Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypocrella_20siamensis_20[genbank_20GCA_5F000731825.1_202014-07-18] 2,034 sequences; 28,856,456 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq1745 111 1e-19 seq1893 105 6e-18 seq1479 89.7 5e-13 >seq1745 Length=53961 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 94779 CTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGC 94838 |||| || | || ||||| ||||||||| | || ||||| || | ||| || |||| Sbjct 17002 CTCCCCCGCGCAGTCGCAGCACCAAGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCGC 17061 Query 94839 TCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 ||| ||| | |||||| |||||||| || ||||||| | || |||||||| || | Sbjct 17062 TCAGGGTGCGGCCATCCTCGAGCTGTTTGCCAGCAAAGATGAGTCGCTGCTGATCCGGGG 17121 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 | || ||||| ||||| | ||| || | |||||| | | | ||||| | || | Sbjct 17122 GGATTCCTTCCTTGTCCTGAATCTTGGACTTGACATTGTCAATGGTGTCGGAAGACTCCA 17181 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || | ||||| || || || || || ||||| || ||||||||||| Sbjct 17182 CCTCGAGGGTGATCGTCTTCCCCGTCAGGGTTTTGACGAAGATCTGCAT 17230 >seq1893 Length=9943 Score = 105 bits (116), Expect = 6e-18 Identities = 139/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 94817 TCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAG 94876 ||||| || | ||| |||||||||| |||| ||| |||| ||| ||||| |||| Sbjct 1297 TCCTTCTGGATGTTGTAATCGCTCAGAGTGCGACCATCTTCCAACTGCTTTCCAGCAAAA 1238 Query 94877 ATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCG 94936 || | | ||||||||| |||||||||||||| || || | |||||| | ||||||| | Sbjct 1237 ATGAGACGTTGCTGATCCGGAGGAATACCTTCCTTATCTTGAATTTTAGACTTGACGTTG 1178 Query 94937 CCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACA 94996 | | ||| ||| | || || || | || || || || || || | ||||| ||| Sbjct 1177 TCAATAGTATCACTGGATTCCACCTCCAAGGTAATTGTCTTGCCTGTCAAGGTTTTGACA 1118 Query 94997 AAGATCTGCATGC 95009 || || ||||||| Sbjct 1117 AAAATTTGCATGC 1105 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 94805 TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGT 94864 |||| ||||||||||| || | ||| || ||| || ||| | ||| || || || Sbjct 778 TGCAGCGTAGATTCCTTCTGGATGTTGTAGTCGGACAGAGTACGGCCATCTTCGAGTTGC 719 Query 94865 TTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTT 94924 || || | || || | || ||||| || ||||| || || || ||||| | ||| ||| Sbjct 718 TTGCCAGCGAAAATCAGTCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGAATCTTT 659 Query 94925 GCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTA 94984 | |||||| | ||| ||||| | ||||| |||| |||||||| || || || Sbjct 658 GACTTGACATTGTCGATGGTGTCGGATGACTCGACCTCAAGGGTGATGGTCTTGCCGGTG 599 Query 94985 AGAGTTTTCACAAAGATCTGCATG 95008 || || ||||| || ||||||||| Sbjct 598 AGTGTCTTCACGAAAATCTGCATG 575 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || || |||| | ||||||||||| || | || ||||||||||| | Sbjct 1118 AAAAATTTGCATGCCACCTCGGAGACGCAACACCAAATGAAGTGTTGATTCCTTTTGAAT 1059 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 ||| || ||| | ||| ||| || || || || || | || || | | ||| Sbjct 1058 GTTGTAGTCGGAGAGGGTGCGCCCATCTTCAAGTTGCTTGCCAGCGAAAATCAGACGTTG 999 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 ||| || ||||| || ||||| || || | ||| |||| ||||||| | | | |||||| Sbjct 998 CTGGTCCGGAGGGATCCCTTCCTTATCCTGAATCTTTGACTTGACGTTGTCAATAGTGTC 939 Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCAC 94995 | | || || || | || ||||| || ||||| || || || || Sbjct 938 GGAGGACTCAACCTCGAGGGTAATGGTCTTGCCAGTCAGGGTCTTGAC 891 >seq1479 Length=130260 Score = 89.7 bits (98), Expect = 5e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 |||||| || || || ||| | || || |||| ||||| || ||||||||||| || || Sbjct 49479 ATCCTCGAGTTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGAATACCCTCCTT 49538 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | ||||| | |||||| | ||| ||||||| | ||||| || | ||||| Sbjct 49539 GTCCTGGATTTTAGACTTGACATTGTCGATGGTGTCAGAGGACTCGACCTCGAGGGTGAT 49598 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAA 94998 |||||| || || || || ||||| || Sbjct 49599 GGTTTTACCCGTCAGCGTCTTCACGAA 49625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448279802196240