Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypocrella_20siamensis_20[genbank_20GCA_5F000731825.1_202014-07-18] 2,034 sequences; 28,856,456 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1689 181 2e-41 seq1111 147 3e-31 >seq1689 Length=56064 Score = 181 bits (200), Expect = 2e-41 Identities = 205/272 (75%), Gaps = 2/272 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || || | ||| |||||| || |||||||| || ||||||||||| || | Sbjct 10730 CGCCAAGCGCCACCGAAAGAT-TCTTCGTGACAACATCCAGGGCATCACCAAGCCTGCCA 10788 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| ||||| || ||||||||||| ||||||||| | || | || |||| ||||||| Sbjct 10789 TCCGACGTCTTGCACGTCGTGGTGGTGTCAAGCGTATTTCAGCCATGATCTACGAAGAGA 10848 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || |||| | |||| |||||| | || |||| ||| ||| || || |||| Sbjct 10849 CCCGCACTGTTCTCAAGACTTTCCTCGAAGGTGTCATCCGTGACGCTGTCACGTACACCG 10908 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| ||||| || |||||||| ||| | || |||||||||| ||||| || || | Sbjct 10909 AGCACGCAAAACGCAAAACTGTCACTTCCCTCGACGTCGTCTATGCCTTGAAGCGACAGG 10968 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 |||| | | || |||||||| ||||| || Sbjct 10969 GCCGCACCCTCTACGGTTTTGGTGGTTAAACT 11000 >seq1111 Length=246067 Score = 147 bits (162), Expect = 3e-31 Identities = 195/268 (73%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || || | ||| |||||| || ||||||||||| ||||| || || || || Sbjct 176998 GCCAAGCGCCACCGTAAGAT-TCTTCGTGACAACATCCAAGGCATCACGAAACCTGCCAT 177056 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 | | ||||| ||||||||||| || |||||||| | |||| || |||| ||||||| Sbjct 177057 CAGACGTCTCGCTCGTCGTGGCGGCGTCAAGCGCATATCTGCCATGATCTACGAAGAGAC 177116 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| ||| | |||| || ||| | || |||| || || || || ||||| Sbjct 177117 CCGTACTGTCCTTAAGACGTTTCTCGAAGGAGTGATCCGCGACGCCGTCACATACACCGA 177176 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| ||||| ||||| ||||| || |||| |||| || |||||||| | ||||| Sbjct 177177 ACACGCCAAACGAAAGACAGTCACATCATTGGACGTCGTGTACGCATTGAAGAGGCAAGG 177236 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | | ||||| || || ||||| Sbjct 177237 TCGTACGTTGTATGGATTCGGTGGTTAA 177264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79073340299562