143/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 94805 TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGT 94864
|||| ||||||||||| || | ||| || ||| || ||| | ||| || || ||
Sbjct 778 TGCAGCGTAGATTCCTTCTGGATGTTGTAGTCGGACAGAGTACGGCCATCTTCGAGTTGC 719
Query 94865 TTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTT 94924
|| || | || || | || ||||| || ||||| || || || ||||| | ||| |||
Sbjct 718 TTGCCAGCGAAAATCAGTCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGAATCTTT 659
Query 94925 GCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTA 94984
| |||||| | ||| ||||| | ||||| |||| |||||||| || || ||
Sbjct 658 GACTTGACATTGTCGATGGTGTCGGATGACTCGACCTCAAGGGTGATGGTCTTGCCGGTG 599
Query 94985 AGAGTTTTCACAAAGATCTGCATG 95008
|| || ||||| || |||||||||
Sbjct 598 AGTGTCTTCACGAAAATCTGCATG 575
Score = 82.4 bits (90), Expect = 7e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827
|||| ||| || || |||| | ||||||||||| || | || ||||||||||| |
Sbjct 1118 AAAAATTTGCATGCCACCTCGGAGACGCAACACCAAATGAAGTGTTGATTCCTTTTGAAT 1059
Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887
||| || ||| | ||| ||| || || || || || | || || | | |||
Sbjct 1058 GTTGTAGTCGGAGAGGGTGCGCCCATCTTCAAGTTGCTTGCCAGCGAAAATCAGACGTTG 999
Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947
||| || ||||| || ||||| || || | ||| |||| ||||||| | | | ||||||
Sbjct 998 CTGGTCCGGAGGGATCCCTTCCTTATCCTGAATCTTTGACTTGACGTTGTCAATAGTGTC 939
Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCAC 94995
| | || || || | || ||||| || ||||| || || || ||
Sbjct 938 GGAGGACTCAACCTCGAGGGTAATGGTCTTGCCAGTCAGGGTCTTGAC 891
>seq1479
Length=130260
Score = 89.7 bits (98), Expect = 5e-13
Identities = 108/147 (73%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911
|||||| || || || ||| | || || |||| ||||| || ||||||||||| || ||
Sbjct 49479 ATCCTCGAGTTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGAATACCCTCCTT 49538
Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971
||| | ||||| | |||||| | ||| ||||||| | ||||| || | |||||
Sbjct 49539 GTCCTGGATTTTAGACTTGACATTGTCGATGGTGTCAGAGGACTCGACCTCGAGGGTGAT 49598
Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAA 94998
|||||| || || || || ||||| ||
Sbjct 49599 GGTTTTACCCGTCAGCGTCTTCACGAA 49625
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448279802196240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |